ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags18k21 |
|---|---|
| Clone Library Name | barley_pub |
>RLUD_ZYMMO (P50513) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 317 Score = 146 bits (369), Expect = 5e-35 Identities = 92/215 (42%), Positives = 119/215 (55%), Gaps = 1/215 (0%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 IV+EDEHLLVVNKPA MVVHPA GN + TLVNA+L+HC Sbjct: 84 IVFEDEHLLVVNKPAGMVVHPAAGNYDNTLVNALLYHCA--------------------- 122 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 G++S + RPGIVHR+DK TSGLLVVAK + +HA LA QF Sbjct: 123 --------------GKLSGI--GGVARPGIVHRIDKDTSGLLVVAKTDPAHAGLAAQFAD 166 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRM-VAAPGSGHRYAKHAASRYKVREV 559 H+INR Y ++ G PS ++ P++R NR +M + + G G R H R + Sbjct: 167 HSINRRYRAIVDGHPS-LQGHVDAPLARSSVNRQKMAIVSDGRGKRAVTH------YRMI 219 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 ++L+E RLETGRTHQ+R H +G+ LLGD Sbjct: 220 TPLKNASLIECRLETGRTHQVRVHMSSIGHSLLGD 254
>YLYB_BACSU (Q45480) Hypothetical RNA pseudouridine synthase ylyB (EC 5.4.99.-)| (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 303 Score = 137 bits (344), Expect = 4e-32 Identities = 85/215 (39%), Positives = 112/215 (52%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 +I YED+ +LVVNKP MVVHPAPG+ GTLVN ++ HC Sbjct: 81 DIYYEDQDVLVVNKPRGMVVHPAPGHLTGTLVNGLMAHCT-------------------- 120 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 ++S ++RPGIVHR+DK TSGLL+VAK++ +H L Q Sbjct: 121 ----------------DLSGI--NGVMRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLV 162 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 T+ R Y ++ G+ S + I+ PI RD +R M R K+A + + V E Sbjct: 163 NKTVTRKYTAVVHGLISHDDGTIDAPIGRDKKDRQSMTVT-----RDGKNAVTHFHVLEG 217 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 F LVE +LETGRTHQIR H KY+G PL GD Sbjct: 218 F--QDFTLVECQLETGRTHQIRVHMKYIGFPLAGD 250
>YBC5_CHLVI (O50310) Hypothetical RNA pseudouridine synthase in bchI 5'region| (EC 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 327 Score = 137 bits (344), Expect = 4e-32 Identities = 85/215 (39%), Positives = 116/215 (53%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 I+YED+ L+V++K A MVVHPA GN GTL NAILHH Sbjct: 79 ILYEDDDLMVIDKEAGMVVHPAFGNWTGTLANAILHH----------------------- 115 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 +G+ + E+ + +RPGIVHRLDK TSGL+++AK+ + +LA QF Sbjct: 116 -------------LGKDADELDKTEMRPGIVHRLDKDTSGLIIIAKNPTALHKLARQFAN 162 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVF 562 + +VY ++ GVP S I+ I R NR M P G KHA + Y+V E Sbjct: 163 RQVEKVYKAIVWGVPKAESGTIKTNIGRSHKNRKVMANFPYEGAE-GKHAITDYQVVEDL 221 Query: 563 CGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 G +L++ L TGRTHQIR H ++LG+ +LGDE Sbjct: 222 --GYFSLMDVTLHTGRTHQIRVHLQHLGHSILGDE 254
>YMDA_CHLAU (Q45826) Hypothetical RNA pseudouridine synthase in mdh 5'region| (EC 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) (ORFA) (Fragment) Length = 253 Score = 135 bits (341), Expect = 8e-32 Identities = 80/215 (37%), Positives = 117/215 (54%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 ++VYED + V+NKPA MVVHPAPG+ GTLVNA+L Sbjct: 29 DVVYEDADIAVINKPAGMVVHPAPGHPRGTLVNALL------------------------ 64 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 ++ + E+R PGIVHRLD+ TSGLLV+A+ + + L +Q + Sbjct: 65 ----------ARYPDLAIGGELR-----PGIVHRLDRDTSGLLVIARHDQAMRSLVDQQQ 109 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 + ++Y +L G P P + I+ PI RDP +R+RM P + A + Y++ + Sbjct: 110 ARRMRKIYQALVIGRP-PETGTIDAPIGRDPRDRLRMAVVPD-----GRPARTHYRLLDT 163 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 F G +L+E +LETGRTHQIR H ++LG P++GD Sbjct: 164 F--GDYSLLEVQLETGRTHQIRVHLRHLGYPIVGD 196
>Y1629_SYNY3 (P74346) Hypothetical RNA pseudouridine synthase slr1629 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 327 Score = 130 bits (328), Expect = 3e-30 Identities = 79/215 (36%), Positives = 113/215 (52%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 +I+YEDE L+++NKPA +VVHP PG+ +GT+VNA+L HC Sbjct: 99 DILYEDEQLIIINKPAGLVVHPGPGHPDGTVVNALLAHCPDLA----------------- 141 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 IG V RPGIVHRLDK T+G +VVAK E + L Q K Sbjct: 142 -------------GIGGVQ--------RPGIVHRLDKDTTGAMVVAKTELALHNLQVQLK 180 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 T R+Y + G P + +P+ R P +R +M P + + A + +++ E Sbjct: 181 EKTARRLYWGIVYGSPKEIQGTVNLPVGRHPGDRQKMGIVP--VEKGGREAVTHWRLLER 238 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 G + +E++LETGRTHQIR H+K +G+PL+GD Sbjct: 239 I--GNHSWLEFQLETGRTHQIRVHSKQMGHPLVGD 271
>RLUD_RALSO (Q8XYX8) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 358 Score = 127 bits (318), Expect = 4e-29 Identities = 82/218 (37%), Positives = 114/218 (52%), Gaps = 3/218 (1%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 ++VYED+ LLV+NKPA +VVHPA GN +GT++N +LH + Sbjct: 117 DVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLNGLLHRYPQAA----------------- 159 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 + R GIVHRLDK TSGL+VVA+ + L Q + Sbjct: 160 ------------------------GLPRAGIVHRLDKETSGLMVVARTLPAQTDLVRQLQ 195 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRM-VAAPGSGHRYAKHAASRYKVRE 556 T+ R Y++L G +P + I+ PI RDP +R RM + SG K A + +K + Sbjct: 196 ARTVKRTYLALVWG-ETPEAGTIDAPIGRDPRDRTRMAIIETASG----KPARTHFKTLD 250 Query: 557 VFCGGGS--ALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 V G + +LV+ +LETGRTHQIR H + G+PLLGD Sbjct: 251 VVDLGRAQVSLVQCQLETGRTHQIRVHFESEGHPLLGD 288
>RLUD_NEIMA (Q9JVB6) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 374 Score = 125 bits (313), Expect = 1e-28 Identities = 83/215 (38%), Positives = 109/215 (50%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 +IVYED+ ++VVNKPA +VVHPA GN GTL+N +L HC Sbjct: 106 DIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHCP-------------------- 145 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 E+S I R GIVHRLDK TSGL+VVAK + L Q + Sbjct: 146 ----------------ELSQ-----IPRAGIVHRLDKETSGLMVVAKTLPAQNSLVWQLQ 184 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 T+ R+Y ++ G+ P +IE I RDP+NR++M G K A + KV E Sbjct: 185 ERTVKRIYRAVANGI-VPFDGKIETQIGRDPHNRLKMAVVKFGG----KPAVTHVKVLER 239 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 + + +E LETGRTHQIR H + +PL GD Sbjct: 240 YL--AHSYIECSLETGRTHQIRVHMREANHPLAGD 272
>RLUD_PSEAE (P33640) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 320 Score = 124 bits (310), Expect = 3e-28 Identities = 78/214 (36%), Positives = 113/214 (52%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 IVYEDEH+LV++KPA +VVHPA G+ +GTL+NA+L+H Sbjct: 85 IVYEDEHILVIDKPAGLVVHPAAGHQDGTLLNALLYH----------------------- 121 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 + ++++ + R GIVHRLDK T+GL+VVAK +H +L Q + Sbjct: 122 -------------VPDIAN-----VPRAGIVHRLDKDTTGLMVVAKTLEAHTKLVAQLQA 163 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVF 562 +++R+Y ++ GV + + I+ PI R R +M K A S Y+V E F Sbjct: 164 RSVSRIYEAIVIGVIT-SGGTIDAPIGRHGVQRQKMAVVDA-----GKVAVSHYRVLERF 217 Query: 563 CGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 V +LETGRTHQIR H ++G PL+GD Sbjct: 218 RAHTHTRV--KLETGRTHQIRVHMSHIGYPLVGD 249
>RLUD_NEIMB (Q9K0B0) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 374 Score = 122 bits (307), Expect = 7e-28 Identities = 81/215 (37%), Positives = 108/215 (50%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 +IVYED+ ++VVNKPA +VVHPA GN GTL+N +L HC Sbjct: 106 DIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHCP-------------------- 145 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 E+S + R GIVHRLDK TSGL+VVAK + L Q + Sbjct: 146 ----------------ELSQ-----VPRAGIVHRLDKETSGLMVVAKTLPAQNSLVRQLQ 184 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 T+ R+Y ++ G+ P +IE I RDP+NR++M G K A + KV E Sbjct: 185 ERTVKRIYRAVANGI-VPFDGKIETQIGRDPHNRLKMAVVKFGG----KPAVTHVKVLER 239 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 + + +E LETGRTHQIR H + +PL D Sbjct: 240 YL--THSYIECSLETGRTHQIRVHMREANHPLAAD 272
>RLUD_PASMU (Q9CKA6) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 324 Score = 122 bits (306), Expect = 1e-27 Identities = 76/216 (35%), Positives = 106/216 (49%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 NIVYED+ +LV+NKP VVHP GNA+GT++NA+L+H Sbjct: 84 NIVYEDDDILVINKPKDFVVHPGAGNASGTVLNALLYHYP-------------------- 123 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 I EV R GIVHRLDK T+GL+V+AK + +L + Sbjct: 124 -------------AIAEVP--------RAGIVHRLDKDTTGLMVIAKTIPAQTKLVRDLQ 162 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 I R Y ++ CG+ + ++ P++R P R M H K A + Y++ E Sbjct: 163 KRKITREYEAIACGIMT-KGGMVDQPMARHPTKRTHMAV-----HPMGKPAVTHYRIMER 216 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 F + RLETGRTHQIR H ++ +PLLGD+ Sbjct: 217 F--RNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQ 250
>RLUD_NITEU (Q82WZ5) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 344 Score = 120 bits (302), Expect = 3e-27 Identities = 78/214 (36%), Positives = 109/214 (50%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 I++ED+HL++++KPA +VVHP GN +GTL+NA+L+H Sbjct: 111 ILFEDDHLIIIDKPAGLVVHPGNGNWHGTLLNALLNHAP--------------------- 149 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 ++S + R GIVHRLDK T+GLLVVAK + LA Q + Sbjct: 150 ---------------QLSQ-----VPRAGIVHRLDKDTTGLLVVAKTIEAQFDLARQLQQ 189 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVF 562 T+ R Y++L G + ++ PI R P +R RM + K A + Y+V E F Sbjct: 190 RTVKRHYLALVLGKLEKDGV-VDAPIGRHPIHRTRMAVV-----QNGKPARTHYRVLEKF 243 Query: 563 CGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 S L+ LETGRTHQIR H +G+PL GD Sbjct: 244 T--ASTLLHCSLETGRTHQIRVHLLSIGHPLAGD 275
>Y1758_AQUAE (O67638) Hypothetical RNA pseudouridine synthase aq_1758 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 316 Score = 120 bits (301), Expect = 4e-27 Identities = 76/215 (35%), Positives = 109/215 (50%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 NI+YEDE + VV KP +VVHP+PG +GTLVNA+L+H K + Sbjct: 83 NIIYEDEDIAVVEKPCGLVVHPSPGYTSGTLVNALLYHIKDLS----------------- 125 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 +IG V RPGIVHRLDK T+G++V+AK+ +H L QF+ Sbjct: 126 -------------SIGGVE--------RPGIVHRLDKETAGVMVIAKNNTAHRNLVRQFQ 164 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 + Y L G+ + I+ PI+R P +R R + K A + Y V + Sbjct: 165 ERKTEKFYKVLVKGLVKKDYGAIDTPIARHPVDRKRFWV-----RKEGKEALTEYWVLKR 219 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 + L++ ++ TGRTHQIR H +G+P+LGD Sbjct: 220 YEKYEITLLKVKIHTGRTHQIRVHFASIGHPVLGD 254
>RLUD_XYLFT (Q87AR7) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 331 Score = 119 bits (299), Expect = 6e-27 Identities = 73/215 (33%), Positives = 105/215 (48%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 +I+YEDEH+ V+NKPA +VVHP GN +GTLVNA+LH Sbjct: 91 DILYEDEHVFVINKPAGLVVHPGAGNPDGTLVNALLHR---------------------- 128 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 A+ R G+VHRLDK TSG++VVA+ + L EQ Sbjct: 129 -------------------DPALAAVPRAGVVHRLDKDTSGVMVVARTLQAQTALVEQLS 169 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 ++R Y+++ + + I R P +R+RM + K A + Y++RE Sbjct: 170 SRQVHRQYLAVVVSA-LVSGGTVNAAIERHPRDRLRMEVSD-----TGKEAVTHYRLRER 223 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 F +E RL+TGRTHQIR H +L +P++GD Sbjct: 224 F--RAHTALECRLDTGRTHQIRVHMAHLRHPIVGD 256
