ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags19a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009646.1| Triticum aestivum clone wrsu1.pk0006.a3:fis, full... 607 e-170
2ref|XM_464784.1| Oryza sativa (japonica cultivar-group), mRNA 208 1e-50
3gb|AY568677.1| Oryza sativa (japonica cultivar-group) proline- a... 184 2e-43
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 153 8e-34
5dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic D... 153 8e-34
6dbj|AK058752.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 1e-20
7gb|AC010242.7| Homo sapiens chromosome 5 clone CTC-359E10, compl... 46 0.13
8gb|AC008816.8| Homo sapiens chromosome 5 clone CTD-2122K17, comp... 46 0.13
9gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, comple... 46 0.13
10gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5,... 46 0.13
11gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, comp... 42 2.0
12gb|AY582740.1| Chlamydomonas reinhardtii Fe-hydrogenase assembly... 42 2.0
13gb|AC129886.3| Atelerix albiventris clone LB4-234A16, complete s... 42 2.0
14gb|AC156980.9| Mus musculus chromosome 1, clone RP23-191A12, com... 42 2.0
15gb|AC159301.2| Mus musculus BAC clone RP23-213B1 from chromosome... 42 2.0
16gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold 42 2.0
17gb|AC137970.10| Mus musculus chromosome 3, clone RP23-438E13, co... 40 7.9
18gb|AC115865.9| Mus musculus chromosome 3, clone RP24-314I8, comp... 40 7.9
19gb|AC145959.3| Gallus gallus chromosome UNK clone CH261-17M10, c... 40 7.9
20gb|AC011558.6| Homo sapiens chromosome 19 clone LLNLR-291F12, co... 40 7.9
21gb|AY113188.1| Mastigamoeba balamuthi aldehyde-alcohol dehydroge... 40 7.9
22gb|AC148763.14| Medicago truncatula clone mth2-29o24, complete s... 40 7.9
23emb|BX470154.5| Zebrafish DNA sequence from clone CH211-81N22, c... 40 7.9
24gb|AC093066.2| Homo sapiens chromosome 19 clone LLNLR-237C1, com... 40 7.9
25gb|AC093597.3| Homo sapiens BAC clone RP11-187O17 from 4, comple... 40 7.9
26gb|AF142686.1| Cyclolobium nutans maturase-like protein (matK) g... 40 7.9
27gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 40 7.9
28emb|AJ342722.1|HSA342722 Homo sapiens genomic sequence surroundi... 40 7.9

>gb|BT009646.1| Triticum aestivum clone wrsu1.pk0006.a3:fis, full insert mRNA
           sequence
          Length = 936

 Score =  607 bits (306), Expect = e-170
 Identities = 330/338 (97%)
 Strand = Plus / Minus

                                                                       
Query: 245 ccgacgccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatct 304
           ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 660 ccgacgccaacttacggcactacaccgacgccatcttacggcactacaccgacgccatct 601

                                                                       
Query: 305 tacggcactacaccgagcaccccaagtacaccttcccatgaagtccctgcaagtccaaag 364
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 600 tacggcactacaccgagcaccccaagtacaccttcccatgatgtccctgcaagtccaaag 541

                                                                       
Query: 365 aagcatggattcattggatcctgcgacttctggaagaatcacccagacgctataattgca 424
           |||||||| ||||||||||||||||||| |||||||||||||||||| |||||| |||||
Sbjct: 540 aagcatgggttcattggatcctgcgactactggaagaatcacccagatgctatagttgca 481

                                                                       
Query: 425 gctattgggtcccttggcaacatcggcaagacatttggtgctgcatgcagtatgataggt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gctattgggtcccttggcaacatcggcaagacatttggtgctgcatgcagtatgataggt 421

                                                                       
Query: 485 ggcaagaagctaggaaatatgcatgatgcactctcaaacactagaactgatggtattggc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ggcaagaagctaggaaatatgcatgatgcactctcaaacactagaactgatggtattggc 361

                                                 
Query: 545 gccctgatacgcgagggggcagctgcatacctcaactc 582
           ||||||||||| ||||||||||||||||||||||||||
Sbjct: 360 gccctgatacgtgagggggcagctgcatacctcaactc 323



 Score =  242 bits (122), Expect = 1e-60
 Identities = 154/165 (93%), Gaps = 6/165 (3%)
 Strand = Plus / Minus

