ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags18k21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK072887.1| Oryza sativa (japonica cultivar-group) cDNA clon... 714 0.0
2gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic ... 299 6e-78
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 299 6e-78
4dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic D... 299 6e-78
5dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic D... 299 6e-78
6ref|NM_106254.2| Arabidopsis thaliana RNA binding / pseudouridin... 78 4e-11
7ref|NM_202422.1| Arabidopsis thaliana RNA binding / pseudouridin... 78 4e-11
8emb|BX816325.1|CNS0ACDU Arabidopsis thaliana Full-length cDNA Co... 78 4e-11
9dbj|AK117781.1| Arabidopsis thaliana At1g76050 mRNA for putative... 78 4e-11
10gb|AC007396.6|AC007396 Genomic sequence for Arabidopsis thaliana... 48 0.037
11gb|CP000249.1| Frankia sp. CcI3, complete genome 46 0.15
12gb|AC150788.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.3
13gb|AC144741.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.3
14gb|AC147480.13| Mus musculus chromosome 14, clone RP23-429N24, c... 42 2.3
15gb|AC026478.5| Mus musculus strain C57BL6/J chromosome 5 clone R... 42 2.3
16gb|AC165092.3| Mus musculus BAC clone RP23-10M2 from chromosome ... 42 2.3
17emb|AL365434.13| Human DNA sequence from clone RP11-236B18 on ch... 42 2.3
18gb|AC026418.4| Homo sapiens chromosome 5 clone CTD-2100N14, comp... 42 2.3
19ref|NM_173450.1| Mus musculus RNA pseudouridylate synthase domai... 42 2.3
20dbj|AK043340.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 42 2.3
21dbj|AK035800.1| Mus musculus 16 days neonate cerebellum cDNA, RI... 42 2.3
22dbj|AK035752.1| Mus musculus 16 days neonate cerebellum cDNA, RI... 42 2.3
23dbj|AK044767.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 42 2.3
24dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
25ref|XM_230464.3| PREDICTED: Rattus norvegicus similar to RIKEN c... 42 2.3
26emb|AL772264.8| Mouse DNA sequence from clone RP23-15I21 on chro... 42 2.3
27ref|XM_635322.1| Dictyostelium discoideum hypothetical protein (... 40 9.1
28ref|NM_186145.1| Oryza sativa (japonica cultivar-group), mRNA 40 9.1
29gb|AC132584.5| Mus musculus BAC clone RP24-346B15 from chromosom... 40 9.1
30gb|AC165959.5| Mus musculus BAC clone RP23-390B24 from chromosom... 40 9.1
31gb|AC141108.3| Medicago truncatula clone mth2-22g6, complete seq... 40 9.1
32emb|AL353150.25| Human DNA sequence from clone RP11-82L18 on chr... 40 9.1
33ref|XM_794193.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 9.1
34emb|Z99112.2|BSUB0009 Bacillus subtilis complete genome (section... 40 9.1
35emb|CR543861.1| Acinetobacter sp. ADP1 complete genome 40 9.1
36emb|AJ400878.1|MMU400878 Mus musculus Ascl3 gene, Cegp1 gene, D7... 40 9.1
37emb|AJ293572.1|SPN293572 Streptococcus pneumoniae pce gene for t... 40 9.1
38emb|AJ272039.1|SPN272039 Streptococcus pneumoniae lytD gene for ... 40 9.1
39ref|NM_001025209.1| Strongylocentrotus purpuratus soluble adenyl... 40 9.1
40gb|AY926532.1| Strongylocentrotus purpuratus soluble adenylyl cy... 40 9.1
41gb|AF126483.2| Homo sapiens chromosome 8 clone GS1-148g17 map 8p... 40 9.1
42gb|AC106794.3| Homo sapiens chromosome 5 clone RP11-419C19, comp... 40 9.1
43gb|AC026402.3| Homo sapiens chromosome 4 clone CTB-51E13, comple... 40 9.1
44gb|AC019292.10| Homo sapiens, clone RP11-23J14, complete sequence 40 9.1
45gb|AF307278.1|AF307278 HIV-1 isolate 91ALI311640 from Spain, env... 40 9.1
46gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome 40 9.1
47gb|AE008458.1|AE008458 Streptococcus pneumoniae R6 section 74 of... 40 9.1
48gb|AC090483.3|AC090483 Genomic sequence for Oryza sativa, Nippon... 40 9.1
49gb|AC154572.2| Mus musculus BAC clone RP23-392G15 from chromosom... 40 9.1
50gb|AC154432.2| Mus musculus BAC clone RP24-182L14 from chromosom... 40 9.1
51dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
52dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
53gb|AC097378.2| Homo sapiens BAC clone RP11-123G5 from 4, complet... 40 9.1
54dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 9.1
55gb|AF278687.1|AF278687 Streptococcus pneumoniae choline binding ... 40 9.1
56gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 9.1
57gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome 40 9.1
58gb|AC109459.3| Homo sapiens chromosome 5 clone RP11-260E4, compl... 40 9.1
59dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome 40 9.1
60dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
61emb|AL669945.16| Mouse DNA sequence from clone RP23-260K2 on chr... 40 9.1
62dbj|AK070380.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.1
63dbj|AK066322.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.1
64gb|AC153821.6| Mus musculus 10 BAC RP23-193A14 (Roswell Park Can... 40 9.1
65gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.1
66gb|U48870.1|BSU48870 Bacillus subtilis signal peptidase II (lsp)... 40 9.1
67dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 9.1 
>dbj|AK072887.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023148F05, full
            insert sequence
          Length = 1998

 Score =  714 bits (360), Expect = 0.0
 Identities = 588/662 (88%), Gaps = 4/662 (0%)
 Strand = Plus / Plus

                                                                        
Query: 6    ggacatcccgctggaacattgtttacgaggatgagcaccttctcgttgtgaacaaaccgg 65
            ||||||||| ||||| ||||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 429  ggacatcccactgga-cattgtttatgaggatgaccatcttctcgttgtgaacaaaccgg 487