>RLUD_XYLFA (Q9PET9) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 331 Score = 119 bits (299), Expect = 6e-27 Identities = 73/215 (33%), Positives = 105/215 (48%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 +I+YEDEH+ V+NKPA +VVHP GN +GTLVNA+LH Sbjct: 91 DILYEDEHVFVLNKPAGLVVHPGAGNPDGTLVNALLHR---------------------- 128 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 A+ R G+VHRLDK TSG++VVA+ + L EQ Sbjct: 129 -------------------DPALAAVPRAGVVHRLDKDTSGVMVVARTLQAQTALVEQLS 169 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 ++R Y+++ + + I R P +R+RM + K A + Y++RE Sbjct: 170 SRQVHRQYLAVVVSA-LVSGGTVNAAIERHPRDRLRMAVSD-----TGKEAVTHYRLRER 223 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 F +E RL+TGRTHQIR H +L +P++GD Sbjct: 224 F--RAHTALECRLDTGRTHQIRVHMAHLRHPIVGD 256
>RLUD_XANCP (Q8P682) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 331 Score = 119 bits (297), Expect = 1e-26 Identities = 72/215 (33%), Positives = 106/215 (49%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 N++YED+H+LV++KPA +VVHP GN +GTLVNA+L Sbjct: 91 NVLYEDDHVLVIDKPAGLVVHPGAGNPDGTLVNALLFR---------------------- 128 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 A+ R G+VHRLDK TSG++VVA+ + L EQ Sbjct: 129 -------------------DPNLAAVPRAGVVHRLDKDTSGVMVVARTLQAQTALVEQLS 169 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 ++R Y+++ G + + PI R P +R++M + A + Y++RE Sbjct: 170 ARDVHRQYLAVVVGA-LVSGGTADAPIDRHPRDRLKMAVRDD-----GRDAVTHYRLRER 223 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 F +E RLETGRTHQIR H +L +P++GD Sbjct: 224 F--RAHTALECRLETGRTHQIRVHMAHLKSPIVGD 256
>RLUD_SALTY (P65836) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 115 bits (288), Expect = 1e-25 Identities = 77/216 (35%), Positives = 106/216 (49%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 +IVYED+ +LV+NKP +VVHP GN +GT++NA+LH+ Sbjct: 84 DIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYP-------------------- 123 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 I +V R GIVHRLDK T+GL+VVAK + +L E + Sbjct: 124 -------------PIADVP--------RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQ 162 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 L I R Y ++ G + + PISR P R M S H K A + Y++ E Sbjct: 163 LREITREYEAVAIGHMTAGGT-VNEPISRHPTKRTHM-----SVHPMGKPAVTHYRIMEH 216 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 F + RLETGRTHQIR H ++ +PL+GD+ Sbjct: 217 F--RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDQ 250
>RLUD_SALTI (P65837) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 115 bits (288), Expect = 1e-25 Identities = 77/216 (35%), Positives = 106/216 (49%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 +IVYED+ +LV+NKP +VVHP GN +GT++NA+LH+ Sbjct: 84 DIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYP-------------------- 123 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 I +V R GIVHRLDK T+GL+VVAK + +L E + Sbjct: 124 -------------PIADVP--------RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQ 162 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 L I R Y ++ G + + PISR P R M S H K A + Y++ E Sbjct: 163 LREITREYEAVAIGHMTAGGT-VNEPISRHPTKRTHM-----SVHPMGKPAVTHYRIMEH 216 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 F + RLETGRTHQIR H ++ +PL+GD+ Sbjct: 217 F--RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDQ 250
>RLUD_YERPE (Q8ZBV7) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 114 bits (286), Expect = 2e-25 Identities = 77/229 (33%), Positives = 109/229 (47%), Gaps = 7/229 (3%) Frame = +2 Query: 2 EGTSRW-------NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCL 160 E +RW +IVYED +LV+NKP +VVHP GN +GT++NA+LH+ Sbjct: 72 EEDARWAPQEIPLDIVYEDNDILVINKPRGLVVHPGAGNPDGTVLNALLHYYP------- 124 Query: 161 TRNSIXXXXXXXXXXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAK 340 E+ + + R GIVHRLDK T+GL+VVAK Sbjct: 125 ---------------------------------EIMD-VPRAGIVHRLDKDTTGLMVVAK 150 Query: 341 DEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRY 520 + +L E + I R Y ++ G + R++ PISR R M H Sbjct: 151 TVPAQTRLVEALQAREITREYEAVAIGNMTA-GGRVDEPISRHSTKRTHMAV-----HPM 204 Query: 521 AKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 K A + Y++ E F + RLETGRTHQIR H ++ +PL+GD+ Sbjct: 205 GKPATTHYRIMEHF--RAHTRLRLRLETGRTHQIRVHMSHINHPLVGDQ 251
>RLUD_VIBPA (Q87S65) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 114 bits (285), Expect = 3e-25 Identities = 80/228 (35%), Positives = 104/228 (45%), Gaps = 7/228 (3%) Frame = +2 Query: 2 EGTSRW-------NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCL 160 E RW +IVYED+ ++V+NKP VVHP G +GT++NA+LHH Sbjct: 72 EDEERWEAQDIPLDIVYEDDDIIVINKPRDFVVHPGAGTPDGTVLNALLHHYP------- 124 Query: 161 TRNSIXXXXXXXXXXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAK 340 I EV R GIVHRLDK T+GL+VVAK Sbjct: 125 --------------------------DIAEVP--------RAGIVHRLDKDTTGLMVVAK 150 Query: 341 DEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRY 520 + +L + I R Y ++ G + +++ PI R R M AP Sbjct: 151 TVPAQTRLVRALQKRNITREYEAIAIGRMTAGG-KVDQPIGRHSTKRTLMAVAP-----L 204 Query: 521 AKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 K A + Y+V E F + RLETGRTHQIR H YL +PLLGD Sbjct: 205 GKPAVTHYRVAEHF--REHTRIRLRLETGRTHQIRVHMSYLQHPLLGD 250
>RLUD_VIBVU (Q8DEV0) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 114 bits (284), Expect = 3e-25 Identities = 76/215 (35%), Positives = 102/215 (47%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 +IVYED+ +LV+NKP VVHP G +GT++NA+L HC Sbjct: 85 DIVYEDDDILVINKPRDFVVHPGAGTPDGTVLNALLFHCP-------------------- 124 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 EV E + R GIVHRLDK T+GL+VVAK + +L + Sbjct: 125 --------------------EVAE-VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQ 163 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 I R Y ++ G + +++ PI R R M +P K A + ++V E Sbjct: 164 KRNITREYEAIAIGRMTAGG-KVDKPIGRHATKRTLMAVSP-----MGKPAVTHFRVAEH 217 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 F + RLETGRTHQIR H YL +PLLGD Sbjct: 218 F--REHTRIRLRLETGRTHQIRVHMSYLQHPLLGD 250
>RLUD_SHIFL (P65835) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 113 bits (282), Expect = 6e-25 Identities = 75/215 (34%), Positives = 104/215 (48%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 +IVYEDE ++V+NKP +VVHP GN +GT++NA+LH+ Sbjct: 84 DIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYP-------------------- 123 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 I +V R GIVHRLDK T+GL+VVAK + +L E + Sbjct: 124 -------------PIADVP--------RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQ 162 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 I R Y ++ G + ++ PISR P R M H K A + Y++ E Sbjct: 163 RREITREYEAVAIGHMTAGGT-VDEPISRHPTKRTHMAV-----HPMGKPAVTHYRIMEH 216 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 F + RLETGRTHQIR H ++ +PL+GD Sbjct: 217 F--RVHTRLRLRLETGRTHQIRVHMAHITHPLVGD 249
>RLUD_ECOL6 (P65834) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 113 bits (282), Expect = 6e-25 Identities = 75/215 (34%), Positives = 104/215 (48%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 +IVYEDE ++V+NKP +VVHP GN +GT++NA+LH+ Sbjct: 84 DIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYP-------------------- 123 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 I +V R GIVHRLDK T+GL+VVAK + +L E + Sbjct: 124 -------------PIADVP--------RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQ 162 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 I R Y ++ G + ++ PISR P R M H K A + Y++ E Sbjct: 163 RREITREYEAVAIGHMTAGGT-VDEPISRHPTKRTHMAV-----HPMGKPAVTHYRIMEH 216 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 F + RLETGRTHQIR H ++ +PL+GD Sbjct: 217 F--RVHTRLRLRLETGRTHQIRVHMAHITHPLVGD 249
>RLUD_ECO57 (Q8X9F0) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 113 bits (282), Expect = 6e-25 Identities = 75/215 (34%), Positives = 104/215 (48%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 +IVYEDE ++V+NKP +VVHP GN +GT++NA+LH+ Sbjct: 84 DIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYP-------------------- 123 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 I +V R GIVHRLDK T+GL+VVAK + +L E + Sbjct: 124 -------------PIADVP--------RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQ 162 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 I R Y ++ G + ++ PISR P R M H K A + Y++ E Sbjct: 163 RREITREYEAVAIGHMTAGGT-VDEPISRHPTKRTHMAV-----HPMGKPAVTHYRIMEH 216 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 F + RLETGRTHQIR H ++ +PL+GD Sbjct: 217 F--RVHTRLRLRLETGRTHQIRVHMAHITHPLVGD 249
>RLUD_ECOLI (P33643) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 112 bits (281), Expect = 8e-25 Identities = 74/215 (34%), Positives = 104/215 (48%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 +IVYEDE ++++NKP +VVHP GN +GT++NA+LH+ Sbjct: 84 DIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP-------------------- 123 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 I +V R GIVHRLDK T+GL+VVAK + +L E + Sbjct: 124 -------------PIADVP--------RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQ 162 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 I R Y ++ G + ++ PISR P R M H K A + Y++ E Sbjct: 163 RREITREYEAVAIGHMTAGGT-VDEPISRHPTKRTHMAV-----HPMGKPAVTHYRIMEH 216 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 F + RLETGRTHQIR H ++ +PL+GD Sbjct: 217 F--RVHTRLRLRLETGRTHQIRVHMAHITHPLVGD 249
>RLUD_HAEDU (Q9L7A7) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 325 Score = 112 bits (280), Expect = 1e-24 Identities = 70/216 (32%), Positives = 107/216 (49%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 NIV+ED+ ++++NKP ++VVHP GN +GT++NA+L++ Sbjct: 85 NIVHEDDDIIIINKPKNLVVHPGAGNPDGTVLNALLYYYP-------------------- 124 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 I EV R GI+HRLDK T+GL+VVAK+ + L + Sbjct: 125 -------------PIAEVP--------RAGIIHRLDKDTTGLMVVAKNIPAQTHLVTALQ 163 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 I R Y ++ G+ + +++ P++R P R M H K A + Y++ E Sbjct: 164 KRRITREYEAIASGIMT-QGGKVDEPMARHPTKRTAMAV-----HPMGKPAITHYRIMER 217 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 F + RLETGRTHQIR H ++ +PLLGD+ Sbjct: 218 F--RNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQ 251
>RLUD_VIBCH (Q9KU20) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 324 Score = 112 bits (280), Expect = 1e-24 Identities = 80/228 (35%), Positives = 103/228 (45%), Gaps = 7/228 (3%) Frame = +2 Query: 2 EGTSRW-------NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCL 160 E RW NIVYED+ ++V+NKP VVHP G A+ T++NA+L H Sbjct: 72 EDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYS------- 124 Query: 161 TRNSIXXXXXXXXXXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAK 340 I EV R GIVHRLDK T+GL+VVAK Sbjct: 125 --------------------------PIAEVP--------RAGIVHRLDKDTTGLMVVAK 150 Query: 341 DEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRY 520 + +L + + R Y ++ G + I+ PI R R M +P Sbjct: 151 TVPAQTRLVRALQKRDVTREYEAIVIGTMTAGGM-IDKPIGRHSTKRTLMSVSP-----M 204 Query: 521 AKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 KHA + Y+V E F + RLETGRTHQIR H YL +PLLGD Sbjct: 205 GKHAVTHYRVAEHF--REHTRLRLRLETGRTHQIRVHMAYLQHPLLGD 250