                                                                       
Query: 156 cccactatgggggctcaccaactccctcgcatgggtcaggaggaggctacaacccgacac 215
           |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 767 cccactatgggggctcaccaactcccacgcatgggtcaggaggaggctacaatccgacac 708

                                                                       
Query: 216 cgacaccaacttacggtactacaccaacgccgacgccatcttacggcactacaccgacgc 275
           |||||||||||||||| ||||||      |||||||||||||||||||||||||||||||
Sbjct: 707 cgacaccaacttacggcactaca------ccgacgccatcttacggcactacaccgacgc 654

                                                        
Query: 276 catcttatggcactacaccgacgccatcttacggcactacaccga 320
           || |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 653 caacttacggcactacaccgacgccatcttacggcactacaccga 609



 Score =  198 bits (100), Expect = 1e-47
 Identities = 112/116 (96%)
 Strand = Plus / Minus

                                                                       
Query: 24  ctgcacatactgagagcaagatgggtggcaaggttcttctgatgagtgctgtcttggtgg 83
           ||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 881 ctgcacacactgagagcaagatgggtggcaaggttcttctgatcagtgccgtcttggtgg 822

                                                                   
Query: 84  ggcttgtttcactgagctcctgcaggagcctgggagagttgcatgagcagaagacc 139
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 821 ggcttgtttcactgagctcgtgcaggagcctgggagagttgcatgagcagaagacc 766



to top

>ref|XM_464784.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 660

 Score =  208 bits (105), Expect = 1e-50
 Identities = 275/332 (82%), Gaps = 6/332 (1%)
 Strand = Plus / Plus

                                                                       
Query: 251 ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 310
           |||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 205 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 264

                                                                       
Query: 311 actacaccgagcaccccaagtacaccttcccatgaagtccctgcaagtccaaagaagcat 370
           || ||||| |||||||| || |||||      ||| ||||||| |  ||| |  ||||||
Sbjct: 265 acgacaccaagcacccccagcacacc------tgatgtccctgaagttccgacaaagcat 318

                                                                       
Query: 371 ggattcattggatcctgcgacttctggaagaatcacccagacgctataattgcagctatt 430
           |  |||  |||||||||||| | ||||||||| || ||||| | ||| ||  ||||||||
Sbjct: 319 gatttctgtggatcctgcgattactggaagaaccatccagatgttatcatctcagctatt 378

                                                                       
Query: 431 gggtcccttggcaacatcggcaagacatttggtgctgcatgcagtatgataggtggcaag 490
           |||||||||||| |||| ||||||||| | ||| |||| |||||| ||||   |||||||
Sbjct: 379 gggtcccttggcgacattggcaagacactcggtactgcttgcagtttgatcactggcaag 438

                                                                       
Query: 491 aagctaggaaatatgcatgatgcactctcaaacactagaactgatggtattggcgccctg 550
           ||||||| |||| | ||||||||||| ||||||||| |||||||||||| ||| || |||
Sbjct: 439 aagctagaaaatcttcatgatgcactttcaaacactggaactgatggtactggtgctctg 498

                                           
Query: 551 atacgcgagggggcagctgcatacctcaactc 582
            | |||||||| ||||||||||||||||||||
Sbjct: 499 ctccgcgagggagcagctgcatacctcaactc 530



 Score =  117 bits (59), Expect = 4e-23
 Identities = 92/103 (89%)
 Strand = Plus / Plus

                                                                       
Query: 51  gcaaggttcttctgatgagtgctgtcttggtggggcttgtttcactgagctcctgcagga 110
           |||||||||||||||| |||| |||| ||||||||||  |||| |||||||| |||||||
Sbjct: 8   gcaaggttcttctgatcagtggtgtcctggtggggctcctttctctgagctcatgcagga 67

                                                      
Query: 111 gcctgggagagttgcatgagcagaagacctactcttcttctac 153
           ||||||||||||||  ||| |||||||||||||||||| ||||
Sbjct: 68  gcctgggagagttgtctgaacagaagacctactcttctactac 110



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                       
Query: 236 acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 295
           |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| 
Sbjct: 166 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 225

                                  
Query: 296 acgccatcttacggcactacacc 318
           || ||||||||||||||||||||
Sbjct: 226 acaccatcttacggcactacacc 248