                                                                        
Query: 66   ctcatatggttgttcacccagcaccagggaatgcaaatggcaccttagtcaatgctatac 125
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 488  ctcatatggttgttcacccagcaccaggaaatgcaaatggcaccttagtcaatgctatac 547

                                                                        
Query: 126  ttcaccactgcaagatttcaacttttacctgtttaacacgcaactcaattgatgatgatg 185
            |||||||||||||||||||||| |||||||||||| |||| || ||||||||||||||  
Sbjct: 548  ttcaccactgcaagatttcaacatttacctgtttagcacgtaattcaattgatgatgaa- 606

                                                                        
Query: 186  agtgccctgaatcttcagatgatgatgtcgacgtatttgatgttgaccaatttactattg 245
              |||||||| ||||||||||||||| | || || |||||  | || |||||||||| ||
Sbjct: 607  --tgccctgattcttcagatgatgatattgatgtgtttgacatcgatcaatttactactg 664

                                                                        
Query: 246  gtgaagtaagttcagaggtccgcgaagctattgtacgccctggtattgtgcataggcttg 305
            | |||||||||||||| ||||| |||||| |||| || |||||||| |||||||||||||
Sbjct: 665  gcgaagtaagttcagaagtccgtgaagctcttgtgcgtcctggtatcgtgcataggcttg 724

                                                                        
Query: 306  ataaggggacaagtggacttcttgttgtagctaaggatgagcattcacatgctcaattag 365
            ||||||| ||||||||||| ||||||||||| |||||||||||||| ||||| |||||||
Sbjct: 725  ataagggtacaagtggactacttgttgtagccaaggatgagcattctcatgcacaattag 784

                                                                        
Query: 366  cagaacaattcaagctgcatacaataaatagggtatacatcagtcttacttgtggtgtac 425
            ||||||||||||||||||||||||||   || || |||||||||||||||||||||| ||
Sbjct: 785  cagaacaattcaagctgcatacaatacgcagagtgtacatcagtcttacttgtggtgcac 844

                                                                        
Query: 426  ctagcccaaattctgccagaattgaagttcccatatctcgtgatcctaacaaccggatac 485
            | |  || ||||||| ||| ||||||||||| ||| |||||||||||||||||||||| |
Sbjct: 845  cgaatccgaattctggcaggattgaagttcctatagctcgtgatcctaacaaccggatcc 904

                                                                        
Query: 486  gcatggttgctgctcctggatcaggccacagatatgcaaagcatgctgctagtaggtata 545
            | ||| ||||  |||||||||||||||| |||||||||   ||||| |||||||||||||
Sbjct: 905  gtatgattgccactcctggatcaggccatagatatgcacgacatgccgctagtaggtata 964

                                                                        
Query: 546  aagtaagagaggtcttctgtggtggtggatctgcactggtagagtggagattggagacag 605
            ||||||||||||||||   |||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 965  aagtaagagaggtctttgctggtggtggatcagcactagtagagtggagattggagacag 1024

                                                                        
Query: 606  ggcgcactcaccagatccgagcacatgcaaaatatctagggaaccccctgcttggtgatg 665
            | || ||||||||||| |||||||||||||| || |||||||  ||||| ||||| ||||
Sbjct: 1025 gacgaactcaccagattcgagcacatgcaaagtacctagggattccccttcttggggatg 1084

              
Query: 666  aa 667
            ||
Sbjct: 1085 aa 1086
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>gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic sequence, complete
             sequence
          Length = 143507

 Score =  299 bits (151), Expect = 6e-78
 Identities = 240/269 (89%), Gaps = 3/269 (1%)
 Strand = Plus / Minus

                                                                         
Query: 73    ggttgttcacccagcaccagggaatgcaaatggcaccttagtcaatgctatacttcacca 132
             ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 48111 ggttgttcacccagcaccaggaaatgcaaatggcaccttagtcaatgctatacttcacca 48052

                                                                         
Query: 133   ctgcaagatttcaacttttacctgtttaacacgcaactcaattgatgatgatgagtgccc 192
             ||||||||||||||| |||||||||||| |||| || ||||||   |||||||| |||||
Sbjct: 48051 ctgcaagatttcaacatttacctgtttagcacgtaattcaatt---gatgatgaatgccc 47995

                                                                         
Query: 193   tgaatcttcagatgatgatgtcgacgtatttgatgttgaccaatttactattggtgaagt 252
             ||| ||||||||||||||| | || || |||||  | || |||||||||| ||| |||||
Sbjct: 47994 tgattcttcagatgatgatattgatgtgtttgacatcgatcaatttactactggcgaagt 47935

                                                                         
Query: 253   aagttcagaggtccgcgaagctattgtacgccctggtattgtgcataggcttgataaggg 312
             ||||||||| ||||| |||||| |||| || |||||||| ||||||||||||||||||||
Sbjct: 47934 aagttcagaagtccgtgaagctcttgtgcgtcctggtatcgtgcataggcttgataaggg 47875

                                          
Query: 313   gacaagtggacttcttgttgtagctaagg 341
              ||||||||||| ||||||||||| ||||
Sbjct: 47874 tacaagtggactacttgttgtagccaagg 47846



 Score =  198 bits (100), Expect = 2e-47
 Identities = 178/204 (87%)
 Strand = Plus / Minus

                                                                         
Query: 339   aggatgagcattcacatgctcaattagcagaacaattcaagctgcatacaataaataggg 398
             ||||||||||||| ||||| |||||||||||||||||||||||||||||||||   || |
Sbjct: 47689 aggatgagcattctcatgcacaattagcagaacaattcaagctgcatacaatacgcagag 47630

                                                                         
Query: 399   tatacatcagtcttacttgtggtgtacctagcccaaattctgccagaattgaagttccca 458
             | |||||||||||||||||||||| ||| |  || ||||||| ||| ||||||||||| |
Sbjct: 47629 tgtacatcagtcttacttgtggtgcaccgaatccgaattctggcaggattgaagttccta 47570