>RLUD_HAEIN (P44445) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 324 Score = 112 bits (279), Expect = 1e-24 Identities = 73/216 (33%), Positives = 104/216 (48%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 NIVYED+ ++V+NKP +VVHP GN NGT++NA+L+H Sbjct: 84 NIVYEDDDIIVINKPKDLVVHPGAGNPNGTVLNALLYHYP-------------------- 123 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 I EV R GIVHRLDK T+GL+VVAK + +L + Sbjct: 124 -------------PIVEVP--------RAGIVHRLDKDTTGLMVVAKTIPAQTKLVRDLQ 162 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 I R Y ++ G+ + ++ P++R R M H K A + Y++ E Sbjct: 163 KRKITREYEAVASGIMT-KGGTVDQPMARHATKRTLMAV-----HPMGKPAVTHYRIMEN 216 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 + + RLETGRTHQIR H ++ +PLLGD+ Sbjct: 217 Y--RNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQ 250
>RLUD_XANAC (Q8PHN2) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 331 Score = 111 bits (278), Expect = 2e-24 Identities = 69/215 (32%), Positives = 103/215 (47%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 +++YEDE +LV++KPA +VVHP GN + TLVNA+L Sbjct: 91 SVLYEDEQVLVIDKPAGLVVHPGAGNPDRTLVNALLFR---------------------- 128 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 ++ R G+VHRLDK TSG++VVA+ + L EQ Sbjct: 129 -------------------DPALASVPRAGVVHRLDKDTSGVMVVARTVQAQTALVEQLS 169 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 ++R Y+++ G + PI R P +R++M + A + Y++RE Sbjct: 170 AREVHRQYLAVVVGA-LVSGGTANAPIDRHPRDRLKMAVRDD-----GRDAVTHYRLRER 223 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 F +E RLETGRTHQIR H +L +P++GD Sbjct: 224 F--RAHTALECRLETGRTHQIRVHMAHLKSPIVGD 256
>YHCT_BACSU (P54604) Hypothetical RNA pseudouridine synthase yhcT (EC 5.4.99.-)| (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 302 Score = 110 bits (274), Expect = 5e-24 Identities = 71/215 (33%), Positives = 98/215 (45%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 +I++ED H+L++NKPA + HP GTL N I +H +I+ TC R+ Sbjct: 84 DILFEDNHMLIINKPAGIATHPNEDGQTGTLANLIAYHYQINGETCKVRH---------- 133 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 VHRLD+ TSG +V AK +HA L +Q + Sbjct: 134 -------------------------------VHRLDQDTSGAIVFAKHRLAHAILDQQLE 162 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 T+ R Y ++ G I PI RD ++ R +PG + A + +KV Sbjct: 163 KKTLKRTYTAIAEGKLRTKKGTINPPIGRDRSHPTRRRVSPG-----GQTAVTHFKVMAS 217 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 +LVE LETGRTHQIR H LG+PL GD Sbjct: 218 NAKERLSLVELELETGRTHQIRVHLASLGHPLTGD 252
>RLUD_BORBU (P70870) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 326 Score = 109 bits (272), Expect = 8e-24 Identities = 73/215 (33%), Positives = 108/215 (50%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 I+YED +++V+NKP ++ HP + + T+VN +L+H K Sbjct: 86 IIYEDSNVIVLNKPQGILSHPGISHWDDTVVNFLLYHIK--------------------- 124 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 + E +RPGIVHRLDK TSG+L+ AK+ + LA+QFK Sbjct: 125 ---------------SLKINFNEEKIRPGIVHRLDKDTSGVLICAKNISTLRFLAQQFKD 169 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVF 562 N+VYI++ G + IE I RD +NR + + G K A + Y++ F Sbjct: 170 KRTNKVYIAIVKGNFNSFFGSIESFIDRDKHNRKKFSVSKDRG----KKALTEYRLLLNF 225 Query: 563 CGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 G +L+ + +TGRTHQ+R H KYL P+LGDE Sbjct: 226 --GEYSLLALKPKTGRTHQLRVHMKYLNFPILGDE 258
>Y745_HELPJ (Q9ZL98) Hypothetical RNA pseudouridine synthase jhp_0682 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 327 Score = 106 bits (264), Expect = 7e-23 Identities = 72/218 (33%), Positives = 105/218 (48%), Gaps = 4/218 (1%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 +++EDE LLV+NKP ++VVH AP TLV+ + Sbjct: 80 VIFEDEDLLVLNKPPNLVVHKAPSVKEPTLVDWL-------------------------- 113 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 + + + + R GIVHRLDK TSG +V+AK+ +H L+EQ K Sbjct: 114 -------KSQNYELSNLGLKERY-----GIVHRLDKDTSGGIVIAKNNFTHVCLSEQLKT 161 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVRE-- 556 + R YI+L +E ++R+PNNR++M+A + AK SRY E Sbjct: 162 KMMGRYYIALLSTPLKEEKMSVECYLTRNPNNRLKMIAL-----KAAKKEKSRYSKSEFT 216 Query: 557 --VFCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 + G L+ +L TGRTHQIRAH +YL ++GD Sbjct: 217 SLLTSQNGMDLIGAKLFTGRTHQIRAHLEYLNRHIIGD 254
>RLUD_BUCAI (P57481) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 312 Score = 105 bits (262), Expect = 1e-22 Identities = 76/215 (35%), Positives = 100/215 (46%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 +IVYED +L++NKPA +VVHP GN +GT++NA+L+H K S Sbjct: 85 DIVYEDSDILIINKPAGLVVHPGSGNKSGTILNALLYHYKNS------------------ 126 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 + + R GIVHRLDK TSGL+V+AK+ S+ L K Sbjct: 127 -----------------------KDLPRAGIVHRLDKDTSGLMVIAKNIFSYNHLLLLLK 163 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 I R Y + G I PI R N R M+ H K + + YKV Sbjct: 164 EKKIIREYEGIVHGKMIAGGT-INKPIMRHYNRRTCMMV-----HHLGKPSVTHYKVLSR 217 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 F + RLETGRTHQIR H ++ PL+GD Sbjct: 218 F--KFHTHIAIRLETGRTHQIRVHMLHIKYPLVGD 250
>RLUD_BUCBP (Q89AD9) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 317 Score = 104 bits (260), Expect = 2e-22 Identities = 73/216 (33%), Positives = 106/216 (49%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 N++YED+ +LV+NK + VVHP GN +GTL+NA+LH + STF Sbjct: 86 NVIYEDDDILVINKQDNFVVHPGAGNTSGTLLNALLH--RDSTFF--------------- 128 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 I R GIVHRLDK T+GL+V+AK+ S+ L +Q K Sbjct: 129 ------------------------NIPRAGIVHRLDKDTTGLMVIAKNNLSYMALIDQIK 164 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 + R Y ++ G + I I R+P R M+ ++ K A + Y++ + Sbjct: 165 CKKVIREYQAIVYG-KVISGGTIVKSIIRNPIKRTTMIV-----NKCGKRAITHYRILKR 218 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 F ++ LETGRTHQIR H Y+ PL+GD+ Sbjct: 219 FT--HHTHLKIILETGRTHQIRTHMLYINFPLVGDK 252
>RLUD_BUCAP (Q8K9E9) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 315 Score = 103 bits (256), Expect = 6e-22 Identities = 73/215 (33%), Positives = 102/215 (47%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 N +YED ++L++NKP +VVHP GN +GT++NA+L+ +T ++ Sbjct: 85 NTIYEDSNILIINKPPGLVVHPGAGNQDGTILNALLYR-----YTNIS------------ 127 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 +I R GI+HRLDK TSGL+V+AK S+ +L K Sbjct: 128 ------------------------SIPRCGIIHRLDKDTSGLMVIAKTIFSYNKLVTLLK 163 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 I R Y + G + + PI R P RI M K + + YK+ Sbjct: 164 KRKIIRKYQGIIKG-NMISGGIVNYPIMRHPFKRICMTT-----DSLGKKSITHYKIINR 217 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 F V +RLETGRTHQIR H ++G PLLGD Sbjct: 218 F--KFHTHVSFRLETGRTHQIRVHMLHIGYPLLGD 250
>Y745_HELPY (O25441) Hypothetical RNA pseudouridine synthase HP0745 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 327 Score = 101 bits (252), Expect = 2e-21 Identities = 69/215 (32%), Positives = 108/215 (50%), Gaps = 1/215 (0%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 +++EDE LLV+NKP ++VVH A TLV+ + Sbjct: 80 VIFEDEDLLVLNKPPNLVVHKALSVKEPTLVDWL-------------------------- 113 Query: 203 XXXXXXXXXXQFTIGEVSS-EVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 +F E+S+ ++E R GIVHRLDK TSG +V+AK+ +H L+EQ K Sbjct: 114 ----------EFKNYELSNLGLKE---RYGIVHRLDKDTSGGIVIAKNNFTHVHLSEQLK 160 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 + R YI+L +E ++R+PNNR++M+A ++++ S + + + Sbjct: 161 TKMMGRYYIALLSTPLKEEKMSVECYLTRNPNNRLKMIALKAVKKEKSRYSKSEF-ISLL 219 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 L+ +L TGRTHQIRAH +YL ++GD Sbjct: 220 TSQNNLNLIGAKLFTGRTHQIRAHLEYLNRHIIGD 254
>RLUD_BLOFL (P59838) Ribosomal large subunit pseudouridine synthase D (EC| 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) Length = 321 Score = 100 bits (250), Expect = 3e-21 Identities = 69/216 (31%), Positives = 104/216 (48%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 NI+YED +LV+NK ++MVVHP G+ GT++NA+L+ Sbjct: 87 NIIYEDNDILVINKASNMVVHPGIGHYQGTVLNALLYRYP-------------------- 126 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 +I ++S + GIV RLDK T+GL+++AK ++ L FK Sbjct: 127 -------------SILKISKQA-------GIVQRLDKDTTGLMIIAKTVSAYDNLLRSFK 166 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 L + + Y ++ G + N+ + P+ R R M S H K A + Y V E Sbjct: 167 LRKVVKEYDAIVYGKFTSNAGVVNQPMRRHFAKRTFM-----SVHYTGKSAVTYYSVVEE 221 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 F + V L+TGRTHQIR H Y+ +PL+GD+ Sbjct: 222 F--KAHSRVRINLKTGRTHQIRVHMAYINHPLVGDQ 255
>Y1567_MYCBO (P0A5T3) Hypothetical RNA pseudouridine synthase Mb1567 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 308 Score = 90.1 bits (222), Expect = 5e-18 Identities = 64/214 (29%), Positives = 97/214 (45%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 I+Y D+ ++ V+KPA + H + G T++ + Sbjct: 83 ILYSDDDIVAVDKPAAVAAHASVGWTGPTVLGGL-------------------------- 116 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 + I +S V E R GIVHRLD GTSG++VVA E ++ L FK Sbjct: 117 -------AAAGYRI--TTSGVHE---RQGIVHRLDVGTSGVMVVAISERAYTVLKRAFKY 164 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVF 562 T+++ Y +L G P P+S I+ PI R + + + +H+ + Y E F Sbjct: 165 RTVDKRYHALVQGHPDPSSGTIDAPIGRHRGHEWKFAIT-----KNGRHSLTHYDTLEAF 219 Query: 563 CGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 ++L++ LETGRTHQIR H L +P GD Sbjct: 220 V--AASLLDVHLETGRTHQIRVHFAALHHPCCGD 251
>Y1540_MYCTU (P0A5T2) Hypothetical RNA pseudouridine synthase Rv1540/MT1592 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 308 Score = 90.1 bits (222), Expect = 5e-18 Identities = 64/214 (29%), Positives = 97/214 (45%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 I+Y D+ ++ V+KPA + H + G T++ + Sbjct: 83 ILYSDDDIVAVDKPAAVAAHASVGWTGPTVLGGL-------------------------- 116 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 + I +S V E R GIVHRLD GTSG++VVA E ++ L FK Sbjct: 117 -------AAAGYRI--TTSGVHE---RQGIVHRLDVGTSGVMVVAISERAYTVLKRAFKY 164 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVF 562 T+++ Y +L G P P+S I+ PI R + + + +H+ + Y E F Sbjct: 165 RTVDKRYHALVQGHPDPSSGTIDAPIGRHRGHEWKFAIT-----KNGRHSLTHYDTLEAF 219 Query: 563 CGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 ++L++ LETGRTHQIR H L +P GD Sbjct: 220 V--AASLLDVHLETGRTHQIRVHFAALHHPCCGD 251
>Y292_MYCPN (P75485) Hypothetical RNA pseudouridine synthase MG209 homolog (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) (H10_orf309) Length = 309 Score = 86.3 bits (212), Expect = 8e-17 Identities = 59/215 (27%), Positives = 97/215 (45%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 +I+YEDE ++VVNKP ++ HP N + +L+ A L HC Sbjct: 81 DILYEDEQIMVVNKPNGLISHPTSFNESESLLGAALFHCNHQPVF--------------- 125 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 +VHRLD+ TSG++++AK++ S L +Q + Sbjct: 126 ------------------------------LVHRLDRDTSGVIMLAKNQSSLLHLQKQLQ 155 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 + R Y++L S I P+ R NN++ G+ AK+A +++ V Sbjct: 156 QRVMKRYYLALVHFPLDSLSGTISAPLERVGNNKVMWKV--GNSSNKAKNAFTKFTVLNQ 213 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 +AL++ L TGRTHQIR H +++ +P+ D Sbjct: 214 --NEKAALIKCELLTGRTHQIRVHLQFIKHPVYND 246
