>INADL_HUMAN (Q8NI35) InaD-like protein (Inadl protein) (hINADL)|
           (Pals1-associated tight junction protein) (Protein
           associated to tight junctions)
          Length = 1801

 Score = 26.9 bits (58), Expect(2) = 3.0
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 7/38 (18%)
 Frame = -2

Query: 144 CSSRFVGSRTPKLVF-------GNIHGPSSKSPLTTMF 52
           CS+ F  SR   LVF       GN+H PS+ S ++ +F
Sbjct: 71  CSANFDFSRKGLLVFTDGSITNGNVHRPSNNSTVSGLF 108



 Score = 22.3 bits (46), Expect(2) = 3.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 316 RQDVRLLRGRLNHLRDD 266
           +Q ++ L+G+LNH+  D
Sbjct: 54  QQSIKQLKGQLNHIPSD 70

>FLA2_PYRHO (O58283) Probable flagellin PH0548|
          Length = 207

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +2

Query: 416 NATSQAVNVNFTARAERSRVALYSVYYNTRSDDHSSLCGPVIDDVRVWGLNG 571
           NA S+ +++ +T    RS+    S+YYN RS+ ++     + D   VW  NG
Sbjct: 80  NAGSEGIDLRYTKIVLRSKSQEVSLYYN-RSNYYNGAVDNIFDISGVWPSNG 130

>RP32_ECOLI (P0AGB3) RNA polymerase sigma-32 factor (Heat shock regulatory|
           protein F33.4)
          Length = 284

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +2

Query: 239 IELLSGKEGIISQMVETTPQK--AYILTFTLGSAGDSCQPPMAVMAFAGDQAQNF 397
           +E+++ + G+ S+ V     +  A  +TF L S  DS   PMA + +  D++ NF
Sbjct: 154 VEMVARELGVTSKDVREMESRMAAQDMTFDLSSDDDSDSQPMAPVLYLQDKSSNF 208

>RP32_ECOL6 (P0AGB4) RNA polymerase sigma-32 factor (Heat shock regulatory|
           protein F33.4)
          Length = 284

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +2

Query: 239 IELLSGKEGIISQMVETTPQK--AYILTFTLGSAGDSCQPPMAVMAFAGDQAQNF 397
           +E+++ + G+ S+ V     +  A  +TF L S  DS   PMA + +  D++ NF
Sbjct: 154 VEMVARELGVTSKDVREMESRMAAQDMTFDLSSDDDSDSQPMAPVLYLQDKSSNF 208

>RP32_ECO57 (P0AGB5) RNA polymerase sigma-32 factor (Heat shock regulatory|
           protein F33.4)
          Length = 284

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +2

Query: 239 IELLSGKEGIISQMVETTPQK--AYILTFTLGSAGDSCQPPMAVMAFAGDQAQNF 397
           +E+++ + G+ S+ V     +  A  +TF L S  DS   PMA + +  D++ NF
Sbjct: 154 VEMVARELGVTSKDVREMESRMAAQDMTFDLSSDDDSDSQPMAPVLYLQDKSSNF 208


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,011,075
Number of Sequences: 219361
Number of extensions: 1906515
Number of successful extensions: 5904
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5904
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)