                                                                         
Query: 459   tatctcgtgatcctaacaaccggatacgcatggttgctgctcctggatcaggccacagat 518
             || |||||||||||||||||||||| || ||| ||||  |||||||||||||||| ||||
Sbjct: 47569 tagctcgtgatcctaacaaccggatccgtatgattgccactcctggatcaggccatagat 47510

                                     
Query: 519   atgcaaagcatgctgctagtaggt 542
             |||||   ||||| ||||||||||
Sbjct: 47509 atgcacgacatgccgctagtaggt 47486



 Score =  105 bits (53), Expect = 2e-19
 Identities = 74/81 (91%)
 Strand = Plus / Minus

                                                                         
Query: 539   aggtataaagtaagagaggtcttctgtggtggtggatctgcactggtagagtggagattg 598
             |||||||||||||||||||||||   |||||||||||| ||||| |||||||||||||||
Sbjct: 46928 aggtataaagtaagagaggtctttgctggtggtggatcagcactagtagagtggagattg 46869

                                  
Query: 599   gagacagggcgcactcaccag 619
             |||||||| || |||||||||
Sbjct: 46868 gagacaggacgaactcaccag 46848



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 65/70 (92%), Gaps = 1/70 (1%)
 Strand = Plus / Minus

                                                                         
Query: 6     ggacatcccgctggaacattgtttacgaggatgagcaccttctcgttgtgaacaaaccgg 65
             ||||||||| ||||| ||||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 48861 ggacatcccactgga-cattgtttatgaggatgaccatcttctcgttgtgaacaaaccgg 48803

                       
Query: 66    ctcatatggt 75
             ||||||||||
Sbjct: 48802 ctcatatggt 48793



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                               
Query: 618   agatccgagcacatgcaaaatatctagggaaccccctgcttggtgatgaa 667
             |||| |||||||||||||| || |||||||  ||||| ||||| ||||||
Sbjct: 46568 agattcgagcacatgcaaagtacctagggattccccttcttggggatgaa 46519
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  299 bits (151), Expect = 6e-78
 Identities = 240/269 (89%), Gaps = 3/269 (1%)
 Strand = Plus / Minus

                                                                            
Query: 73       ggttgttcacccagcaccagggaatgcaaatggcaccttagtcaatgctatacttcacca 132
                ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 29967414 ggttgttcacccagcaccaggaaatgcaaatggcaccttagtcaatgctatacttcacca 29967355

                                                                            
Query: 133      ctgcaagatttcaacttttacctgtttaacacgcaactcaattgatgatgatgagtgccc 192
                ||||||||||||||| |||||||||||| |||| || |||||   ||||||||| |||||
Sbjct: 29967354 ctgcaagatttcaacatttacctgtttagcacgtaattcaat---tgatgatgaatgccc 29967298

                                                                            
Query: 193      tgaatcttcagatgatgatgtcgacgtatttgatgttgaccaatttactattggtgaagt 252
                ||| ||||||||||||||| | || || |||||  | || |||||||||| ||| |||||
Sbjct: 29967297 tgattcttcagatgatgatattgatgtgtttgacatcgatcaatttactactggcgaagt 29967238

                                                                            
Query: 253      aagttcagaggtccgcgaagctattgtacgccctggtattgtgcataggcttgataaggg 312
                ||||||||| ||||| |||||| |||| || |||||||| ||||||||||||||||||||
Sbjct: 29967237 aagttcagaagtccgtgaagctcttgtgcgtcctggtatcgtgcataggcttgataaggg 29967178

                                             
Query: 313      gacaagtggacttcttgttgtagctaagg 341
                 ||||||||||| ||||||||||| ||||
Sbjct: 29967177 tacaagtggactacttgttgtagccaagg 29967149



 Score =  198 bits (100), Expect = 2e-47
 Identities = 178/204 (87%)
 Strand = Plus / Minus

                                                                            
Query: 339      aggatgagcattcacatgctcaattagcagaacaattcaagctgcatacaataaataggg 398
                ||||||||||||| ||||| |||||||||||||||||||||||||||||||||   || |
Sbjct: 29966992 aggatgagcattctcatgcacaattagcagaacaattcaagctgcatacaatacgcagag 29966933

                                                                            
Query: 399      tatacatcagtcttacttgtggtgtacctagcccaaattctgccagaattgaagttccca 458
                | |||||||||||||||||||||| ||| |  || ||||||| ||| ||||||||||| |
Sbjct: 29966932 tgtacatcagtcttacttgtggtgcaccgaatccgaattctggcaggattgaagttccta 29966873

                                                                            
Query: 459      tatctcgtgatcctaacaaccggatacgcatggttgctgctcctggatcaggccacagat 518
                || |||||||||||||||||||||| || ||| ||||  |||||||||||||||| ||||
Sbjct: 29966872 tagctcgtgatcctaacaaccggatccgtatgattgccactcctggatcaggccatagat 29966813

                                        
Query: 519      atgcaaagcatgctgctagtaggt 542
                |||||   ||||| ||||||||||
Sbjct: 29966812 atgcacgacatgccgctagtaggt 29966789



 Score =  105 bits (53), Expect = 2e-19
 Identities = 74/81 (91%)
 Strand = Plus / Minus

                                                                            
Query: 539      aggtataaagtaagagaggtcttctgtggtggtggatctgcactggtagagtggagattg 598
                |||||||||||||||||||||||   |||||||||||| ||||| |||||||||||||||
Sbjct: 29966231 aggtataaagtaagagaggtctttgctggtggtggatcagcactagtagagtggagattg 29966172

                                     
Query: 599      gagacagggcgcactcaccag 619
                |||||||| || |||||||||
Sbjct: 29966171 gagacaggacgaactcaccag 29966151



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 65/70 (92%), Gaps = 1/70 (1%)
 Strand = Plus / Minus

                                                                            
Query: 6        ggacatcccgctggaacattgtttacgaggatgagcaccttctcgttgtgaacaaaccgg 65
                ||||||||| ||||| ||||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 29968164 ggacatcccactgga-cattgtttatgaggatgaccatcttctcgttgtgaacaaaccgg 29968106

                          
Query: 66       ctcatatggt 75
                ||||||||||
Sbjct: 29968105 ctcatatggt 29968096