>YJBO_BACSU (O31613) Hypothetical RNA pseudouridine synthase yjbO (EC 5.4.99.-)| (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 283 Score = 85.5 bits (210), Expect = 1e-16 Identities = 62/216 (28%), Positives = 97/216 (44%), Gaps = 1/216 (0%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 +I+YEDEH+LV+NK ++ P+ + +G++ N I+ H + Sbjct: 67 DILYEDEHVLVINKQPYVSSIPSREHPSGSIANGIIDHYQ-------------------- 106 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 ++ VR + +V RLD+ TSG+++VAK +H+ L+ K Sbjct: 107 ------------------TTGVRATV---HLVTRLDRDTSGIMLVAKHRFAHSILSSAQK 145 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 + R Y ++ G + ++ PI R P++ I P G + H V Sbjct: 146 NGLVKRRYAAVVHGRMAQMEGTVDAPIGRHPDSIIERTVTP-DGQKAVTHF-------YV 197 Query: 560 FCGGGS-ALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 C V +LETGRTHQIR H YLG+PL GD Sbjct: 198 TCANDDMTSVALQLETGRTHQIRVHMSYLGHPLCGD 233
>RLUA_VIBVU (Q8DCG0) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 250 Score = 82.4 bits (202), Expect = 1e-15 Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 5/225 (2%) Frame = +2 Query: 8 TSRWN-IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXX 184 T W I++ED+H+L VNKP+ ++ P G L HH Sbjct: 10 TDPWTEIIFEDDHILAVNKPSGLLSVP------GRLPE---HH----------------- 43 Query: 185 XXXXXXXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQL 364 + S ++E +VHRLD TSGL+V AK++ + A L Sbjct: 44 --------------------DSMWSRLQEQYPEIQVVHRLDMSTSGLMVFAKNKRAEAAL 83 Query: 365 AEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD-PNNRIRMVAAPGSGHRYAKHAASR 541 +QF+ ++VY + G +S I++P+ D PN ++ V H + K + + Sbjct: 84 KKQFQYRLTHKVYYARVWGHVEADSGMIDLPLICDWPNRPMQKVC-----HEHGKPSQTA 138 Query: 542 YKV--REVFCGGGSALVEWRLE-TGRTHQIRAHAKYLGNPLLGDE 667 ++V REV G + L TGR+HQ+R H + LG+P++GDE Sbjct: 139 FQVAKREVHANGAQTTIMRLLPVTGRSHQLRVHMQALGHPIVGDE 183
>Y209_MYCGE (P47451) Hypothetical RNA pseudouridine synthase MG209 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 308 Score = 82.4 bits (202), Expect = 1e-15 Identities = 58/214 (27%), Positives = 98/214 (45%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 +++ED+ L+V+NKP+ ++ HP N +L+ A + H +N + Sbjct: 82 VLFEDKDLMVINKPSGLLTHPTTFNEKASLLAACIFHNN--------KNPVY-------- 125 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 +VHRLD+ TSG +VV K++ S L Q + Sbjct: 126 -----------------------------LVHRLDRDTSGAIVVCKNQASLLNLQNQLQN 156 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVF 562 T+ R Y++L + + I P++R NN++ A + AK A +++KV + Sbjct: 157 RTLKRYYVALVHFPFNALTGSINAPLARVNNNKVMFKIAQTA---KAKQAITKFKV--IN 211 Query: 563 CGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 +AL+ L TGRTHQIR H K++ +P+ D Sbjct: 212 QNEKAALISLELLTGRTHQIRVHLKFIQHPVYND 245
>Y505_ZYMMO (O66114) Hypothetical RNA pseudouridine synthase ZMO0505 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 219 Score = 79.3 bits (194), Expect = 9e-15 Identities = 48/133 (36%), Positives = 76/133 (57%), Gaps = 6/133 (4%) Frame = +2 Query: 284 PGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPIS 463 P IVHRLD+ TSG L++A++ H +L+E F + + Y ++ GVP N I++P+ Sbjct: 51 PSIVHRLDRDTSGCLLLARNPKMHRRLSEAFSQGQVKKCYWAILEGVPEKNEGIIDLPLL 110 Query: 464 RDPNNRIRMVAAPGSGHRY-----AKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRA 628 + +++P SG R K A + +++ + G +LV +R ETGRTHQ+R Sbjct: 111 K--------ISSPKSGWRIVADDKGKRAVTHWEI--LAKNKGRSLVAFRPETGRTHQLRV 160 Query: 629 HAKY-LGNPLLGD 664 HA LG P++GD Sbjct: 161 HAATGLGLPIVGD 173
>RLUC_VIBCH (Q9KQH0) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 315 Score = 79.3 bits (194), Expect = 9e-15 Identities = 60/215 (27%), Positives = 91/215 (42%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 IVYED+HLL++NKP+ VH G LH I L + Sbjct: 97 IVYEDDHLLILNKPSGTAVHGGSG----------LHFGAIEALRALRPQARFLE------ 140 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 +VHR+D+ TSG+L+VAK + L QF+ Sbjct: 141 -----------------------------LVHRIDRDTSGILLVAKKRSALRHLQAQFRE 171 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVF 562 T+ + Y +L G + P+ ++ N I V G K + +R+++ E F Sbjct: 172 KTVQKYYYALVMGHWDAECKVVNAPLLKNEVNSIVRVNPNG------KPSETRFRILEKF 225 Query: 563 CGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 + LV+ TGRTHQIR H +Y+G+P+ D+ Sbjct: 226 --AEATLVQASPVTGRTHQIRVHTQYMGHPIAWDD 258
>RLUC_VIBVU (Q8D8G1) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 315 Score = 78.2 bits (191), Expect = 2e-14 Identities = 61/215 (28%), Positives = 91/215 (42%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 I+YED+HLLV+NKP+ VH G G + Sbjct: 96 IIYEDDHLLVLNKPSGTAVHGGSGLKFGAI------------------------------ 125 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 E +R +VHR+D+ TSG+L+VAK + L QF+ Sbjct: 126 ---------------EALRALRPEARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVF 562 T+ + Y +L G + + P+ ++ N I V G K + +R+KV E F Sbjct: 171 KTVQKYYFALVMGEWKNSCKVVNAPLLKNEVNSIVRVNPNG------KPSETRFKVIEKF 224 Query: 563 CGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 + LV+ TGRTHQIR H +Y G+P+ D+ Sbjct: 225 --PQATLVQASPITGRTHQIRVHTQYSGHPIAWDD 257
>RLUC_VIBPA (Q87N15) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 315 Score = 77.4 bits (189), Expect = 4e-14 Identities = 57/215 (26%), Positives = 91/215 (42%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 I+YED+H+L++NKP+ VH G G + Sbjct: 96 IIYEDDHMLILNKPSGTAVHGGSGLKFGAI------------------------------ 125 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 E +R +VHR+D+ TSG+L+VAK + L QF+ Sbjct: 126 ---------------EALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFRE 170 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVF 562 T+ + Y +L G + + P+ ++ N I V G K + +R+K+ E F Sbjct: 171 KTVKKFYFALVMGQWKSSCKVVNAPLLKNEVNSIVRVNPNG------KPSETRFKILEKF 224 Query: 563 CGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 + L++ TGRTHQIR H +Y G+P+ D+ Sbjct: 225 --EQATLIQASPITGRTHQIRVHTQYTGHPIAWDD 257
>RLUA_SALTI (Q8Z9J5) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 218 Score = 76.6 bits (187), Expect = 6e-14 Identities = 61/215 (28%), Positives = 94/215 (43%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 I+Y+DEH++VVNKP+ ++ P A+ K S T + R+ Sbjct: 15 ILYQDEHIMVVNKPSGLLSVPGRLEAH-----------KDSIMTRIQRDYPQAES----- 58 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 VHRLD TSG++VVA + + +L QF+ Sbjct: 59 ------------------------------VHRLDMATSGVIVVALTKAAERELKRQFRE 88 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVF 562 + Y++ G PSP +++P+ D NR + +G K A + Y V E F Sbjct: 89 REPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETG----KPAQTEYNVVE-F 143 Query: 563 CGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 +A V + TGR+HQ+R H LG+P+LGD+ Sbjct: 144 AADNTARVVLKPITGRSHQLRVHMLALGHPILGDQ 178
>RLUA_SALTY (Q8ZRV9) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 218 Score = 75.9 bits (185), Expect = 1e-13 Identities = 61/214 (28%), Positives = 93/214 (43%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 I+Y+DEH++VVNKP+ ++ P A+ K S T + R+ Sbjct: 15 ILYQDEHIMVVNKPSGLLSVPGRLEAH-----------KDSIMTRIQRDYPQAES----- 58 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 VHRLD TSG++VVA + + +L QF+ Sbjct: 59 ------------------------------VHRLDMATSGVIVVALTKAAERELKRQFRE 88 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVF 562 + Y++ G PSP +++P+ D NR + +G K A + Y V E F Sbjct: 89 REPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETG----KPAQTEYNVVE-F 143 Query: 563 CGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 +A V + TGR+HQ+R H LG+P+LGD Sbjct: 144 AADNTARVVLKPITGRSHQLRVHMLALGHPILGD 177
>RLUA_ECO57 (Q8XA10) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 218 Score = 75.1 bits (183), Expect = 2e-13 Identities = 60/214 (28%), Positives = 94/214 (43%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 I+Y+D+H++VVNKP+ ++ PG L K S T + R+ Sbjct: 15 ILYQDDHIMVVNKPSGLL--SVPGR---------LEEHKDSVMTRIQRDYPQAES----- 58 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 VHRLD TSG++VVA + + +L QF+ Sbjct: 59 ------------------------------VHRLDMATSGVIVVALTKAAERELKRQFRE 88 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVF 562 + Y++ G PSP +++P+ D NR + +G K A + Y+V E + Sbjct: 89 RVPKKQYVTRVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETG----KPAQTEYEVVE-Y 143 Query: 563 CGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 +A V + TGR+HQ+R H LG+P+LGD Sbjct: 144 AADNTARVVLKPITGRSHQLRVHMLALGHPILGD 177
>RLUA_SHIFL (P0AA38) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 218 Score = 74.7 bits (182), Expect = 2e-13 Identities = 60/214 (28%), Positives = 94/214 (43%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 I+Y+D+H++VVNKP+ ++ PG L K S T + R+ Sbjct: 15 ILYQDDHIMVVNKPSGLL--SVPGR---------LEEHKDSVMTRIQRDYPQAES----- 58 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 VHRLD TSG++VVA + + +L QF+ Sbjct: 59 ------------------------------VHRLDMATSGVIVVALTKAAERELKRQFRE 88 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVF 562 + Y++ G PSP +++P+ D NR + +G K A + Y+V E + Sbjct: 89 REPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETG----KPAQTEYEVVE-Y 143 Query: 563 CGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 +A V + TGR+HQ+R H LG+P+LGD Sbjct: 144 AADNTARVVLKPITGRSHQLRVHMLALGHPILGD 177
>RLUA_ECOLI (P0AA37) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 218 Score = 74.7 bits (182), Expect = 2e-13 Identities = 60/214 (28%), Positives = 94/214 (43%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 I+Y+D+H++VVNKP+ ++ PG L K S T + R+ Sbjct: 15 ILYQDDHIMVVNKPSGLL--SVPGR---------LEEHKDSVMTRIQRDYPQAES----- 58 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 VHRLD TSG++VVA + + +L QF+ Sbjct: 59 ------------------------------VHRLDMATSGVIVVALTKAAERELKRQFRE 88 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVF 562 + Y++ G PSP +++P+ D NR + +G K A + Y+V E + Sbjct: 89 REPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETG----KPAQTEYEVVE-Y 143 Query: 563 CGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 +A V + TGR+HQ+R H LG+P+LGD Sbjct: 144 AADNTARVVLKPITGRSHQLRVHMLALGHPILGD 177
>RLUA_ECOL6 (Q8FL93) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 218 Score = 74.3 bits (181), Expect = 3e-13 Identities = 59/214 (27%), Positives = 94/214 (43%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 ++Y+D+H++VVNKP+ ++ PG L K S T + R+ Sbjct: 15 VLYQDDHIMVVNKPSGLL--SVPGR---------LEEHKDSVMTRIQRDYPQAES----- 58 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 VHRLD TSG++VVA + + +L QF+ Sbjct: 59 ------------------------------VHRLDMATSGVIVVALTKAAERELKRQFRE 88 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVF 562 + Y++ G PSP +++P+ D NR + +G K A + Y+V E + Sbjct: 89 REPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETG----KPAQTEYEVVE-Y 143 Query: 563 CGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 +A V + TGR+HQ+R H LG+P+LGD Sbjct: 144 AADNTARVVLKPITGRSHQLRVHMLALGHPILGD 177
>RLUA_VIBPA (Q87LD3) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 250 Score = 74.3 bits (181), Expect = 3e-13 Identities = 60/223 (26%), Positives = 99/223 (44%), Gaps = 3/223 (1%) Frame = +2 Query: 8 TSRW-NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXX 184 T W +IV+ED+H+L VNKP+ ++ P G L HH Sbjct: 10 TDPWTDIVFEDDHILAVNKPSGLLSVP------GRLAE---HH----------------- 43 Query: 185 XXXXXXXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQL 364 + S ++E +VHRLD TSGL+V+AK++ + + L Sbjct: 44 --------------------DSMWSRLQEEYPDIQVVHRLDMSTSGLMVLAKNKRAESAL 83 Query: 365 AEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD-PNNRIRMVA-APGSGHRYAKHAAS 538 +QF+ +++Y + G I++P+ D PN ++ V G + A Sbjct: 84 KKQFQFRLTHKIYYARVWGHVEQEEGEIDLPLICDWPNRPLQKVCFEDGKPSKTLFQVAK 143 Query: 539 RYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 R + + G + +V TGR+HQ+R H + LG+P++GDE Sbjct: 144 REEQED---GTKTTIVRLLPITGRSHQLRVHMQALGHPIVGDE 183