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 212 acaccgacaccaacttacggtactacaccaac 243
           ||||| |||||| ||||||| |||||||||||
Sbjct: 220 acaccaacaccatcttacggcactacaccaac 251



to top

>gb|AY568677.1| Oryza sativa (japonica cultivar-group) proline- and threonine-rich
           protein mRNA, complete cds
          Length = 902

 Score =  184 bits (93), Expect = 2e-43
 Identities = 272/332 (81%), Gaps = 6/332 (1%)
 Strand = Plus / Plus

                                                                       
Query: 251 ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 310
           |||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 269 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 328

                                                                       
Query: 311 actacaccgagcaccccaagtacaccttcccatgaagtccctgcaagtccaaagaagcat 370
           || ||||| ||| |||| || |||||      ||| ||||||| |  ||| |  ||||||
Sbjct: 329 acgacaccaagctcccccagcacacc------tgatgtccctgaagttccgacaaagcat 382

                                                                       
Query: 371 ggattcattggatcctgcgacttctggaagaatcacccagacgctataattgcagctatt 430
           |  |||  |||||||||||| | ||||||||| || ||||| | ||| ||  ||||||||
Sbjct: 383 gatttctgtggatcctgcgattactggaagaaccatccagatgttatcatctcagctatt 442

                                                                       
Query: 431 gggtcccttggcaacatcggcaagacatttggtgctgcatgcagtatgataggtggcaag 490
           |||||||||||| |||| |||| |||| | | | |||| |||||| ||||   |||||||
Sbjct: 443 gggtcccttggcgacattggcatgacactcgatactgcttgcagtttgatcactggcaag 502

                                                                       
Query: 491 aagctaggaaatatgcatgatgcactctcaaacactagaactgatggtattggcgccctg 550
           ||||||| |||| | ||||||||||| ||||||||| |||||||||||| ||| || |||
Sbjct: 503 aagctagaaaatcttcatgatgcactttcaaacactggaactgatggtactggtgctctg 562

                                           
Query: 551 atacgcgagggggcagctgcatacctcaactc 582
            | |||||||| ||||||||||||||||||||
Sbjct: 563 ctccgcgagggagcagctgcatacctcaactc 594



 Score =  141 bits (71), Expect = 3e-30
 Identities = 123/139 (88%), Gaps = 1/139 (0%)
 Strand = Plus / Plus

                                                                       
Query: 16  tgtctactctgcacatactgagagc-aagatgggtggcaaggttcttctgatgagtgctg 74
           ||||| ||||||| ||||||||||| |||||| || |||||||||||||||| |||| ||
Sbjct: 36  tgtcttctctgcagatactgagagccaagatgagtagcaaggttcttctgatcagtggtg 95

                                                                       
Query: 75  tcttggtggggcttgtttcactgagctcctgcaggagcctgggagagttgcatgagcaga 134
           || ||||||||||  |||| |||||||| |||||||||||||||||||||  ||| ||||
Sbjct: 96  tcctggtggggctcctttctctgagctcatgcaggagcctgggagagttgtctgaacaga 155

                              
Query: 135 agacctactcttcttctac 153
           |||||||||||||| ||||
Sbjct: 156 agacctactcttctactac 174



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                       
Query: 236 acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 295
           |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| 
Sbjct: 230 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 289

                                  
Query: 296 acgccatcttacggcactacacc 318
           || ||||||||||||||||||||
Sbjct: 290 acaccatcttacggcactacacc 312



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 212 acaccgacaccaacttacggtactacaccaac 243
           ||||| |||||| ||||||| |||||||||||
Sbjct: 284 acaccaacaccatcttacggcactacaccaac 315



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  153 bits (77), Expect = 8e-34
 Identities = 161/189 (85%)
 Strand = Plus / Minus

                                                                           
Query: 394     ctggaagaatcacccagacgctataattgcagctattgggtcccttggcaacatcggcaa 453
               ||||||||| || ||||| | ||| ||  |||||||||||||||||||| |||| |||||
Sbjct: 7323474 ctggaagaaccatccagatgttatcatctcagctattgggtcccttggcgacattggcaa 7323415