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                                  
Query: 618      agatccgagcacatgcaaaatatctagggaaccccctgcttggtgatgaa 667
                |||| |||||||||||||| || |||||||  ||||| ||||| ||||||
Sbjct: 29965871 agattcgagcacatgcaaagtacctagggattccccttcttggggatgaa 29965822
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>dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0541C02
          Length = 150660

 Score =  299 bits (151), Expect = 6e-78
 Identities = 240/269 (89%), Gaps = 3/269 (1%)
 Strand = Plus / Minus

                                                                         
Query: 73    ggttgttcacccagcaccagggaatgcaaatggcaccttagtcaatgctatacttcacca 132
             ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 43562 ggttgttcacccagcaccaggaaatgcaaatggcaccttagtcaatgctatacttcacca 43503

                                                                         
Query: 133   ctgcaagatttcaacttttacctgtttaacacgcaactcaattgatgatgatgagtgccc 192
             ||||||||||||||| |||||||||||| |||| || |||||   ||||||||| |||||
Sbjct: 43502 ctgcaagatttcaacatttacctgtttagcacgtaattcaat---tgatgatgaatgccc 43446

                                                                         
Query: 193   tgaatcttcagatgatgatgtcgacgtatttgatgttgaccaatttactattggtgaagt 252
             ||| ||||||||||||||| | || || |||||  | || |||||||||| ||| |||||
Sbjct: 43445 tgattcttcagatgatgatattgatgtgtttgacatcgatcaatttactactggcgaagt 43386

                                                                         
Query: 253   aagttcagaggtccgcgaagctattgtacgccctggtattgtgcataggcttgataaggg 312
             ||||||||| ||||| |||||| |||| || |||||||| ||||||||||||||||||||
Sbjct: 43385 aagttcagaagtccgtgaagctcttgtgcgtcctggtatcgtgcataggcttgataaggg 43326

                                          
Query: 313   gacaagtggacttcttgttgtagctaagg 341
              ||||||||||| ||||||||||| ||||
Sbjct: 43325 tacaagtggactacttgttgtagccaagg 43297



 Score =  198 bits (100), Expect = 2e-47
 Identities = 178/204 (87%)
 Strand = Plus / Minus

                                                                         
Query: 339   aggatgagcattcacatgctcaattagcagaacaattcaagctgcatacaataaataggg 398
             ||||||||||||| ||||| |||||||||||||||||||||||||||||||||   || |
Sbjct: 43140 aggatgagcattctcatgcacaattagcagaacaattcaagctgcatacaatacgcagag 43081

                                                                         
Query: 399   tatacatcagtcttacttgtggtgtacctagcccaaattctgccagaattgaagttccca 458
             | |||||||||||||||||||||| ||| |  || ||||||| ||| ||||||||||| |
Sbjct: 43080 tgtacatcagtcttacttgtggtgcaccgaatccgaattctggcaggattgaagttccta 43021

                                                                         
Query: 459   tatctcgtgatcctaacaaccggatacgcatggttgctgctcctggatcaggccacagat 518
             || |||||||||||||||||||||| || ||| ||||  |||||||||||||||| ||||
Sbjct: 43020 tagctcgtgatcctaacaaccggatccgtatgattgccactcctggatcaggccatagat 42961

                                     
Query: 519   atgcaaagcatgctgctagtaggt 542
             |||||   ||||| ||||||||||
Sbjct: 42960 atgcacgacatgccgctagtaggt 42937



 Score =  105 bits (53), Expect = 2e-19
 Identities = 74/81 (91%)
 Strand = Plus / Minus

                                                                         
Query: 539   aggtataaagtaagagaggtcttctgtggtggtggatctgcactggtagagtggagattg 598
             |||||||||||||||||||||||   |||||||||||| ||||| |||||||||||||||
Sbjct: 42379 aggtataaagtaagagaggtctttgctggtggtggatcagcactagtagagtggagattg 42320

                                  
Query: 599   gagacagggcgcactcaccag 619
             |||||||| || |||||||||
Sbjct: 42319 gagacaggacgaactcaccag 42299



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 65/70 (92%), Gaps = 1/70 (1%)
 Strand = Plus / Minus

                                                                         
Query: 6     ggacatcccgctggaacattgtttacgaggatgagcaccttctcgttgtgaacaaaccgg 65
             ||||||||| ||||| ||||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 44312 ggacatcccactgga-cattgtttatgaggatgaccatcttctcgttgtgaacaaaccgg 44254

                       
Query: 66    ctcatatggt 75
             ||||||||||
Sbjct: 44253 ctcatatggt 44244



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                               
Query: 618   agatccgagcacatgcaaaatatctagggaaccccctgcttggtgatgaa 667
             |||| |||||||||||||| || |||||||  ||||| ||||| ||||||
Sbjct: 42019 agattcgagcacatgcaaagtacctagggattccccttcttggggatgaa 41970
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>dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0481E08
          Length = 171965

 Score =  299 bits (151), Expect = 6e-78
 Identities = 240/269 (89%), Gaps = 3/269 (1%)
 Strand = Plus / Minus

                                                                          
Query: 73     ggttgttcacccagcaccagggaatgcaaatggcaccttagtcaatgctatacttcacca 132
              ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 162927 ggttgttcacccagcaccaggaaatgcaaatggcaccttagtcaatgctatacttcacca 162868

                                                                          
Query: 133    ctgcaagatttcaacttttacctgtttaacacgcaactcaattgatgatgatgagtgccc 192
              ||||||||||||||| |||||||||||| |||| || ||||||   |||||||| |||||
Sbjct: 162867 ctgcaagatttcaacatttacctgtttagcacgtaattcaatt---gatgatgaatgccc 162811

                                                                          
Query: 193    tgaatcttcagatgatgatgtcgacgtatttgatgttgaccaatttactattggtgaagt 252
              ||| ||||||||||||||| | || || |||||  | || |||||||||| ||| |||||
Sbjct: 162810 tgattcttcagatgatgatattgatgtgtttgacatcgatcaatttactactggcgaagt 162751