>RLUC_BUCAI (P57430) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 314 Score = 73.2 bits (178), Expect = 7e-13 Identities = 58/216 (26%), Positives = 95/216 (43%), Gaps = 1/216 (0%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 I+YED HLL++NKP+ + VH G Sbjct: 94 ILYEDSHLLIINKPSGIAVHGGSG------------------------------------ 117 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 F + E ++R +VHR+D+ TSG+L++AK S L EQ + Sbjct: 118 ---------LNFGVIEYFRKLRPLNKFLELVHRIDRDTSGVLILAKKRTSLVSLHEQLRE 168 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISR-DPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 I + YI+L G+ + +I P+ + N+ +MV G K + + +++++ Sbjct: 169 KKIKKEYIALVHGLWPDHIKKISEPLLKIQFKNKQKMVLIDKKG----KPSETYFQIKKK 224 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 F S L+ +TGRTHQIR HA + G+P+ D+ Sbjct: 225 F--SSSTLLSIIPKTGRTHQIRVHALHAGHPIFFDK 258
>RLUC_RICCN (Q92IS6) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 303 Score = 73.2 bits (178), Expect = 7e-13 Identities = 45/126 (35%), Positives = 66/126 (52%) Frame = +2 Query: 290 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD 469 +VHRLDK TSGLL++AK+ S +L FK + + Y ++T G P N + I + Sbjct: 135 LVHRLDKKTSGLLLIAKNYLSSVKLHNAFKEKLVVKTYFAVTYGKPIKNVGEVRSNIEKS 194 Query: 470 PNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGN 649 + ++ K A + YKV + L+E+ TGR HQ+R HAK LG Sbjct: 195 KGSTPKITDIDSEN---GKLAITYYKVLKSL-DNNLFLIEFTPVTGRMHQLRLHAKLLGC 250 Query: 650 PLLGDE 667 P+LGD+ Sbjct: 251 PILGDD 256
>RLUA_VIBCH (Q9KP71) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 245 Score = 71.6 bits (174), Expect = 2e-12 Identities = 41/126 (32%), Positives = 69/126 (54%) Frame = +2 Query: 290 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD 469 +VHRLD TSGL++ AK +H + L +QF+ +++Y + GV N + +P+ D Sbjct: 59 VVHRLDMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCD 118 Query: 470 PNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGN 649 NR + G + + +RY+V V + +V TGR+HQ+R H + LG+ Sbjct: 119 WPNRPKQKVCFEEG----RDSLTRYQV--VKREEKTTVVRLIPITGRSHQLRVHMQSLGH 172 Query: 650 PLLGDE 667 P++GD+ Sbjct: 173 PIVGDD 178
>RLUC_YERPE (Q8ZFU1) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 320 Score = 71.2 bits (173), Expect = 3e-12 Identities = 59/218 (27%), Positives = 96/218 (44%), Gaps = 3/218 (1%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 I++ED++LLV+NKP+ VH G Sbjct: 95 ILFEDDYLLVLNKPSGTAVHGGSG------------------------------------ 118 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 F + E +R +VHRLD+ TSG+L+VAK + L EQ +L Sbjct: 119 ---------LSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRL 169 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRD---PNNRIRMVAAPGSGHRYAKHAASRYKVR 553 ++ + Y++L G + I+ P+ ++ R+ V++ G K + +R+K+ Sbjct: 170 KSMQKDYLALVRGQWQSHCKAIQAPLLKNIMQSGERVVKVSSEG------KPSETRFKIE 223 Query: 554 EVFCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 E F + LV+ TGRTHQIR HA + G+P+ D+ Sbjct: 224 ERF--EHATLVKASPVTGRTHQIRVHALHAGHPIAFDD 259
>RLUC_PSEAE (Q9HZM9) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 318 Score = 70.9 bits (172), Expect = 3e-12 Identities = 65/216 (30%), Positives = 92/216 (42%), Gaps = 2/216 (0%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 IVYED+ L+VVNKPA + VH G + G + Sbjct: 97 IVYEDKALIVVNKPAGIAVHGGSGVSAGVI------------------------------ 126 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 EV ++R +VHRLD+ TSGLL++AK L E + Sbjct: 127 ---------------EVFRQLRPDAKDIELVHRLDRDTSGLLMIAKKRSMLRHLHEALRG 171 Query: 383 HTI-NRVYISLTCGVPSPNSARIEVPISRDP-NNRIRMVAAPGSGHRYAKHAASRYKVRE 556 I ++ Y +L G + P+ ++ + RMV G K A + ++V Sbjct: 172 EKIVDKRYHALVRGHWPAGKKNVRAPLLKNNLRSGERMVEVNVEG----KDALTEFRVLR 227 Query: 557 VFCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 F G + LVE R TGRTHQIR HAK+ G+ + GD Sbjct: 228 RF-GDFATLVEARPITGRTHQIRVHAKHAGHAIAGD 262
>RIB2_YEAST (Q12362) DRAP deaminase| Length = 591 Score = 70.9 bits (172), Expect = 3e-12 Identities = 54/215 (25%), Positives = 89/215 (41%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 +IV+EDE +LV++KP+ + VHP T+ + S C Sbjct: 162 DIVFEDEDILVIDKPSSIPVHPTGRYRFNTITKMLERQLGYSVHPC-------------- 207 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 +RLDK TSGL+ +AK ++ +Q K Sbjct: 208 --------------------------------NRLDKPTSGLMFLAKTPLGADRMGDQMK 235 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 + + Y++ G ++ P+ R N ++ + A AKHA + ++ V Sbjct: 236 AREVTKEYVARVKGEFPIGIVEVDKPV-RSVNPKVALNAVCEMSDENAKHAKTVFQ--RV 292 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 G +++V+ + TGRTHQIR H +YLG P+ D Sbjct: 293 SYDGQTSIVKCKPLTGRTHQIRVHLQYLGFPIAND 327
>RLUC_RICPR (Q9ZDR7) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 303 Score = 70.9 bits (172), Expect = 3e-12 Identities = 46/126 (36%), Positives = 69/126 (54%) Frame = +2 Query: 290 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD 469 +VHRLDK TSGLL++AK+ S +L FK + + Y ++T G P N ++ I + Sbjct: 135 LVHRLDKETSGLLLIAKNYLSSVKLHNAFKEKLVIKKYFAITYGRPVKNVGTVKSNIGKS 194 Query: 470 PNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGN 649 R+ +A S K A + YK+ + L+E+ TGR HQ+R HA+ LG Sbjct: 195 -KRRLSKIANIDSDD--GKLAITYYKLLKSL-NNNLFLIEFMPVTGRMHQLRLHAQLLGC 250 Query: 650 PLLGDE 667 P+LGD+ Sbjct: 251 PILGDD 256 Score = 29.6 bits (65), Expect = 8.5 Identities = 9/17 (52%), Positives = 15/17 (88%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHM 73 ++YED+HL+ +NKPA + Sbjct: 91 LIYEDDHLIAINKPASL 107
>RLUC_SHIFL (P0AA40) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 319 Score = 70.5 bits (171), Expect = 4e-12 Identities = 59/218 (27%), Positives = 92/218 (42%), Gaps = 3/218 (1%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 I+YED+H+LV+NKP+ VH G Sbjct: 95 ILYEDDHILVLNKPSGTAVHGGSG------------------------------------ 118 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 F + E +R +VHRLD+ TSG+L+VAK + L EQ + Sbjct: 119 ---------LSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRE 169 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRD---PNNRIRMVAAPGSGHRYAKHAASRYKVR 553 + + Y++L G + ++ P+ ++ RI V+ G K + +R+KV Sbjct: 170 KGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEG------KPSETRFKVE 223 Query: 554 EVFCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 E + + LV TGRTHQIR H +Y G+P+ D+ Sbjct: 224 ERY--AFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDD 259
>RLUC_SALTY (Q8ZQ16) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 319 Score = 70.5 bits (171), Expect = 4e-12 Identities = 59/218 (27%), Positives = 92/218 (42%), Gaps = 3/218 (1%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 I+YED+H+LV+NKP+ VH G Sbjct: 95 ILYEDDHILVLNKPSGTAVHGGSG------------------------------------ 118 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 F + E +R +VHRLD+ TSG+L+VAK + L EQ + Sbjct: 119 ---------LSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRE 169 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRD---PNNRIRMVAAPGSGHRYAKHAASRYKVR 553 + + Y++L G + ++ P+ ++ RI V+ G K + +R+KV Sbjct: 170 KGMQKDYLALVRGQWQSHVKTVQAPLLKNILQSGERIVRVSQEG------KPSETRFKVE 223 Query: 554 EVFCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 E + + LV TGRTHQIR H +Y G+P+ D+ Sbjct: 224 ERY--AFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDD 259
>RLUC_SALTI (Q8Z7J7) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 319 Score = 70.5 bits (171), Expect = 4e-12 Identities = 59/218 (27%), Positives = 92/218 (42%), Gaps = 3/218 (1%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 I+YED+H+LV+NKP+ VH G Sbjct: 95 ILYEDDHILVLNKPSGTAVHGGSG------------------------------------ 118 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 F + E +R +VHRLD+ TSG+L+VAK + L EQ + Sbjct: 119 ---------LSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRE 169 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRD---PNNRIRMVAAPGSGHRYAKHAASRYKVR 553 + + Y++L G + ++ P+ ++ RI V+ G K + +R+KV Sbjct: 170 KGMQKDYLALVRGQWQSHVKTVQAPLLKNILQSGERIVRVSQEG------KPSETRFKVE 223 Query: 554 EVFCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 E + + LV TGRTHQIR H +Y G+P+ D+ Sbjct: 224 ERY--AFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDD 259
>RLUC_ECOLI (P0AA39) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 319 Score = 70.5 bits (171), Expect = 4e-12 Identities = 59/218 (27%), Positives = 92/218 (42%), Gaps = 3/218 (1%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 I+YED+H+LV+NKP+ VH G Sbjct: 95 ILYEDDHILVLNKPSGTAVHGGSG------------------------------------ 118 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 F + E +R +VHRLD+ TSG+L+VAK + L EQ + Sbjct: 119 ---------LSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRE 169 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRD---PNNRIRMVAAPGSGHRYAKHAASRYKVR 553 + + Y++L G + ++ P+ ++ RI V+ G K + +R+KV Sbjct: 170 KGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEG------KPSETRFKVE 223 Query: 554 EVFCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 E + + LV TGRTHQIR H +Y G+P+ D+ Sbjct: 224 ERY--AFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDD 259
>RLUC_ECO57 (Q8X8J3) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 319 Score = 70.5 bits (171), Expect = 4e-12 Identities = 59/218 (27%), Positives = 92/218 (42%), Gaps = 3/218 (1%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 I+YED+H+LV+NKP+ VH G Sbjct: 95 ILYEDDHILVLNKPSGTAVHGGSG------------------------------------ 118 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 F + E +R +VHRLD+ TSG+L+VAK + L EQ + Sbjct: 119 ---------LSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRE 169 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRD---PNNRIRMVAAPGSGHRYAKHAASRYKVR 553 + + Y++L G + ++ P+ ++ RI V+ G K + +R+KV Sbjct: 170 KGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEG------KPSETRFKVE 223 Query: 554 EVFCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 E + + LV TGRTHQIR H +Y G+P+ D+ Sbjct: 224 ERY--AFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDD 259
>RLUC_ECOL6 (Q8FIP7) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 319 Score = 69.3 bits (168), Expect = 1e-11 Identities = 59/218 (27%), Positives = 91/218 (41%), Gaps = 3/218 (1%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 I+YED+H+LV+NKP+ VH G Sbjct: 95 ILYEDDHILVLNKPSGTAVHGGSG------------------------------------ 118 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 F + E +R +VHRLD+ TSG+L+VAK + L EQ + Sbjct: 119 ---------LSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRE 169 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRD---PNNRIRMVAAPGSGHRYAKHAASRYKVR 553 + + Y++L G ++ P+ ++ RI V+ G K + +R+KV Sbjct: 170 KGMQKDYLALVRGQWQSYVKSVQAPLLKNILQSGERIVRVSQEG------KPSETRFKVE 223 Query: 554 EVFCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 E + + LV TGRTHQIR H +Y G+P+ D+ Sbjct: 224 ERY--AFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDD 259
