>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 305

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 17/45 (37%), Positives = 19/45 (42%)
 Frame = +1

Query: 1   ERVGGGEKPTAEGRKEDEARPAILQLLPRAEPESSPLAPYQRAPP 135
           E   GG      G + +E  P  L L P  EPE     P  RAPP
Sbjct: 36  EGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPP 80

>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA-binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 305

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 17/45 (37%), Positives = 19/45 (42%)
 Frame = +1

Query: 1   ERVGGGEKPTAEGRKEDEARPAILQLLPRAEPESSPLAPYQRAPP 135
           E   GG      G + +E  P  L L P  EPE     P  RAPP
Sbjct: 36  EGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPP 80

>MOAE_KLEAE (P54795) Protein moaE|
          Length = 257

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -3

Query: 113 ARGEDSGSARGSNWRMAGLASSSFLPSAVGFSPPP 9
           AR   SG  R S+ R AGL SSS  P+    +PPP
Sbjct: 57  ARCGASGCCRRSSTRPAGLMSSSAAPAGWATAPPP 91

>T2R19_RAT (Q9JKU1) Taste receptor type 2 member 19 (T2R19) (Taste receptor|
           type 2 member 1) (T2R1)
          Length = 335

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 342 HCKCCHCG*M**WHPSRSYKLPGIP 268
           HCKCCHC     W  SRS +L  +P
Sbjct: 292 HCKCCHCTRA--WVTSRSPRLSDLP 314

>T2R19_MOUSE (Q9JKT2) Taste receptor type 2 member 19 (T2R19)|
          Length = 335

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 342 HCKCCHCG*M**WHPSRSYKLPGIP 268
           HCKCCHC     W  SR+ +L  +P
Sbjct: 292 HCKCCHCARA--WVTSRNPRLSDLP 314

>SEC13_PICPA (P53024) Protein transport protein SEC13|
          Length = 289

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 9/50 (18%)
 Frame = +3

Query: 270 GCQAIYSFWR--DAIITF-------SHSDSTCSVCWNPRRLS*CHICNFS 392
           GC  +   WR  DA  TF        HSD    V W+P RLS  +I   S
Sbjct: 169 GCDNLVKIWRYDDAAKTFIEEEAFQGHSDWVRDVAWSPSRLSKSYIATAS 218

>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 301

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +1

Query: 13  GGEKPTAEGRKEDEARPAILQLLPRAEPESSPLAPYQRAPP 135
           GG      G + +E  P   +LLP  EPE  P  P  RAPP
Sbjct: 40  GGAGDYGNGLESEELEPG--ELLPEPEPEEEP--PRPRAPP 76

>HDAC1_STRPU (P56518) Histone deacetylase 1 (HD1)|
          Length = 576

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 19  EKPTAEGRKEDEARPAILQLLPRAEPESSPLAPYQRAPPEIEETRP 156
           + P  E  KE ++  A  +  P AEP++ P+      PP+  E +P
Sbjct: 452 DSPGKEADKEAKSSDASKEAKPAAEPQAVPMDTTPAPPPKKSEDKP 497

>GNL3_MOUSE (Q8CI11) Guanine nucleotide-binding protein-like 3 (Nucleolar|
           GTP-binding protein 3) (Nucleostemin)
          Length = 538

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 30/95 (31%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
 Frame = +1

Query: 94  PESSPLAPYQRAPPEIEETRP*LEMAAAV----XNYPLVAGLLAFAVAQSAKFFTTWYKE 261
           P +SP A   R+P  IEE RP LE A+A+     N  +V          S  FFT     
Sbjct: 308 PCNSPTALALRSPASIEELRP-LEAASAILSQADNEQVVLKYTVPEYKDSLHFFT----- 361

Query: 262 KRWDARQFIASGGMPSSHSATVTALAVSVGIQEGF 366
           K    R     GG P+  SA     +   G   G+
Sbjct: 362 KLAQRRGLHQKGGSPNVESAAKLVWSEWTGASLGY 396

>RBGPR_RAT (Q5U1Z0) Rab3 GTPase-activating protein non-catalytic subunit (Rab3|
            GTPase-activating protein 150 kDa subunit) (Rab3-GAP
            p150) (Rab3-GAP regulatory subunit) (RAB3-GAP150)
          Length = 1386

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 442  RATEHQKHRASPHMQVSLKLQMWH 371
            R+ EH +H  +PH+Q  + L MW+
Sbjct: 1034 RSIEHLRHILNPHVQNGISLMMWN 1057