                                                                          
Query: 253    aagttcagaggtccgcgaagctattgtacgccctggtattgtgcataggcttgataaggg 312
              ||||||||| ||||| |||||| |||| || |||||||| ||||||||||||||||||||
Sbjct: 162750 aagttcagaagtccgtgaagctcttgtgcgtcctggtatcgtgcataggcttgataaggg 162691

                                           
Query: 313    gacaagtggacttcttgttgtagctaagg 341
               ||||||||||| ||||||||||| ||||
Sbjct: 162690 tacaagtggactacttgttgtagccaagg 162662



 Score =  198 bits (100), Expect = 2e-47
 Identities = 178/204 (87%)
 Strand = Plus / Minus

                                                                          
Query: 339    aggatgagcattcacatgctcaattagcagaacaattcaagctgcatacaataaataggg 398
              ||||||||||||| ||||| |||||||||||||||||||||||||||||||||   || |
Sbjct: 162505 aggatgagcattctcatgcacaattagcagaacaattcaagctgcatacaatacgcagag 162446

                                                                          
Query: 399    tatacatcagtcttacttgtggtgtacctagcccaaattctgccagaattgaagttccca 458
              | |||||||||||||||||||||| ||| |  || ||||||| ||| ||||||||||| |
Sbjct: 162445 tgtacatcagtcttacttgtggtgcaccgaatccgaattctggcaggattgaagttccta 162386

                                                                          
Query: 459    tatctcgtgatcctaacaaccggatacgcatggttgctgctcctggatcaggccacagat 518
              || |||||||||||||||||||||| || ||| ||||  |||||||||||||||| ||||
Sbjct: 162385 tagctcgtgatcctaacaaccggatccgtatgattgccactcctggatcaggccatagat 162326

                                      
Query: 519    atgcaaagcatgctgctagtaggt 542
              |||||   ||||| ||||||||||
Sbjct: 162325 atgcacgacatgccgctagtaggt 162302



 Score =  105 bits (53), Expect = 2e-19
 Identities = 74/81 (91%)
 Strand = Plus / Minus

                                                                          
Query: 539    aggtataaagtaagagaggtcttctgtggtggtggatctgcactggtagagtggagattg 598
              |||||||||||||||||||||||   |||||||||||| ||||| |||||||||||||||
Sbjct: 161744 aggtataaagtaagagaggtctttgctggtggtggatcagcactagtagagtggagattg 161685

                                   
Query: 599    gagacagggcgcactcaccag 619
              |||||||| || |||||||||
Sbjct: 161684 gagacaggacgaactcaccag 161664



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 65/70 (92%), Gaps = 1/70 (1%)
 Strand = Plus / Minus

                                                                          
Query: 6      ggacatcccgctggaacattgtttacgaggatgagcaccttctcgttgtgaacaaaccgg 65
              ||||||||| ||||| ||||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 163677 ggacatcccactgga-cattgtttatgaggatgaccatcttctcgttgtgaacaaaccgg 163619

                        
Query: 66     ctcatatggt 75
              ||||||||||
Sbjct: 163618 ctcatatggt 163609



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                                
Query: 618    agatccgagcacatgcaaaatatctagggaaccccctgcttggtgatgaa 667
              |||| |||||||||||||| || |||||||  ||||| ||||| ||||||
Sbjct: 161384 agattcgagcacatgcaaagtacctagggattccccttcttggggatgaa 161335
to top
>ref|NM_106254.2| Arabidopsis thaliana RNA binding / pseudouridine synthase/
           pseudouridylate synthase AT1G76050 transcript variant
           AT1G76050.1 mRNA, complete cds
          Length = 2223

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 90/107 (84%)
 Strand = Plus / Plus

                                                                       
Query: 284 cctggtattgtgcataggcttgataaggggacaagtggacttcttgttgtagctaaggat 343
           ||||||||||| |||||| | ||||| || |||| |||| | || |||||||| ||||||
Sbjct: 679 cctggtattgttcataggttggataaaggcacaactggattgctcgttgtagccaaggat 738

                                                          
Query: 344 gagcattcacatgctcaattagcagaacaattcaagctgcatacaat 390
           || ||||| ||||| || ||||||||||| |||||||| || |||||
Sbjct: 739 gaacattctcatgcccatttagcagaacagttcaagctacacacaat 785
to top
>ref|NM_202422.1| Arabidopsis thaliana RNA binding / pseudouridine synthase/
           pseudouridylate synthase AT1G76050 transcript variant
           AT1G76050.2 mRNA, complete cds
          Length = 2239

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 90/107 (84%)
 Strand = Plus / Plus

                                                                       
Query: 284 cctggtattgtgcataggcttgataaggggacaagtggacttcttgttgtagctaaggat 343
           ||||||||||| |||||| | ||||| || |||| |||| | || |||||||| ||||||
Sbjct: 714 cctggtattgttcataggttggataaaggcacaactggattgctcgttgtagccaaggat 773

                                                          
Query: 344 gagcattcacatgctcaattagcagaacaattcaagctgcatacaat 390
           || ||||| ||||| || ||||||||||| |||||||| || |||||
Sbjct: 774 gaacattctcatgcccatttagcagaacagttcaagctacacacaat 820



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 91/114 (79%)
 Strand = Plus / Plus

                                                                        
Query: 527  catgctgctagtaggtataaagtaagagaggtcttctgtggtggtggatctgcactggta 586
            |||||||||||||||||||| ||||  ||    |||  ||| ||||| |||||| |||| 
Sbjct: 960  catgctgctagtaggtataaggtaatcgaaacattcgctggaggtggctctgcattggtt 1019

                                                                  
Query: 587  gagtggagattggagacagggcgcactcaccagatccgagcacatgcaaaatat 640
            ||||||||| |||| || || || ||||| ||||| || || ||||| ||||||
Sbjct: 1020 gagtggagactggaaaccggccgtactcatcagatacgtgctcatgctaaatat 1073
to top
>emb|BX816325.1|CNS0ACDU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH41ZA09 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1616

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 90/107 (84%)
 Strand = Plus / Plus