>RLUC_BUCAP (Q8K9J8) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 314 Score = 68.9 bits (167), Expect = 1e-11 Identities = 55/217 (25%), Positives = 95/217 (43%), Gaps = 1/217 (0%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 NI+YED +LL++NKP+ + VH G G + Sbjct: 93 NILYEDNYLLIINKPSGIAVHGGSGINLGVI----------------------------- 123 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 E ++R +VHR+D+ TSG+L++AK S L +Q + Sbjct: 124 ----------------EYFRKIRPLEKFLELVHRIDRDTSGVLMLAKKRRSLLSLHKQIR 167 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDP-NNRIRMVAAPGSGHRYAKHAASRYKVRE 556 + + YI+L G+ + ++ P+ + N+ R + G K A + +K+++ Sbjct: 168 EKKVQKKYIALVHGLWPLSLRKVSEPLLKTHLKNKQRKILINKEG----KPAETYFKIKK 223 Query: 557 VFCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 + + LV +TGRTHQIR H + G+P+L D+ Sbjct: 224 QYL--FTTLVSITPKTGRTHQIRVHTLHAGHPILFDK 258
>YK27_CAEEL (O16686) Hypothetical protein K07E8.7 in chromosome IV| Length = 432 Score = 68.2 bits (165), Expect = 2e-11 Identities = 49/148 (33%), Positives = 78/148 (52%), Gaps = 3/148 (2%) Frame = +2 Query: 233 QFTIGEVSSEVREAIVRPG--IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYI 406 Q+ I V ++R R G ++HRLD+ TSG+L+ AK+ + + K ++ YI Sbjct: 173 QYAIHTVLGQLRVNEGRTGLRVLHRLDRATSGVLLFAKNYETDLEFKTTLKQGEWSKEYI 232 Query: 407 SLTCGVPSPNSARIEVPISRDPNNR-IRMVAAPGSGHRYAKHAASRYKVREVFCGGGSAL 583 GV E PI + I+ V G K A SR+ R+++ G ++ Sbjct: 233 CKVDGVFPDEEQVCEQPIGPLVISMGIQCVRPDG------KDAKSRF--RKLWSDGTQSV 284 Query: 584 VEWRLETGRTHQIRAHAKYLGNPLLGDE 667 V+ +ETGRTHQIR H+++LG+P+ GD+ Sbjct: 285 VQVHIETGRTHQIRVHSQFLGHPIAGDQ 312
>RLUC_PASMU (Q9CM51) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 326 Score = 68.2 bits (165), Expect = 2e-11 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 3/218 (1%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 I++EDE LLV+NKP+ + VH G + G + Sbjct: 101 ILFEDECLLVLNKPSGIAVHGGSGLSFGVI------------------------------ 130 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 E +R +VHRLD+ TSG+L+VAK + L EQ + Sbjct: 131 ---------------EALRTLRPDARFLELVHRLDRDTSGILLVAKKRSALRSLHEQLRE 175 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRD---PNNRIRMVAAPGSGHRYAKHAASRYKVR 553 T+ + Y++L G + ++ P+ ++ RI V+ G K + +R+ + Sbjct: 176 KTVQKDYLALVRGQWQSHCKVVKAPLLKNELSSGERIVRVSEQG------KPSETRFSIE 229 Query: 554 EVFCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 E + + LV+ TGRTHQIR H +Y G+P+ D+ Sbjct: 230 ERY--EYATLVKASPVTGRTHQIRVHTQYAGHPIALDD 265
>RLUC_HAEIN (P44433) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 322 Score = 65.9 bits (159), Expect = 1e-10 Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 3/129 (2%) Frame = +2 Query: 290 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD 469 +VHRLD+ TSG+L++AK + L EQ ++ T+ + Y++L G + I+ + ++ Sbjct: 144 LVHRLDRDTSGILLIAKKRSALRNLHEQLRVKTVQKDYLALVRGQWQSHIKVIQASLLKN 203 Query: 470 ---PNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKY 640 RI V+ G K + +R+ + E + + LV+ TGRTHQIR H +Y Sbjct: 204 ELSSGERIVRVSEQG------KPSETRFSIEERYI--NATLVKASPVTGRTHQIRVHTQY 255 Query: 641 LGNPLLGDE 667 G+P+ D+ Sbjct: 256 AGHPIALDD 264
>RLUA_YERPE (Q8ZIK1) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 206 Score = 65.5 bits (158), Expect = 1e-10 Identities = 57/218 (26%), Positives = 93/218 (42%), Gaps = 4/218 (1%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHP--APGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXX 196 ++Y+D+H++VVNKP+ ++ P AP N + Sbjct: 3 VLYQDKHIMVVNKPSGLLSVPGRAPENKDS------------------------------ 32 Query: 197 XXXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQF 376 V + V+ VHRLD TSG++VVA + + +L QF Sbjct: 33 ------------------VMTRVQNDFPTAESVHRLDMATSGVIVVALTKAAERELKRQF 74 Query: 377 KLHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKV-- 550 + + YI+ G + + I++P+ D NR + +G K A + Y+V Sbjct: 75 REREPKKTYIARVWGHLAQDEGLIDLPLICDWPNRPKQKVCYETG----KSAQTEYQVIS 130 Query: 551 REVFCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 R+ GS V+ TGR+HQ+R H +G+P+LGD Sbjct: 131 RD---DDGSTRVKLSPITGRSHQLRVHMLAMGHPILGD 165
>YD36C_YEAST (Q12069) Hypothetical 53.4 kDa protein in PRP9-NAT1 intergenic| region Length = 462 Score = 65.5 bits (158), Expect = 1e-10 Identities = 50/215 (23%), Positives = 96/215 (44%), Gaps = 1/215 (0%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 +++ED++++V++KP+ + VHP + +T T + +N++ Sbjct: 190 VIFEDDNIMVIDKPSGIPVHPTG-------------RYRFNTITKMLQNNLGF------- 229 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 +V P +RLD+ TSGL+ +AK + +Q K Sbjct: 230 ------------------------VVNP--CNRLDRLTSGLMFLAKTPKGADNIGDQLKA 263 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISR-DPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 + + Y++ G +E P+ +P R+ + A + AKHA + + + Sbjct: 264 REVTKEYVAKVVGEFPETEVIVEKPLKLIEP--RLALNAVCQMDEKGAKHAKTVFN--RI 319 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 G +++V+ + TGR+HQIR H +YLG+P+ D Sbjct: 320 SYDGKTSIVKCKPLTGRSHQIRVHLQYLGHPIAND 354
>RLUC_HAEDU (P59835) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 320 Score = 64.7 bits (156), Expect = 2e-10 Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 3/219 (1%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 +I+YED+ +LV+NKP+ + VH G + G + Sbjct: 97 HILYEDDVMLVLNKPSGIGVHGGSGLSFGVI----------------------------- 127 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 E +R +VHR+D+ TSG+L+VAK + L EQ + Sbjct: 128 ----------------EALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRALHEQLR 171 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRD---PNNRIRMVAAPGSGHRYAKHAASRYKV 550 + + Y++L G + I+ P+ ++ RI V+ G K + +R+ + Sbjct: 172 EKVVQKDYLALVRGQWQAHINVIKAPLLKNELQSGERIVKVSEQG------KPSETRFSI 225 Query: 551 REVFCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 E + + L++ TGRTHQIR H +Y G+P+ D+ Sbjct: 226 EERY--PNATLIKASPITGRTHQIRVHTQYAGHPIACDD 262
>Y370_MYCGE (P47610) Hypothetical RNA pseudouridine synthase MG370 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 323 Score = 62.0 bits (149), Expect = 2e-09 Identities = 53/215 (24%), Positives = 87/215 (40%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 I++EDE+++VV+KP +V P ++ L N +L HC F N Sbjct: 90 IIFEDENIIVVDKPTGIVCQPDKKHSIINLSNMLLKHCGYRQFDSNKLNFY--------- 140 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 P HR+D+ TSG+++ AK + +L + FK Sbjct: 141 ---------------------------PQFAHRIDRNTSGIVIGAKTNKALKELNKVFKN 173 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVF 562 + + + Y L G N ++ + NN +V AK ++ ++ Sbjct: 174 NHLTKRYKGLVFG--QFNHLGLQTAYWKKDNNN-GIVTVKWKPFPEAKKISTFFENSSYI 230 Query: 563 CGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 +L+ RL +GRTHQIRA N L+GD+ Sbjct: 231 AQKDMSLITIRLISGRTHQIRACLNLFSNQLVGDK 265
>Y042_HAEIN (P43930) Hypothetical RNA pseudouridine synthase HI0042 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 224 Score = 61.2 bits (147), Expect = 3e-09 Identities = 39/125 (31%), Positives = 64/125 (51%) Frame = +2 Query: 290 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRD 469 +VHRLDK TSGLL++A + S A+ + F H I++ Y++L+ P I + + Sbjct: 47 LVHRLDKVTSGLLILALNAESAAEFSRLFSEHKIHKTYLALSNQKPKKKQGLIIGDMKKA 106 Query: 470 PNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGN 649 ++ + A +R++ V C L + +TG+THQ+R K LG+ Sbjct: 107 REGAWKLCQTKDN------PAITRFE--SVSCEPNLRLFILKPQTGKTHQLRVAMKSLGS 158 Query: 650 PLLGD 664 P+LGD Sbjct: 159 PILGD 163
>TRUC_HAEDU (P59840) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 243 Score = 60.8 bits (146), Expect = 3e-09 Identities = 49/220 (22%), Positives = 92/220 (41%), Gaps = 5/220 (2%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 +I+Y D+ L+ +NKPA M+VH + + TL Sbjct: 4 DILYRDDELIAINKPAGMLVHRSWLDKAETL----------------------------- 34 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 F + + ++ + + +HRLD+ TSG+L+ A + ++EQF+ Sbjct: 35 ------------FAMQTLRDQINQHVFP---IHRLDRPTSGVLLFALNSEMARLMSEQFE 79 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 H + + Y+++ G + I+ P+ + + P + + + KV Sbjct: 80 QHKVEKEYLAIVRGYIA-EKGEIDYPLKVILDKIADKFSQPKAAQQAVTFYQNLAKVEMP 138 Query: 560 FCGGGSALVEWRL-----ETGRTHQIRAHAKYLGNPLLGD 664 + G A + L +TGR HQ+R H K+L +P++GD Sbjct: 139 YSTGKYATTRYSLVALSPKTGRKHQLRRHMKHLFHPIMGD 178
>RLUC_BUCBP (Q89AH2) Ribosomal large subunit pseudouridine synthase C (EC| 5.4.99.-) (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) Length = 315 Score = 59.3 bits (142), Expect = 1e-08 Identities = 56/222 (25%), Positives = 86/222 (38%), Gaps = 8/222 (3%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 I+YED + L++NKP+ M VH G G + N Sbjct: 95 ILYEDNYFLILNKPSGMSVHSGSGINYGMIENL--------------------------- 127 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRP-----GIVHRLDKGTSGLLVVAKDEHSHAQLA 367 I+RP +VHRLD+ TSG+L++AK L Sbjct: 128 -----------------------RILRPYNRYLDLVHRLDRDTSGVLIIAKKRSILRNLH 164 Query: 368 EQFKLHTINRVYISLTCGVPSPNSARIEVPI---SRDPNNRIRMVAAPGSGHRYAKHAAS 538 EQ + I + Y++L GV I P+ S N I + G K + + Sbjct: 165 EQLREKKIKKKYVALVHGVWPDILKSISKPLLKTSSRKNKNIVKIDPKG------KESIT 218 Query: 539 RYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 + +++ + + L+ TGRTHQIR H +L P++ D Sbjct: 219 HFNIKKKYT--KNTLISITPITGRTHQIRVHLLHLNYPIVLD 258
>RLUA_HAEDU (P59831) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 222 Score = 58.9 bits (141), Expect = 1e-08 Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 3/127 (2%) Frame = +2 Query: 296 HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPN---SARIEVPISR 466 HRLD TSG++++A + + +L QF+ + YI+L G + I P+ Sbjct: 61 HRLDMATSGIILLALSKVAEKELKRQFRDREPKKHYIALLWGKLGDRVGQTGEINFPLIC 120 Query: 467 DPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLG 646 D NR R G K A + Y+V E + V++ TGR+HQ+R H+ LG Sbjct: 121 DWENRPRQKICYERG----KKATTHYEVLE-HLANNTTRVKFTPITGRSHQLRVHSLALG 175 Query: 647 NPLLGDE 667 +P++GD+ Sbjct: 176 HPIIGDK 182
>PUS6_YEAST (P53294) Pseudouridylate synthase 6 (EC 5.4.99.-) (Pseudouridine| synthase 6) (tRNA pseudouridine 31 synthase) (PSI31 synthase) (Uracil hydrolyase) Length = 404 Score = 58.2 bits (139), Expect = 2e-08 Identities = 53/230 (23%), Positives = 90/230 (39%), Gaps = 14/230 (6%) Frame = +2 Query: 17 WNIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXX 196 +NIV+EDE +LV++KP+ + VHP T+ + H + C Sbjct: 119 FNIVFEDESILVIDKPSGIPVHPTGQFYQNTITELLKLH-GVDALPC------------- 164 Query: 197 XXXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQF 376 +RLDK TSGLL++AK+ S ++ + Sbjct: 165 ---------------------------------YRLDKITSGLLILAKNSQSAGEIQKSI 191 Query: 377 KLHTINRVYISLTCG--------VPSPNSARI------EVPISRDPNNRIRMVAAPGSGH 514 + + ++Y++ G + + N+A +V + P I G Sbjct: 192 RSRDMIKIYLARVKGRFPHSELILDNENAAETTFEDTSKVTVEMTPIYSIDPKRQFPVGL 251 Query: 515 RYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 +K A +++ F +V + TGRTHQIR H LG+P++ D Sbjct: 252 STSKDAITKFYPIRYFSHADETVVACKPITGRTHQIRIHLARLGHPIVND 301
>Y1592_SYNY3 (P72970) Hypothetical RNA pseudouridine synthase slr1592 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 291 Score = 58.2 bits (139), Expect = 2e-08 Identities = 38/124 (30%), Positives = 56/124 (45%) Frame = +2 Query: 293 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDP 472 +HRL GTSGLL++ + +L+ QF+ H ++Y ++ P I + P Sbjct: 108 LHRLGTGTSGLLLLGRSTLGRRELSRQFREHICRKIYRTVIGPCDLPEKFECHQAIGKIP 167 Query: 473 NNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGNP 652 ++ + A S H + R R +E + TGR HQIR H LG P Sbjct: 168 YPQLGYIYA-ASSHGKPAQSYGRILAR----SPEKTWLEVEIRTGRPHQIRIHLASLGYP 222 Query: 653 LLGD 664 LLGD Sbjct: 223 LLGD 226