                                                                           
Query: 454     gacatttggtgctgcatgcagtatgataggtggcaagaagctaggaaatatgcatgatgc 513
               |||| | ||| |||| |||||| ||||   |||||||||||||| |||| | ||||||||
Sbjct: 7323414 gacactcggtactgcttgcagtttgatcactggcaagaagctagaaaatcttcatgatgc 7323355

                                                                           
Query: 514     actctcaaacactagaactgatggtattggcgccctgatacgcgagggggcagctgcata 573
               ||| ||||||||| |||||||||||| ||| || ||| | |||||||| |||||||||||
Sbjct: 7323354 actttcaaacactggaactgatggtactggtgctctgctccgcgagggagcagctgcata 7323295

                        
Query: 574     cctcaactc 582
               |||||||||
Sbjct: 7323294 cctcaactc 7323286



 Score =  141 bits (71), Expect = 3e-30
 Identities = 123/139 (88%), Gaps = 1/139 (0%)
 Strand = Plus / Minus

                                                                           
Query: 16      tgtctactctgcacatactgagagc-aagatgggtggcaaggttcttctgatgagtgctg 74
               ||||| ||||||| ||||||||||| |||||| || |||||||||||||||| |||| ||
Sbjct: 7324237 tgtcttctctgcagatactgagagccaagatgagtagcaaggttcttctgatcagtggtg 7324178

                                                                           
Query: 75      tcttggtggggcttgtttcactgagctcctgcaggagcctgggagagttgcatgagcaga 134
               || ||||||||||  |||| |||||||| |||||||||||||||||||||  ||| ||||
Sbjct: 7324177 tcctggtggggctcctttctctgagctcatgcaggagcctgggagagttgtctgaacaga 7324118

                                  
Query: 135     agacctactcttcttctac 153
               |||||||||||||| ||||
Sbjct: 7324117 agacctactcttctactac 7324099



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                           
Query: 236     acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 295
               |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| 
Sbjct: 7323735 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 7323676

                                      
Query: 296     acgccatcttacggcactacacc 318
               || ||||||||||||||||||||
Sbjct: 7323675 acaccatcttacggcactacacc 7323653



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                           
Query: 251     ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 310
               |||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 7323696 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 7323637

                                          
Query: 311     actacaccgagcaccccaagtacacct 337
               || ||||| |||||||| || ||||||
Sbjct: 7323636 acgacaccaagcacccccagcacacct 7323610



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 212     acaccgacaccaacttacggtactacaccaac 243
               ||||| |||||| ||||||| |||||||||||
Sbjct: 7323681 acaccaacaccatcttacggcactacaccaac 7323650



to top

>dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0035N08
          Length = 136267

 Score =  153 bits (77), Expect = 8e-34
 Identities = 161/189 (85%)
 Strand = Plus / Minus

                                                                         
Query: 394   ctggaagaatcacccagacgctataattgcagctattgggtcccttggcaacatcggcaa 453
             ||||||||| || ||||| | ||| ||  |||||||||||||||||||| |||| |||||
Sbjct: 99282 ctggaagaaccatccagatgttatcatctcagctattgggtcccttggcgacattggcaa 99223

                                                                         
Query: 454   gacatttggtgctgcatgcagtatgataggtggcaagaagctaggaaatatgcatgatgc 513
             |||| | ||| |||| |||||| ||||   |||||||||||||| |||| | ||||||||
Sbjct: 99222 gacactcggtactgcttgcagtttgatcactggcaagaagctagaaaatcttcatgatgc 99163

                                                                         
Query: 514   actctcaaacactagaactgatggtattggcgccctgatacgcgagggggcagctgcata 573
             ||| ||||||||| |||||||||||| ||| || ||| | |||||||| |||||||||||
Sbjct: 99162 actttcaaacactggaactgatggtactggtgctctgctccgcgagggagcagctgcata 99103

                      
Query: 574   cctcaactc 582
             |||||||||
Sbjct: 99102 cctcaactc 99094



 Score =  141 bits (71), Expect = 3e-30
 Identities = 123/139 (88%), Gaps = 1/139 (0%)
 Strand = Plus / Minus

                                                                          
Query: 16     tgtctactctgcacatactgagagc-aagatgggtggcaaggttcttctgatgagtgctg 74
              ||||| ||||||| ||||||||||| |||||| || |||||||||||||||| |||| ||
Sbjct: 100045 tgtcttctctgcagatactgagagccaagatgagtagcaaggttcttctgatcagtggtg 99986