                                                                       
Query: 284 cctggtattgtgcataggcttgataaggggacaagtggacttcttgttgtagctaaggat 343
           ||||||||||| |||||| | ||||| || |||| |||| | || |||||||| ||||||
Sbjct: 713 cctggtattgttcataggttggataaaggcacaactggattgctcgttgtagccaaggat 772

                                                          
Query: 344 gagcattcacatgctcaattagcagaacaattcaagctgcatacaat 390
           || ||||| ||||| || ||||||||||| |||||||| || |||||
Sbjct: 773 gaacattctcatgcccatttagcagaacagttcaagctacacacaat 819



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 527 catgctgctagtaggtataaagtaa 551
           |||||||||||||||||||| ||||
Sbjct: 959 catgctgctagtaggtataaggtaa 983
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>dbj|AK117781.1| Arabidopsis thaliana At1g76050 mRNA for putative RNA
           pseudouridylate synthase, complete cds, clone:
           RAFL17-47-D22
          Length = 1546

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 90/107 (84%)
 Strand = Plus / Plus

                                                                       
Query: 284 cctggtattgtgcataggcttgataaggggacaagtggacttcttgttgtagctaaggat 343
           ||||||||||| |||||| | ||||| || |||| |||| | || |||||||| ||||||
Sbjct: 671 cctggtattgttcataggttggataaaggcacaactggattgctcgttgtagccaaggat 730

                                                          
Query: 344 gagcattcacatgctcaattagcagaacaattcaagctgcatacaat 390
           || ||||| ||||| || ||||||||||| |||||||| || |||||
Sbjct: 731 gaacattctcatgcccatttagcagaacagttcaagctacacacaat 777
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>gb|AC007396.6|AC007396 Genomic sequence for Arabidopsis thaliana BAC T4O12 from chromosome I,
             complete sequence
          Length = 95870

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                 
Query: 339   aggatgagcattcacatgctcaattagcagaacaattcaagctgcatacaat 390
             ||||||| ||||| ||||| || ||||||||||| |||||||| || |||||
Sbjct: 90777 aggatgaacattctcatgcccatttagcagaacagttcaagctacacacaat 90828
to top
>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                              
Query: 594     gattggagacagggcgcactcaccagatccg 624
               |||||||||| |||||||| |||||||||||
Sbjct: 1719808 gattggagaccgggcgcacccaccagatccg 1719838
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>gb|AC150788.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0073C10,
              complete sequence
          Length = 165350

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 165    gcaactcaattgatgatgatg 185
              |||||||||||||||||||||
Sbjct: 129915 gcaactcaattgatgatgatg 129935
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>gb|AC144741.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBa0086E02, complete sequence
          Length = 150474

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 165  gcaactcaattgatgatgatg 185
            |||||||||||||||||||||
Sbjct: 9893 gcaactcaattgatgatgatg 9913
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>gb|AC147480.13| Mus musculus chromosome 14, clone RP23-429N24, complete sequence
          Length = 210000

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 102    atggcaccttagtcaatgctatacttcac 130
              ||||||||||||||||||| | |||||||
Sbjct: 117782 atggcaccttagtcaatgccaaacttcac 117810
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>gb|AC026478.5| Mus musculus strain C57BL6/J chromosome 5 clone RP23-135F23, complete
              sequence
          Length = 188103

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 102    atggcaccttagtcaatgctatacttcac 130
              ||||||||||||||||||| | |||||||
Sbjct: 133582 atggcaccttagtcaatgccaaacttcac 133554
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>gb|AC165092.3| Mus musculus BAC clone RP23-10M2 from chromosome 14, complete sequence
          Length = 215949

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 102    atggcaccttagtcaatgctatacttcac 130
              ||||||||||||||||||| | |||||||
Sbjct: 131212 atggcaccttagtcaatgccaaacttcac 131240
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>emb|AL365434.13| Human DNA sequence from clone RP11-236B18 on chromosome 10 Contains three
              novel genes and a DEAD/H (Asp-Glu-Ala-Asp/His) box
              polypeptide 18 (Myc-regulated) (DDX18) pseudogene, complete
              sequence
          Length = 158357

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 582    tggtagagtggagattggaga 602
              |||||||||||||||||||||
Sbjct: 117293 tggtagagtggagattggaga 117313
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>gb|AC026418.4| Homo sapiens chromosome 5 clone CTD-2100N14, complete sequence
          Length = 153198

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 427    tagcccaaattctgccagaat 447
              |||||||||||||||||||||
Sbjct: 124179 tagcccaaattctgccagaat 124199
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>ref|NM_173450.1| Mus musculus RNA pseudouridylate synthase domain containing 2
            (Rpusd2), mRNA
          Length = 2702

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 602  acagggcgcactcaccagatccgag 626
            ||||| |||||||||||||||||||
Sbjct: 1170 acaggtcgcactcaccagatccgag 1194
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>dbj|AK043340.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:A730086P06 product:hypothetical
            Pseudouridine synthase, Rlu family containing protein,
            full insert sequence
          Length = 1862

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 602  acagggcgcactcaccagatccgag 626
            ||||| |||||||||||||||||||
Sbjct: 1137 acaggtcgcactcaccagatccgag 1161
to top
>dbj|AK035800.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:9630005H21 product:hypothetical
            Pseudouridine synthase, Rlu family containing protein,
            full insert sequence
          Length = 2634

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 602  acagggcgcactcaccagatccgag 626
            ||||| |||||||||||||||||||
Sbjct: 1108 acaggtcgcactcaccagatccgag 1132
to top
>dbj|AK035752.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:9630001E10 product:hypothetical
            Pseudouridine synthase, Rlu family containing protein,
            full insert sequence
          Length = 2272

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 602  acagggcgcactcaccagatccgag 626
            ||||| |||||||||||||||||||
Sbjct: 1108 acaggtcgcactcaccagatccgag 1132
to top
>dbj|AK044767.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
            clone:A930041C02 product:hypothetical Pseudouridine
            synthase containing protein, full insert sequence
          Length = 2702