>CJ086_HUMAN (Q9NXX6) Protein C10orf86|
          Length = 385

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 9   RGRGKADGRRKEGRRSQASHPPVASSRRARILSPRAVPEGSAGDRGDPTLAGD 167
           RGRG+   R +   RS++  P    SRR      R  PE  + +  +P+ +GD
Sbjct: 13  RGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPERPSLEDTEPSDSGD 65

>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2|
            (ALL1-related protein)
          Length = 5262

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 22   KPTAEGRKEDEARPAILQLLPRAE-PESSPLAPYQRAPPEIEETRP 156
            +P  E   E  A P +   LP A  PES+   P  R P E E+TRP
Sbjct: 4656 EPLVELPTEPLAEPPVPSPLPLASSPESARPKPRARPPEEGEDTRP 4701

>RS12_PARUW (Q6MER6) 30S ribosomal protein S12|
          Length = 126

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 9/94 (9%)
 Frame = -3

Query: 446 PACNRTP--KASCITTHASITEVANVALRKPSWIPTDTASAVTVAECDDG--IPPEAINC 279
           PA  + P  +  C+       +  N ALRK +W+   T   V      +G  +   +I  
Sbjct: 22  PALQKCPQRRGVCLQVKTKTPKKPNSALRKVAWVRLSTGQEVIAYIGGEGHNLQEHSIVL 81

Query: 278 LASQRFS-----LYQVVKNLADCATAKARSPATS 192
           +   R        Y +V+   DCA  K R    S
Sbjct: 82  VRGGRVKDLPGVRYHIVRGALDCAAVKDRKQGRS 115

>CP19A_ORYLA (Q92087) Cytochrome P450 19A1 (EC 1.14.14.1) (Aromatase) (CYPXIX)|
           (Estrogen synthetase) (P-450AROM)
          Length = 518

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 446 PACNRTPKASCITTHASITEVA-NVALRKPSWIPTDTASAV 327
           PAC+RT  +SC+   A +  +A N  +  PS IP  T S +
Sbjct: 5   PACDRTMSSSCLV--AELVSIAPNTTVGLPSGIPMATRSLI 43

>TGM1_HUMAN (P22735) Protein-glutamine gamma-glutamyltransferase K (EC|
           2.3.2.13) (Transglutaminase K) (TGase K) (TGK) (TG(K))
           (Transglutaminase-1) (Epidermal TGase)
          Length = 817

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +3

Query: 6   SRGRGKADGRRKEGRRSQASHPPVASSRRARILSPRAVPEG 128
           SRGRG + G R+ G R   S  PV+            + EG
Sbjct: 68  SRGRGSSSGTRRPGSRGSDSRRPVSRGSGVNAAGDGTIREG 108

>YVRN_BACSU (P46324) Hypothetical protein yvrN|
          Length = 416

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 91  EPESSPLAPYQRAPPEIEETRP*LEMAAAVXNYPLVAGLLAFAVAQSAKFF 243
           E    P   Y  APP  EET        A+ + P+V GL  + +++ A  F
Sbjct: 77  EESGGPQVSYASAPPVAEET------VKAIKSDPMVKGLSLYYLSEGASVF 121

>JERKY_HUMAN (O75564) Jerky protein homolog|
          Length = 520

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 45  GRRSQASHPPVASSRRARILSPRAVPEGSAGDRGDP 152
           GR ++   PP A+S    + S    P+     RGDP
Sbjct: 396 GREAEGGRPPAATSPAEVVWSSEKTPKADQDGRGDP 431

>K1543_HUMAN (Q9P1Y5) Protein KIAA1543|
          Length = 1249

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 7   VGGGEKPTAEGRKEDEARPAILQLLPRAEP-ESSPLAPYQRA 129
           V GGE+P  EG+ E  +RP  +   P   P     L  Y RA
Sbjct: 661 VPGGERPAGEGQGEPTSRPKAVTFSPDLGPVPHEGLGEYNRA 702

>CWF14_SCHPO (O74772) Cell cycle control protein cwf14|
          Length = 146

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 399 KYH*SCKCGTTKAFLDSNRHCKCCHCG 319
           K+  +C C   K+ LD ++  +C HCG
Sbjct: 112 KFGSTCICRVPKSKLDKDQRVRCTHCG 138

>PRP46_YARLI (Q6C709) Pre-mRNA-splicing factor PRP46 (Pre-mRNA-processing|
           protein 46)
          Length = 472

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 431 TPKASCITTHASITEV-ANVALRKPSW 354
           TP AS  TTH S+T + AN+   KP+W
Sbjct: 123 TPSASQPTTHDSLTNLGANLTQSKPAW 149


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,213,423
Number of Sequences: 219361
Number of extensions: 1070971
Number of successful extensions: 5245
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5238
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)