>RLUA_HAEIN (P44782) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 219 Score = 57.0 bits (136), Expect = 5e-08 Identities = 55/216 (25%), Positives = 87/216 (40%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 +I+Y+D HL VVNKP+ ++ PGN +A+ Sbjct: 15 DIIYQDNHLCVVNKPSGLL--SVPGNQPQYYDSAM------------------------- 47 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 S V+E HRLD TSG++V A + + +L QF+ Sbjct: 48 -------------------SRVKEKFGFCEPAHRLDMATSGIIVFALSKAADRELKRQFR 88 Query: 380 LHTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREV 559 + Y ++ G + + +P+ D NR R G K A ++++V Sbjct: 89 EREPKKHYQAIVWGHLENDYGEVNLPMICDWENRPRQRLDFVLG----KRAVTKFEVL-A 143 Query: 560 FCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGDE 667 S V+ TGR+HQ+R H LG+P+LGD+ Sbjct: 144 RLPNNSTRVKLTPVTGRSHQLRLHMLALGHPILGDK 179
>RLUA_PASMU (Q9CK02) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 219 Score = 56.2 bits (134), Expect = 8e-08 Identities = 39/124 (31%), Positives = 61/124 (49%) Frame = +2 Query: 296 HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDPN 475 HRLD TSGL++ A + + +L QF+ + Y +L G + + +P+ D Sbjct: 61 HRLDMSTSGLILFALSKVADRELKRQFREREPKKHYQALVWGHLEEDQGEVNLPLICDWE 120 Query: 476 NRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGNPL 655 NR R G K A + Y+V + + V+ TGR+HQ+R H LG+P+ Sbjct: 121 NRPRQKICFERG----KPALTLYEVLARY-PNNTTRVKLTPITGRSHQLRLHMLALGHPI 175 Query: 656 LGDE 667 LGD+ Sbjct: 176 LGDK 179
>Y548_MYCPN (P75230) Hypothetical RNA pseudouridine synthase MG370 homolog (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) (G12_orf326) Length = 326 Score = 56.2 bits (134), Expect = 8e-08 Identities = 52/214 (24%), Positives = 89/214 (41%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 +++EDE L+VV+KPA +V P + L N++L HC + + +NS+ Sbjct: 89 VIFEDEQLIVVDKPAGVVCQPDAKHELFNLANSLLKHCGYNQYF---KNSLSFI------ 139 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 P HR+D+ T GL++ AK + +L F+ Sbjct: 140 ---------------------------PRFAHRIDRNTCGLVIGAKTNQALQELEAVFRH 172 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVF 562 + + + Y L G P + ++D + V A + AK + ++ + Sbjct: 173 NLLMKQYQGLVFG-PFNFKGTQKAYWAKDAYQALVTVKAKPFPN--AKPITTIFENSKYL 229 Query: 563 CGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 +L+ RL +G+THQIRA L L+GD Sbjct: 230 TKLDLSLLTIRLVSGKTHQIRACLNLLNTQLVGD 263
>TRUC_YERPE (Q8ZH72) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 257 Score = 55.5 bits (132), Expect = 1e-07 Identities = 54/225 (24%), Positives = 88/225 (39%), Gaps = 11/225 (4%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 I+Y+DEH++ VNKPA +VH + + N T+ Sbjct: 4 IIYQDEHIVAVNKPAGWLVHRSWLDRNETV------------------------------ 33 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 F + V ++ + + VHRLD+ TSG+L++A L+ QF+ Sbjct: 34 -----------FVMQTVRDQIGQHVYT---VHRLDRPTSGVLLMALSSDVARMLSLQFEQ 79 Query: 383 HTINRVYISLTCGVPSPN-----SARIEVPISRDPNNRIRMVAAPGSGHRYA------KH 529 H I + Y ++ G + E+ D + P H A Sbjct: 80 HQIQKTYHAVVRGYVLEGGTVDYAMAEELDKIADKFAKSDKAPQPSVSHYEALAQVEVPL 139 Query: 530 AASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 A RY+ +LV + ETGR HQ+R H ++ +P++GD Sbjct: 140 AIGRYETARY------SLVALKPETGRKHQLRRHMAHIRHPIIGD 178
>YA32_SCHPO (Q09709) Hypothetical protein C18B11.02c in chromosome I| Length = 394 Score = 55.5 bits (132), Expect = 1e-07 Identities = 57/225 (25%), Positives = 95/225 (42%), Gaps = 11/225 (4%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKIST-FTCLTRNSIXXXXXXXX 199 IV+EDE +V++KPA + VHP + T+++ ++ K S + C Sbjct: 107 IVHEDESYVVIDKPAGVPVHPTGRYNHNTVLHILMKENKCSLLYPC-------------- 152 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 +RLD+ TSGL+ +K + AE+ + Sbjct: 153 --------------------------------NRLDRLTSGLMFFSKSPKA----AEEMR 176 Query: 380 LHTINRV----YISLTCGVPSPNSARI--EVPISRDPNNRIRMVAAPGSG----HRYAKH 529 +H I++ Y++ G PNS + + P+ + AP G H K Sbjct: 177 VHMISKSLKKEYVARVIG-EFPNSGEVICDAPL---------LTVAPTLGLNRIHPDGKE 226 Query: 530 AASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 A++ +K + G ++LV + TGRTHQ+R H +YLG P+ D Sbjct: 227 ASTVFK--RIAFDGHTSLVLCKPLTGRTHQLRVHLQYLGYPIAND 269
>Y956_HELPY (O25610) Hypothetical RNA pseudouridine synthase HP0956 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 242 Score = 55.1 bits (131), Expect = 2e-07 Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 1/126 (0%) Frame = +2 Query: 290 IVHRLDKGTSGLLVVAKDEHS-HAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISR 466 ++HRLDK TSG++++ K+ H + + FK + + Y++LT G+ I PI Sbjct: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIE-EEREINAPILT 146 Query: 467 DPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLG 646 + A + + A + ++ L++ ++TGRTHQIR H K++ Sbjct: 147 -----FKTTKAFSKISKKGQEAVTIITPLKII--NKKTLLKVGIKTGRTHQIRVHLKHIN 199 Query: 647 NPLLGD 664 +P++GD Sbjct: 200 HPIIGD 205
>Y956_HELPJ (Q9ZKP5) Hypothetical RNA pseudouridine synthase jhp_0890 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 242 Score = 54.3 bits (129), Expect = 3e-07 Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 1/126 (0%) Frame = +2 Query: 290 IVHRLDKGTSGLLVVAKDEHS-HAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISR 466 ++HRLDK TSG++++ K+ H + + FK + + Y+++ G+ I PI Sbjct: 88 LLHRLDKETSGVILLVKENSEFHLKAKKAFKDRAVKKEYLAIVQGIIE-EEREINAPILT 146 Query: 467 DPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLG 646 I+ A + + A + ++ L++ ++TGRTHQIR H K++ Sbjct: 147 -----IKTTKAFSKISKKGQEAVTIITPLKII--NKKTLLKVGIKTGRTHQIRVHLKHIN 199 Query: 647 NPLLGD 664 +P++GD Sbjct: 200 HPIIGD 205
>TRUC_VIBPA (Q87MD4) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 246 Score = 53.1 bits (126), Expect = 7e-07 Identities = 53/224 (23%), Positives = 91/224 (40%), Gaps = 10/224 (4%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 IVY+DE+ + VNKPA M+VH + + + T Sbjct: 8 IVYQDEYFVAVNKPAGMLVHRSWLDKHET------------------------------- 36 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 QF + + ++ + + +HRLD+ TSG+LV A +Q+ F Sbjct: 37 ----------QFVMQTLRDQIGQHVFP---LHRLDRPTSGVLVFALSSEVASQVMPMFAE 83 Query: 383 HTINRVYISLTCG-VPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVR-- 553 H + + Y ++ G + + + D ++ S + A+ A + YK Sbjct: 84 HKMEKTYHAIVRGWIEEEGVLDYALKVELD-----KIADKFASQEKEAQEAVTAYKPLAK 138 Query: 554 -EVFCGGGS------ALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 EV G L+E + +TGR HQ+R H +L +P++GD Sbjct: 139 VEVPYSTGKFPTTRYCLMEMKPKTGRKHQLRRHMAHLRHPIVGD 182
>TRUC_VIBCH (Q9KTL4) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 244 Score = 51.6 bits (122), Expect = 2e-06 Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 9/223 (4%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 IVY+DE+L+ VNKPA M+VH + + + T Sbjct: 4 IVYQDEYLVAVNKPAGMLVHRSWLDKHET------------------------------- 32 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 +F + + ++ + + +HRLD+ TSG+LV A +++ F Sbjct: 33 ----------EFVMQTLRDQIGQHVFP---LHRLDRPTSGVLVFALSSQIASEVMPMFAN 79 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRY----KV 550 H + + Y ++ G + ++ P+ + + A + A+ A + Y KV Sbjct: 80 HEMEKTYHAIVRGWIEEANV-LDYPLKEELDKIADKFAKQD---KEAQSAVTAYRPLAKV 135 Query: 551 REVFCGGGSA-----LVEWRLETGRTHQIRAHAKYLGNPLLGD 664 G A L+E + +TGR HQ+R H +L +P++GD Sbjct: 136 ELPIATGKFATTRYCLMEMQPKTGRKHQLRRHMAHLRHPIVGD 178
>TRUC_ECOL6 (Q8FEF9) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 260 Score = 51.2 bits (121), Expect = 3e-06 Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 6/129 (4%) Frame = +2 Query: 296 HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDPN 475 HRLD+ TSG+L++ + LA+QF+ H I + Y ++ G A ++ P++ + + Sbjct: 51 HRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGW-LMEEAVLDYPLAEELD 109 Query: 476 NRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGS------ALVEWRLETGRTHQIRAHAK 637 A G + A E+ G LVE +TGR HQ+R H Sbjct: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 Query: 638 YLGNPLLGD 664 +L +P++GD Sbjct: 170 HLRHPIIGD 178
>TRUC_PASMU (Q9CNF3) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 243 Score = 50.1 bits (118), Expect = 6e-06 Identities = 52/223 (23%), Positives = 88/223 (39%), Gaps = 9/223 (4%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 I+Y+D +L+ VNKPA M+VH + + + T Sbjct: 5 ILYQDPYLIAVNKPAGMLVHRSWLDRHET------------------------------- 33 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 QF + + ++ + + +HRLD+ TSG+L+ A L QF+ Sbjct: 34 ----------QFVMQTLRDQIGQHVYP---IHRLDRPTSGVLLFALSSEVANLLCLQFEN 80 Query: 383 HTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRY----KV 550 + + Y+++ G RI+ P+ + A + + A + Y KV Sbjct: 81 KQVQKSYLAIVRGY-LVGEGRIDYPLKVQLDKIADKFA---QDDKAPQEAVTDYLGLAKV 136 Query: 551 REVFCGGGSALVEWRL-----ETGRTHQIRAHAKYLGNPLLGD 664 +C + L TGR HQ+R H K+L +P+LGD Sbjct: 137 EMPYCVKKYPTTRYSLVRLIPHTGRKHQLRRHMKHLFHPILGD 179
>TRUC_SHIFL (P0AA42) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 260 Score = 50.1 bits (118), Expect = 6e-06 Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 6/129 (4%) Frame = +2 Query: 296 HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDPN 475 HRLD+ TSG+L++ + LA+QF+ H I + Y ++ G A ++ P+ + + Sbjct: 51 HRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGW-LMEEAVLDYPLVEELD 109 Query: 476 NRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGS------ALVEWRLETGRTHQIRAHAK 637 A G + A E+ G LVE +TGR HQ+R H Sbjct: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 Query: 638 YLGNPLLGD 664 +L +P++GD Sbjct: 170 HLRHPIIGD 178
>TRUC_ECOLI (P0AA41) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 260 Score = 50.1 bits (118), Expect = 6e-06 Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 6/129 (4%) Frame = +2 Query: 296 HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDPN 475 HRLD+ TSG+L++ + LA+QF+ H I + Y ++ G A ++ P+ + + Sbjct: 51 HRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGW-LMEEAVLDYPLVEELD 109 Query: 476 NRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGS------ALVEWRLETGRTHQIRAHAK 637 A G + A E+ G LVE +TGR HQ+R H Sbjct: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 Query: 638 YLGNPLLGD 664 +L +P++GD Sbjct: 170 HLRHPIIGD 178
>TRUC_ECO57 (Q8X6T6) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 260 Score = 50.1 bits (118), Expect = 6e-06 Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 6/129 (4%) Frame = +2 Query: 296 HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDPN 475 HRLD+ TSG+L++ + LA+QF+ H I + Y ++ G A ++ P+ + + Sbjct: 51 HRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGW-LMEEAVLDYPLVEELD 109 Query: 476 NRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGS------ALVEWRLETGRTHQIRAHAK 637 A G + A E+ G LVE +TGR HQ+R H Sbjct: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 Query: 638 YLGNPLLGD 664 +L +P++GD Sbjct: 170 HLRHPIIGD 178
>TRUC_SALTY (Q8ZMD5) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 260 Score = 49.7 bits (117), Expect = 8e-06 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 6/129 (4%) Frame = +2 Query: 296 HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDPN 475 HRLD+ TSG+L++ + +LA+QF+ H I + Y ++ G + A ++ P+ + + Sbjct: 51 HRLDRPTSGVLLMGLSSEAGRRLAQQFEQHHIRKRYHAIVRGW-LMDDAVLDYPLVEERD 109 Query: 476 NRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGS------ALVEWRLETGRTHQIRAHAK 637 A + A E+ G LVE +TGR HQ+R H Sbjct: 110 KIADKFAREDKAPQPAVTQYRGLATVEMAVPTGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 Query: 638 YLGNPLLGD 664 +L +P++GD Sbjct: 170 HLRHPIIGD 178