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 602  acagggcgcactcaccagatccgag 626
            ||||| |||||||||||||||||||
Sbjct: 1170 acaggtcgcactcaccagatccgag 1194
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 165     gcaactcaattgatgatgatg 185
               |||||||||||||||||||||
Sbjct: 3932028 gcaactcaattgatgatgatg 3932048
to top
>ref|XM_230464.3| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4921503C21;
            CG6187-like (predicted) (LOC311326), mRNA
          Length = 1781

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 602  acagggcgcactcaccagatccgag 626
            ||||| |||||||||||||||||||
Sbjct: 1180 acaggtcgcactcaccagatccgag 1204
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>emb|AL772264.8| Mouse DNA sequence from clone RP23-15I21 on chromosome 2, complete
              sequence
          Length = 189540

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 602    acagggcgcactcaccagatccgag 626
              ||||| |||||||||||||||||||
Sbjct: 173959 acaggtcgcactcaccagatccgag 173935
to top
>ref|XM_635322.1| Dictyostelium discoideum hypothetical protein (DDB0218348), partial
           mRNA
          Length = 861

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 193 tgaatcttcagatgatgatg 212
           ||||||||||||||||||||
Sbjct: 381 tgaatcttcagatgatgatg 362
to top
>ref|NM_186145.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 357

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 488 atggttgctgctcctggatcaggc 511
           |||||||||||| |||||||||||
Sbjct: 269 atggttgctgctgctggatcaggc 246
to top
>gb|AC132584.5| Mus musculus BAC clone RP24-346B15 from chromosome 7, complete sequence
          Length = 227856

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 434   aattctgccagaattgaagt 453
             ||||||||||||||||||||
Sbjct: 97016 aattctgccagaattgaagt 97035
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>gb|AC165959.5| Mus musculus BAC clone RP23-390B24 from chromosome 7, complete sequence
          Length = 217760

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 434   aattctgccagaattgaagt 453
             ||||||||||||||||||||
Sbjct: 45275 aattctgccagaattgaagt 45294
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>gb|AC141108.3| Medicago truncatula clone mth2-22g6, complete sequence
          Length = 119745

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   tgaatcttcagatgatgatg 212
             ||||||||||||||||||||
Sbjct: 29892 tgaatcttcagatgatgatg 29911
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>emb|AL353150.25| Human DNA sequence from clone RP11-82L18 on chromosome 9 Contains the
             3' end of a novel gene (SHC3) and a novel gene, complete
             sequence
          Length = 113051

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 593   agattggagacagggcgcac 612
             ||||||||||||||||||||
Sbjct: 36101 agattggagacagggcgcac 36082
to top
>ref|XM_794193.1| PREDICTED: Strongylocentrotus purpuratus similar to CG4329-PA,
            isoform A (LOC594764), partial mRNA
          Length = 2643

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 498  ctcctggatcaggccacaga 517
            ||||||||||||||||||||
Sbjct: 2458 ctcctggatcaggccacaga 2477
to top
>emb|Z99112.2|BSUB0009 Bacillus subtilis complete genome (section 9 of 21): from 1602883 to
             1807145
          Length = 204263

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    atggttgttcacccagcacc 90
             ||||||||||||||||||||
Sbjct: 13924 atggttgttcacccagcacc 13943
to top
>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome
          Length = 3598621

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 140     atttcaacttttacctgttt 159
               ||||||||||||||||||||
Sbjct: 2646144 atttcaacttttacctgttt 2646163
to top
>emb|AJ400878.1|MMU400878 Mus musculus Ascl3 gene, Cegp1 gene, D7H11orf14 gene, D7H11orf15 gene,
              D7H11orf16 gene and C11orf17 gene
          Length = 234169

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 434    aattctgccagaattgaagt 453
              ||||||||||||||||||||
Sbjct: 164362 aattctgccagaattgaagt 164343
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>emb|AJ293572.1|SPN293572 Streptococcus pneumoniae pce gene for teichoic acid
           phosphorylcholine esterase
          Length = 2355

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 597 tggagacagggcgcactcaccagatccg 624
           ||||||||||||||||||| || |||||
Sbjct: 21  tggagacagggcgcactcatcaaatccg 48
to top
>emb|AJ272039.1|SPN272039 Streptococcus pneumoniae lytD gene for teichoic acid
           phosphorylcholine esterase
          Length = 2486

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 597 tggagacagggcgcactcaccagatccg 624
           ||||||||||||||||||| || |||||
Sbjct: 69  tggagacagggcgcactcatcaaatccg 96
to top
>ref|NM_001025209.1| Strongylocentrotus purpuratus soluble adenylyl cyclase (LOC574069),
            mRNA
          Length = 5938

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 193  tgaatcttcagatgatgatg 212
            ||||||||||||||||||||
Sbjct: 3942 tgaatcttcagatgatgatg 3961
to top
>gb|AY926532.1| Strongylocentrotus purpuratus soluble adenylyl cyclase mRNA, complete
            cds
          Length = 5938

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 193  tgaatcttcagatgatgatg 212
            ||||||||||||||||||||
Sbjct: 3942 tgaatcttcagatgatgatg 3961
to top
>gb|AF126483.2| Homo sapiens chromosome 8 clone GS1-148g17 map 8p22-p21, complete
             sequence
          Length = 73160

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   aagatttcaacttttacctg 156
             ||||||||||||||||||||
Sbjct: 25221 aagatttcaacttttacctg 25240
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>gb|AC106794.3| Homo sapiens chromosome 5 clone RP11-419C19, complete sequence
          Length = 200581

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   ataggcttgataaggggaca 316
             ||||||||||||||||||||
Sbjct: 58247 ataggcttgataaggggaca 58228
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>gb|AC026402.3| Homo sapiens chromosome 4 clone CTB-51E13, complete sequence
          Length = 176959

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 507   caggccacagatatgcaaag 526
             ||||||||||||||||||||
Sbjct: 63224 caggccacagatatgcaaag 63205
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>gb|AC019292.10| Homo sapiens, clone RP11-23J14, complete sequence
          Length = 187375

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    aagatttcaacttttacctg 156
              ||||||||||||||||||||
Sbjct: 114334 aagatttcaacttttacctg 114315
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>gb|AF307278.1|AF307278 HIV-1 isolate 91ALI311640 from Spain, envelope glycoprotein, V3
           region (env) gene, partial cds
          Length = 264