                                                                          
Query: 75     tcttggtggggcttgtttcactgagctcctgcaggagcctgggagagttgcatgagcaga 134
              || ||||||||||  |||| |||||||| |||||||||||||||||||||  ||| ||||
Sbjct: 99985  tcctggtggggctcctttctctgagctcatgcaggagcctgggagagttgtctgaacaga 99926

                                 
Query: 135    agacctactcttcttctac 153
              |||||||||||||| ||||
Sbjct: 99925  agacctactcttctactac 99907



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                         
Query: 236   acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 295
             |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| 
Sbjct: 99543 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 99484

                                    
Query: 296   acgccatcttacggcactacacc 318
             || ||||||||||||||||||||
Sbjct: 99483 acaccatcttacggcactacacc 99461



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                         
Query: 251   ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 310
             |||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 99504 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 99445

                                        
Query: 311   actacaccgagcaccccaagtacacct 337
             || ||||| |||||||| || ||||||
Sbjct: 99444 acgacaccaagcacccccagcacacct 99418



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 212   acaccgacaccaacttacggtactacaccaac 243
             ||||| |||||| ||||||| |||||||||||
Sbjct: 99489 acaccaacaccatcttacggcactacaccaac 99458



to top

>dbj|AK058752.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-H10, full
           insert sequence
          Length = 377

 Score =  109 bits (55), Expect = 1e-20
 Identities = 88/99 (88%)
 Strand = Plus / Plus

                                                                       
Query: 484 tggcaagaagctaggaaatatgcatgatgcactctcaaacactagaactgatggtattgg 543
           |||||||||||||| |||| | ||||||||||| ||||||||| |||||||||||| |||
Sbjct: 9   tggcaagaagctagaaaatcttcatgatgcactttcaaacactggaactgatggtactgg 68

                                                  
Query: 544 cgccctgatacgcgagggggcagctgcatacctcaactc 582
            || ||| | |||||||| ||||||||||||||||||||
Sbjct: 69  tgctctgctccgcgagggagcagctgcatacctcaactc 107



to top

>gb|AC010242.7| Homo sapiens chromosome 5 clone CTC-359E10, complete sequence
          Length = 174293

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 358   tccaaagaagcatggattcattg 380
             |||||||||||||||||||||||
Sbjct: 29024 tccaaagaagcatggattcattg 29046



to top

>gb|AC008816.8| Homo sapiens chromosome 5 clone CTD-2122K17, complete sequence
          Length = 174293

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 358   tccaaagaagcatggattcattg 380
             |||||||||||||||||||||||
Sbjct: 29024 tccaaagaagcatggattcattg 29046



to top

>gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, complete sequence
          Length = 133790

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 358   tccaaagaagcatggattcattg 380
             |||||||||||||||||||||||
Sbjct: 43691 tccaaagaagcatggattcattg 43669



to top

>gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5, complete sequence
          Length = 203043

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 358   tccaaagaagcatggattcattg 380
             |||||||||||||||||||||||
Sbjct: 91385 tccaaagaagcatggattcattg 91407



to top

>gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, complete sequence
          Length = 256158

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 334    accttcccatgaagtccctgc 354
              |||||||||||||||||||||
Sbjct: 115173 accttcccatgaagtccctgc 115193



to top

>gb|AY582740.1| Chlamydomonas reinhardtii Fe-hydrogenase assembly protein (HydG)
           mRNA, complete cds
          Length = 1704

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 318 cgagcaccccaagtacacctt 338
           |||||||||||||||||||||
Sbjct: 675 cgagcaccccaagtacacctt 695



to top

>gb|AC129886.3| Atelerix albiventris clone LB4-234A16, complete sequence
          Length = 176448

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 509   gatgcactctcaaacactagaactg 533
             ||||||||||||||| |||||||||
Sbjct: 18448 gatgcactctcaaactctagaactg 18472



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 509   gatgcactctcaaacactagaactg 533
             ||||||||||||||| |||||||||
Sbjct: 17278 gatgcactctcaaactctagaactg 17254



to top

>gb|AC156980.9| Mus musculus chromosome 1, clone RP23-191A12, complete sequence
          Length = 224673