>TRUC_SALTI (Q8Z439) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 260 Score = 49.3 bits (116), Expect = 1e-05 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 6/129 (4%) Frame = +2 Query: 296 HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDPN 475 HRLD+ TSG+L++ + +LA+QF+ H I + Y ++ G + A ++ P+ + + Sbjct: 51 HRLDRPTSGVLLMGLSSEAGRRLAQQFEQHHIRKRYHAIVRGW-LIDDAVLDYPLVEERD 109 Query: 476 NRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGS------ALVEWRLETGRTHQIRAHAK 637 A + A E+ G LVE +TGR HQ+R H Sbjct: 110 KIADKFAREDKAPQPAVTQYRGLATVEMAVPTGRYPTTRYGLVELEPKTGRKHQLRRHLA 169 Query: 638 YLGNPLLGD 664 +L +P++GD Sbjct: 170 HLRHPIIGD 178
>TRUC_VIBVU (Q8DBG5) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 245 Score = 48.5 bits (114), Expect = 2e-05 Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 10/224 (4%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 IVY+DE+ + VNKPA M+VH + + + T Sbjct: 4 IVYQDEYFVAVNKPAGMLVHRSWLDKHET------------------------------- 32 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 QF + + ++ + + +HRLD+ TSG+LV A +Q+ F Sbjct: 33 ----------QFVMQTLRDQIGQHVFP---LHRLDRPTSGVLVFALSSEVASQVMPMFAG 79 Query: 383 HTINRVYISLTCG-VPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKV--- 550 +++ Y ++ G + + + D ++ S + A+ A + YK Sbjct: 80 QEMSKTYHAIVRGWIEEEGELDYALKVELD-----KIADKFASQEKEAQDAITLYKPLAK 134 Query: 551 ------REVFCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 F L+E + +TGR HQ+R H +L +P++GD Sbjct: 135 VEVPYSTSKFPTTRYGLMELKPKTGRKHQLRRHMAHLRHPIVGD 178
>TRUC_PECCC (Q47417) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 376 Score = 48.5 bits (114), Expect = 2e-05 Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 6/130 (4%) Frame = +2 Query: 293 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDP 472 VHRLD+ TSG+L++A L++QF+ H + + Y ++ G + I+ ++ + Sbjct: 164 VHRLDRPTSGVLLLALSSEVARALSQQFESHQMQKTYHAVVRGYVLDDGV-IDYALTEEL 222 Query: 473 NNRIRMVAAPGSGHRYA-KHAASRYKVREVFCGG-----GSALVEWRLETGRTHQIRAHA 634 + P + A H S + G +L+E + +TGR HQ+R H Sbjct: 223 DKIADKFTNPDKAPQPAVTHYRSLAQAEMPVAIGRYPTARYSLMELKPQTGRKHQLRRHM 282 Query: 635 KYLGNPLLGD 664 ++ +P++GD Sbjct: 283 SHIHHPIIGD 292 Score = 32.7 bits (73), Expect = 1.0 Identities = 12/20 (60%), Positives = 17/20 (85%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVH 82 I+Y+DEHL+ VNKP+ +VH Sbjct: 118 IIYQDEHLVAVNKPSGWLVH 137
>Y714_MYCCT (P45614) Hypothetical RNA pseudouridine synthase MCAP_0714 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) (ORF2) Length = 302 Score = 47.4 bits (111), Expect = 4e-05 Identities = 56/216 (25%), Positives = 88/216 (40%), Gaps = 1/216 (0%) Frame = +2 Query: 20 NIVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXX 199 +IVYED ++L+VNKP ++ +H +V + L K + NS Sbjct: 83 DIVYEDNNILIVNKPNNLEMHSIYNLCLDDMVKSYLVDKK--EYDIYLENS--------- 131 Query: 200 XXXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK 379 F I V HRLDK TSGL++ AK++ S L FK Sbjct: 132 ------------FVISHV--------------HRLDKLTSGLVIYAKNKISSIILTNAFK 165 Query: 380 L-HTINRVYISLTCGVPSPNSARIEVPISRDPNNRIRMVAAPGSGHRYAKHAASRYKVRE 556 IN+ Y +LT + N ++V + N+ + K+ + +K+ Sbjct: 166 TKDQINKYYYALTSYDWNLNDF-LQVNGYINYNSNTQKADFSLVEKNNYKYCQTEFKL-- 222 Query: 557 VFCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 L+ +L TG+ HQIR+ + NP+L D Sbjct: 223 ----VNKNLILVKLITGKKHQIRSVLSFYNNPILND 254
>TRUC_HAEIN (P44197) tRNA pseudouridine synthase C (EC 5.4.99.-) (tRNA-uridine| isomerase C) (tRNA pseudouridylate synthase C) Length = 239 Score = 46.2 bits (108), Expect = 9e-05 Identities = 52/234 (22%), Positives = 90/234 (38%), Gaps = 20/234 (8%) Frame = +2 Query: 23 IVYEDEHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLTRNSIXXXXXXXXX 202 I+Y+D L+ VNKPA M+VH + + + T Sbjct: 4 ILYQDGFLVAVNKPAGMLVHRSWLDPHET------------------------------- 32 Query: 203 XXXXXXXXXXQFTIGEVSSEVREAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKL 382 QF + + ++ + + +HRLD+ TSG+L+ A + EQF+ Sbjct: 33 ----------QFVMQTLRDQIGQHVFP---IHRLDRPTSGVLLFALSSEIANLMCEQFEQ 79 Query: 383 HTINRVYISLTCGVPSPNSARIEVPI--------------SRDPNNRI------RMVAAP 502 + + Y+++ G RI+ P+ ++P I ++V P Sbjct: 80 KYVQKSYLAVVRGY-LQGKERIDYPLKIQLDKIADKFSQEDKEPQEAITDYEGLKIVEMP 138 Query: 503 GSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGNPLLGD 664 RY +RY +LV+ TGR H +R H K++ +P+ GD Sbjct: 139 YPAGRY---QTARY-----------SLVKLIPHTGRKHXLRXHMKHVFHPIXGD 178
>Y347_HELPY (O25114) Hypothetical RNA pseudouridine synthase HP0347 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 298 Score = 38.5 bits (88), Expect = 0.018 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 4/127 (3%) Frame = +2 Query: 296 HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDPN 475 HRLD TSGL++ K S L F + + Y++L G+ S +I+ PI N Sbjct: 116 HRLDYETSGLVLAGKTLQSVKDLKALFMQKKVKKTYLALAHGLVE-KSMKIDKPILTPQN 174 Query: 476 NR----IRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYL 643 + IR +P K + + + +L++ TGRTHQIR H + Sbjct: 175 IQKDLHIRSKISP-----LGKQSITLVEPLSYNPFLDISLLKITPLTGRTHQIRLHLSSV 229 Query: 644 GNPLLGD 664 + ++G+ Sbjct: 230 DHRIVGE 236
>Y347_HELPJ (Q9ZMA1) Hypothetical RNA pseudouridine synthase jhp_0321 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 293 Score = 37.4 bits (85), Expect = 0.041 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 4/127 (3%) Frame = +2 Query: 296 HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPN---SARIEVPISR 466 HRLD TSGL++ K S L F + + Y++L G+ + + I P + Sbjct: 116 HRLDYETSGLVLAGKTLQSTKDLKALFMQKKVKKTYLALAHGLVDKSIIINKPILTPQNI 175 Query: 467 DPNNRIRMVAAP-GSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYL 643 + RIR +P G S ++ +L++ TGRTHQIR H + Sbjct: 176 QKDLRIRSQISPLGKPSITLVEPLSYNPFLDI------SLLKITPLTGRTHQIRLHLSSV 229 Query: 644 GNPLLGD 664 + ++G+ Sbjct: 230 DHRIVGE 236
>PUS5_CANAL (Q5A0Y2) Pseudouridylate synthase PUS5 (EC 5.4.99.-) (Pseudouridine| synthase 5) (Uracil hydrolyase PUS5) Length = 247 Score = 35.8 bits (81), Expect = 0.12 Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 14/140 (10%) Frame = +2 Query: 290 IVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLH---TINRVYISLTC--GVPSPNSARIEV 454 +V RLD+ +G LVVA+++ ++ + F + R Y+ L +P I+ Sbjct: 53 LVQRLDRFVTGGLVVARNKKWADKVRKSFFQEGTLRLTRRYVGLIALDQIPESTQGTIDF 112 Query: 455 PISR-----DPNNRIRMVAAPGSGHRYAKHAASRYKVR---EVFCGGGSALVEWRLETGR 610 PI N+ R + + Y ++R ++ VF G + LETGR Sbjct: 113 PIQALEKDYRGKNKSRELFTYSAVTHYKLIPSARRTIKGVFPVFQQGPILPIILELETGR 172 Query: 611 THQIRAH-AKYLGNPLLGDE 667 +QIR H + G PLL D+ Sbjct: 173 KNQIRDHIIQKFGVPLLNDD 192
>PUS5_DEBHA (Q6BNX8) Pseudouridylate synthase PUS5 (EC 5.4.99.-) (Pseudouridine| synthase 5) (Uracil hydrolyase PUS5) Length = 339 Score = 33.1 bits (74), Expect = 0.77 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 3/53 (5%) Frame = +2 Query: 290 IVHRLDKGTSGLLVVAKDEHSHA---QLAEQFKLHTINRVYISLTCGVPSPNS 439 +VHRLDK SG L++A+ ++++A + Q ++ R YI L VP PN+ Sbjct: 79 VVHRLDKYVSGGLIIARGKNANAFRKSFSNQNTNLSVKRKYIGL---VPIPNT 128
>PUS5_ASHGO (Q750S3) Pseudouridylate synthase PUS5 (EC 5.4.99.-) (Pseudouridine| synthase 5) (Uracil hydrolyase PUS5) Length = 260 Score = 32.0 bits (71), Expect = 1.7 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 1/126 (0%) Frame = +2 Query: 293 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDP 472 VHRLD+ +G ++V++++ + A + L NR + P + R ++R+ Sbjct: 64 VHRLDEPVTGGVLVSRNKRAAAMFSRSLALGG-NRGF---------PLTRRYVALLAREA 113 Query: 473 NNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAH-AKYLGN 649 P G + YK E + LV +L+TGR HQIR A+ G Sbjct: 114 KG------LPSEGRITMGDMITDYKRLE------NDLVLLQLQTGRKHQIRKQMAQVFGQ 161 Query: 650 PLLGDE 667 P++ D+ Sbjct: 162 PVVNDK 167
>YTZF_BACSU (O32068) Hypothetical RNA pseudouridine synthase ytzF (EC 5.4.99.-)| (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 157 Score = 32.0 bits (71), Expect = 1.7 Identities = 29/120 (24%), Positives = 52/120 (43%) Frame = +2 Query: 299 RLDKGTSGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDPNN 478 RLDK T G L++ D QLA + +S VP ++ ISR+ + Sbjct: 19 RLDKDTEGFLLLTND----GQLAHRL---------LSPKKHVPKTYEVHLKSQISREDIS 65 Query: 479 RIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAHAKYLGNPLL 658 + G++ K A + K + G+ ++ + G+ HQ++ AK +GN ++ Sbjct: 66 DLETGVYIEGGYK-TKPAKAEIKTND----SGNTVIYLTITEGKYHQVKQMAKAVGNEVV 120
>MTR_HAEIN (P44614) Tryptophan-specific transport protein (Tryptophan| permease) Length = 418 Score = 31.2 bits (69), Expect = 2.9 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +3 Query: 393 IGYTSVLLVVYLAQILPELKFPYLVILTTGYAWL 494 +G T LV +L +L L+FPY ++ GYA L Sbjct: 323 LGRTKTTLVTFLPPLLLSLQFPYGFVIAIGYAGL 356
>TOLB_RALSO (Q8Y1F5) Protein tolB precursor| Length = 432 Score = 30.8 bits (68), Expect = 3.8 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = +2 Query: 428 SPNSARIEVPISRDPNNRIRMVAAPGSGHR 517 SP+ R+ V +SRD N +I V A GSG R Sbjct: 250 SPDGRRVAVALSRDGNTQIYQVNADGSGLR 279
>CLC1A_HUMAN (Q8NC01) C-type lectin domain family 1 member A (C-type lectin-like| receptor 1) (CLEC-1) Length = 280 Score = 30.8 bits (68), Expect = 3.8 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +1 Query: 58 QTGSYGCSPSTRECKWHLSQCY 123 + G++ CSP T + KWH CY Sbjct: 128 KAGAHRCSPCTEQWKWHGDNCY 149
>LRTM4_MOUSE (Q80XG9) Leucine-rich repeat transmembrane neuronal protein 4| precursor Length = 590 Score = 30.8 bits (68), Expect = 3.8 Identities = 17/49 (34%), Positives = 24/49 (48%) Frame = -3 Query: 635 LHVLGSGECALSPISTLPVQIHHHRRPLLLYTY*QHALHICGLIQEQQP 489 + V GSG C + + +I HH +PL Y+Y Q + C Q QP Sbjct: 498 ISVNGSGPCTYTISGSRECEIPHHVKPLPYYSYDQPVIGYC---QAHQP 543
>SRBS1_HUMAN (Q9BX66) Sorbin and SH3 domain-containing protein 1 (Ponsin)| (c-Cbl-associated protein) (CAP) (SH3 domain protein 5) (SH3P12) Length = 1292 Score = 29.6 bits (65), Expect = 8.5 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = +2 Query: 317 SGLLVVAKDEHSHAQLAEQFKLHTINRVYISLTCGVPSPNSARIEVPISRDPNNRI 484 S L+ A H++ A ++H + +ISLT GVP S + P+ P I Sbjct: 960 SKLITPAPSSLPHSRRALSPEMHAVTSEWISLTVGVPGRRSLALTPPLPPLPEASI 1015
>PUS5_YEAST (Q06244) Pseudouridylate synthase PUS5 (EC 5.4.99.-) (Pseudouridine| synthase 5) (Uracil hydrolyase PUS5) Length = 254 Score = 29.6 bits (65), Expect = 8.5 Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 6/131 (4%) Frame = +2 Query: 293 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKL-----HTINRVYISLTCGVPSPNSARIEVP 457 VHRLD +G +++AK + + + + + + R Y+++ +S R P Sbjct: 67 VHRLDHCVTGGMLIAKTKDGSVKFSRFLQKGGNNGYKLQRKYVAIV-----ESSGRFNKP 121 Query: 458 ISRDPNNRIRMVAAPGSGHRYAKHAASRYKVREVFCGGGSALVEWRLETGRTHQIRAH-A 634 N + P + K +EV + +L TG+ HQIR H + Sbjct: 122 ------NNYEIKYGPKYNFLISHGGREITKFKEV----DENCIVLQLVTGKKHQIRNHVS 171 Query: 635 KYLGNPLLGDE 667 + L P+L D+ Sbjct: 172 QILNQPILNDK 182 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,847,860 Number of Sequences: 219361 Number of extensions: 2051947 Number of successful extensions: 5572 Number of sequences better than 10.0: 112 Number of HSP's better than 10.0 without gapping: 5198 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5465 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