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 360 aattagcagaacaattcaag 379
           ||||||||||||||||||||
Sbjct: 233 aattagcagaacaattcaag 252
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>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 219     tatttgatgttgaccaattt 238
               ||||||||||||||||||||
Sbjct: 3391479 tatttgatgttgaccaattt 3391498



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 219     tatttgatgttgaccaattt 238
               ||||||||||||||||||||
Sbjct: 3049892 tatttgatgttgaccaattt 3049911



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 219     tatttgatgttgaccaattt 238
               ||||||||||||||||||||
Sbjct: 2985146 tatttgatgttgaccaattt 2985165
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>gb|AE008458.1|AE008458 Streptococcus pneumoniae R6 section 74 of 184 of the complete genome
          Length = 12017

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 597  tggagacagggcgcactcaccagatccg 624
            ||||||||||||||||||| || |||||
Sbjct: 9839 tggagacagggcgcactcatcaaatccg 9866
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>gb|AC090483.3|AC090483 Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0050M22, from chromosome 10, complete sequence
          Length = 145417

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 497    gctcctggatcaggccacag 516
              ||||||||||||||||||||
Sbjct: 140901 gctcctggatcaggccacag 140920
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>gb|AC154572.2| Mus musculus BAC clone RP23-392G15 from chromosome 13, complete sequence
          Length = 185090

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 512    cacagatatgcaaagcatgc 531
              ||||||||||||||||||||
Sbjct: 103362 cacagatatgcaaagcatgc 103343
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>gb|AC154432.2| Mus musculus BAC clone RP24-182L14 from chromosome 13, complete
             sequence
          Length = 161618

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 512   cacagatatgcaaagcatgc 531
             ||||||||||||||||||||
Sbjct: 38161 cacagatatgcaaagcatgc 38142
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 497     gctcctggatcaggccacag 516
               ||||||||||||||||||||
Sbjct: 9507417 gctcctggatcaggccacag 9507436
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 488    atggttgctgctcctggatcaggc 511
              |||||||||||| |||||||||||
Sbjct: 414072 atggttgctgctgctggatcaggc 414049
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>gb|AC097378.2| Homo sapiens BAC clone RP11-123G5 from 4, complete sequence
          Length = 157417

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 140   atttcaacttttacctgtttaaca 163
             |||||||||||||| |||||||||
Sbjct: 34963 atttcaacttttacgtgtttaaca 34940
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 597     tggagacagggcgcactcaccagatccg 624
               ||||||| |||||||| |||||||||||
Sbjct: 7377777 tggagaccgggcgcacccaccagatccg 7377804
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>gb|AF278687.1|AF278687 Streptococcus pneumoniae choline binding protein E (cbpE) gene,
           complete cds
          Length = 2460

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 597 tggagacagggcgcactcaccagatccg 624
           ||||||||||||||||||| || |||||
Sbjct: 124 tggagacagggcgcactcatcaaatccg 151
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 597     tggagacagggcgcactcaccagatccg 624
               ||||||| |||||||| |||||||||||
Sbjct: 3887248 tggagaccgggcgcacccaccagatccg 3887221
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>gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome
          Length = 2160842

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 597    tggagacagggcgcactcaccagatccg 624
              ||||||||||||||||||| || |||||
Sbjct: 881962 tggagacagggcgcactcatcaaatccg 881989
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>gb|AC109459.3| Homo sapiens chromosome 5 clone RP11-260E4, complete sequence
          Length = 137309

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 297    ataggcttgataaggggaca 316
              ||||||||||||||||||||
Sbjct: 120718 ataggcttgataaggggaca 120699
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>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome
          Length = 1358633

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 290    attgtgcataggcttgataa 309
              ||||||||||||||||||||
Sbjct: 157341 attgtgcataggcttgataa 157322
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>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0585H11
          Length = 149371

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 488   atggttgctgctcctggatcaggc 511
             |||||||||||| |||||||||||
Sbjct: 16236 atggttgctgctgctggatcaggc 16213
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>emb|AL669945.16| Mouse DNA sequence from clone RP23-260K2 on chromosome X, complete
              sequence
          Length = 210523

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 97     tgcaaatggcaccttagtca 116
              ||||||||||||||||||||
Sbjct: 103342 tgcaaatggcaccttagtca 103361
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>dbj|AK070380.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052O04, full
           insert sequence
          Length = 815

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 497 gctcctggatcaggccacag 516
           ||||||||||||||||||||
Sbjct: 169 gctcctggatcaggccacag 188
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>dbj|AK066322.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013062A07, full
           insert sequence
          Length = 744

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 497 gctcctggatcaggccacag 516
           ||||||||||||||||||||
Sbjct: 136 gctcctggatcaggccacag 155
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>gb|AC153821.6| Mus musculus 10 BAC RP23-193A14 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 204618

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 311    gggacaagtggacttcttgt 330
              ||||||||||||||||||||
Sbjct: 142989 gggacaagtggacttcttgt 143008
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 497     gctcctggatcaggccacag 516
               ||||||||||||||||||||
Sbjct: 9513456 gctcctggatcaggccacag 9513475
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>gb|U48870.1|BSU48870 Bacillus subtilis signal peptidase II (lsp) gene, complete cds,
            isoleucyl-tRNA synthetase (ileS) and pyrR genes, partial
            cds
          Length = 3271

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   atggttgttcacccagcacc 90
            ||||||||||||||||||||
Sbjct: 1949 atggttgttcacccagcacc 1968
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 597     tggagacagggcgcactcaccagatccg 624
               ||||||| |||||||| |||||||||||
Sbjct: 1381791 tggagacggggcgcacccaccagatccg 1381818


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,589,159
Number of Sequences: 3902068
Number of extensions: 5589159
Number of successful extensions: 100970
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100504
Number of HSP's gapped (non-prelim): 461
length of query: 667
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 644
effective length of database: 17,143,297,704
effective search space: 11040283721376
effective search space used: 11040283721376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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