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 45     tgggtggcaaggttcttctgatgag 69
              ||||||||||||||| |||||||||
Sbjct: 168930 tgggtggcaaggttcatctgatgag 168954



to top

>gb|AC159301.2| Mus musculus BAC clone RP23-213B1 from chromosome 13, complete sequence
          Length = 188633

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 490    gaagctaggaaatatgcatga 510
              |||||||||||||||||||||
Sbjct: 108440 gaagctaggaaatatgcatga 108420



to top

>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold
          Length = 2136267

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 509    gatgcactctcaaacactagaactg 533
              ||||||||||||||| |||||||||
Sbjct: 627720 gatgcactctcaaactctagaactg 627744



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 509    gatgcactctcaaacactagaactg 533
              ||||||||||||||| |||||||||
Sbjct: 626550 gatgcactctcaaactctagaactg 626526



to top

>gb|AC137970.10| Mus musculus chromosome 3, clone RP23-438E13, complete sequence
          Length = 212827

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 12     ctgttgtctactctgcacat 31
              ||||||||||||||||||||
Sbjct: 177039 ctgttgtctactctgcacat 177020



to top

>gb|AC115865.9| Mus musculus chromosome 3, clone RP24-314I8, complete sequence
          Length = 200362

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    ctgttgtctactctgcacat 31
             ||||||||||||||||||||
Sbjct: 81167 ctgttgtctactctgcacat 81148



to top

>gb|AC145959.3| Gallus gallus chromosome UNK clone CH261-17M10, complete sequence
          Length = 183075

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     tgcttattctgttgtctact 23
             ||||||||||||||||||||
Sbjct: 86325 tgcttattctgttgtctact 86344



to top

>gb|AC011558.6| Homo sapiens chromosome 19 clone LLNLR-291F12, complete sequence
          Length = 43128

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   ctcctgcaggagcctgggag 119
             ||||||||||||||||||||
Sbjct: 42852 ctcctgcaggagcctgggag 42833



to top

>gb|AY113188.1| Mastigamoeba balamuthi aldehyde-alcohol dehydrogenase E (aadhE1)
            gene, partial cds
          Length = 3207

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 553  acgcgagggggcagctgcat 572
            ||||||||||||||||||||
Sbjct: 1738 acgcgagggggcagctgcat 1719



to top

>gb|AC148763.14| Medicago truncatula clone mth2-29o24, complete sequence
          Length = 104879

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   aacccgacaccgacaccaac 225
             ||||||||||||||||||||
Sbjct: 15886 aacccgacaccgacaccaac 15867



to top

>emb|BX470154.5| Zebrafish DNA sequence from clone CH211-81N22, complete sequence
          Length = 158249

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 460    tggtgctgcatgcagtatga 479
              ||||||||||||||||||||
Sbjct: 114553 tggtgctgcatgcagtatga 114572



to top

>gb|AC093066.2| Homo sapiens chromosome 19 clone LLNLR-237C1, complete sequence
          Length = 5054

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  ctcctgcaggagcctgggag 119
            ||||||||||||||||||||
Sbjct: 1337 ctcctgcaggagcctgggag 1318



to top

>gb|AC093597.3| Homo sapiens BAC clone RP11-187O17 from 4, complete sequence
          Length = 17211

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 334   accttcccatgaagtccctg 353
             ||||||||||||||||||||
Sbjct: 10846 accttcccatgaagtccctg 10827



to top

>gb|AF142686.1| Cyclolobium nutans maturase-like protein (matK) gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 2503

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 360 caaagaagcatggattcattggat 383
           |||||||||| |||||||||||||
Sbjct: 701 caaagaagcagggattcattggat 678



to top

>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 362     aagaagcatggattcattgg 381
               ||||||||||||||||||||
Sbjct: 2827466 aagaagcatggattcattgg 2827485



to top

>emb|AJ342722.1|HSA342722 Homo sapiens genomic sequence surrounding NotI site, clone NR1-JG2R
          Length = 788

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 100 ctcctgcaggagcctgggag 119
           ||||||||||||||||||||
Sbjct: 467 ctcctgcaggagcctgggag 448


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,149,859
Number of Sequences: 3902068
Number of extensions: 4149859
Number of successful extensions: 73539
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73424
Number of HSP's gapped (non-prelim): 97
length of query: 582
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 559
effective length of database: 17,143,297,704
effective search space: 9583103416536
effective search space used: 9583103416536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top