ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags18k01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_477920.1| Oryza sativa (japonica cultivar-group), mRNA 178 1e-41
2gb|AY109922.1| Zea mays CL803_1 mRNA sequence 133 7e-28
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
4dbj|AP005737.3| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
5gb|AC145966.2| Pan troglodytes BAC clone RP43-17M9 from 7, compl... 46 0.13
6gb|AC073341.10| Homo sapiens BAC clone RP11-549I23 from 7, compl... 46 0.13
7gb|AC147905.2| Xenopus tropicalis clone CH216-68C1, complete seq... 42 2.0
8emb|AL450340.13| Human DNA sequence from clone RP11-437I16 on ch... 42 2.0
9gb|AC147839.2| Xenopus tropicalis clone CH216-9N23, complete seq... 42 2.0
10gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 40 7.8
11gb|AF149821.1| Caenorhabditis elegans nonsense-mediated mRNA dec... 40 7.8
12gb|AC119382.7| Rattus norvegicus 4 BAC CH230-125G2 (Children's H... 40 7.8
13gb|AE009143.1| Agrobacterium tumefaciens str. C58 circular chrom... 40 7.8
14gb|AC134576.3| Mus musculus BAC clone RP24-68G10 from chromosome... 40 7.8
15gb|AC154442.3| Mus musculus BAC clone RP24-178L2 from chromosome... 40 7.8
16gb|AC124512.3| Mus musculus BAC clone RP23-444C17 from chromosom... 40 7.8
17gb|AC145856.2| Pan troglodytes BAC clone RP43-5P12 from 7, compl... 40 7.8
18gb|AC004870.2| Homo sapiens PAC clone RP4-739M23 from 7, complet... 40 7.8
19gb|AC004874.1| Homo sapiens PAC clone RP4-744D13 from 7, complet... 40 7.8
20emb|AL390071.9| Human DNA sequence from clone RP11-98D3 on chrom... 40 7.8
21gb|AC151267.3| Mus musculus BAC clone RP24-296E22 from chromosom... 40 7.8
22gb|BT009452.1| Triticum aestivum clone wlmk8.pk0022.f7:fis, full... 40 7.8
23gb|AC162804.2| Mus musculus BAC clone RP23-192H11 from chromosom... 40 7.8
24emb|AL034557.8|PFMAL4P1 Plasmodium falciparum MAL4P1 40 7.8
25gb|AC099673.2| Homo sapiens chromosome 1 clone RP11-109H10, comp... 40 7.8
26emb|BX571714.7| Zebrafish DNA sequence from clone DKEY-16L2 in l... 40 7.8
27gb|AC105941.2| Homo sapiens chromosome 1 clone RP11-382E9, compl... 40 7.8
28gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 40 7.8
29gb|AC097716.5| Homo sapiens BAC clone RP11-619J20 from 4, comple... 40 7.8
30gb|AC021810.7|AC021810 Homo sapiens chromosome 18, clone RP11-82... 40 7.8
31ref|NM_001025883.1| Caenorhabditis elegans Suppressor with Morph... 40 7.8
32ref|NM_001025882.1| Caenorhabditis elegans Suppressor with Morph... 40 7.8
33dbj|AK089873.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 7.8
34gb|AC009203.5|AC009203 Drosophila melanogaster, chromosome 2L, r... 40 7.8
35gb|AC012071.9| Homo sapiens BAC clone RP11-328L5 from 2, complet... 40 7.8
36dbj|BS000119.1| Pan troglodytes chromosome 22 clone:RP43-001G01,... 40 7.8
37dbj|AB063285.1| Homo sapiens HLCS gene for holocarboxylase synth... 40 7.8
38gb|U97189.1| Caenorhabditis elegans cosmid C48B6, complete sequence 40 7.8
39gb|AE003660.2| Drosophila melanogaster chromosome 2L, section 69... 40 7.8
40emb|CR759994.2| Xenopus tropicalis finished cDNA, clone TNeu083f12 40 7.8
41dbj|AP000711.5| Homo sapiens genomic DNA, chromosome 11 clone:CM... 40 7.8
42dbj|AP001727.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 7.8
43emb|BX005142.4| Zebrafish DNA sequence from clone CH211-129K16 i... 40 7.8
44emb|CT033749.8| Mouse DNA sequence from clone RP23-14N10 on chro... 40 7.8
45emb|AL831740.9| Mouse DNA sequence from clone RP23-395P16 on chr... 40 7.8
46ref|NM_001037250.1| Xenopus tropicalis hypothetical protein LOC3... 40 7.8
47dbj|AP000703.1| Homo sapiens genomic DNA, chromosome 21q22.2, co... 40 7.8 
>ref|XM_477920.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1506

 Score =  178 bits (90), Expect = 1e-41
 Identities = 228/274 (83%)
 Strand = Plus / Plus

                                                                        
Query: 294  tttgctttgatgggtatttgacatccattataacgaagtacagcgacaggattttgttga 353
            ||||||||||||  ||||| |||||| || | | |||||||   || | ||||||| | |
Sbjct: 800  tttgctttgatgactattttacatccgttgtgatgaagtacgctgagaagattttgctta 859

                                                                        
Query: 354  cagagtcagatatgaaagcacattcctcaagacgaaaagaaaagcaaaagctgtctagtg 413
            |||| |||||||  ||| ||| ||| ||||||||||||||||| ||||| ||  | |   
Sbjct: 860  cagaatcagatacaaaaccacgttcatcaagacgaaaagaaaaacaaaaacttgcaacca 919

                                                                        
Query: 414  atgccaggtgcaaagagaagtttgattacggtactgaatggacgggtccccctccatggg 473
            ||||||  |||||||||||||||||   | |||||||||||  |||||  ||||||||||
Sbjct: 920  atgccaaatgcaaagagaagtttgagggcagtactgaatggcagggtcttcctccatggg 979

                                                                        
Query: 474  atccttccgttggtggagatggatacccaaagtttctgtgtgatgtgatgattgagggtc 533
            ||||||| | |||||||||||| | |||||| ||| ||||||||||||||||||||||| 
Sbjct: 980  atccttctgctggtggagatggctgcccaaaatttttgtgtgatgtgatgattgagggtt 1039

                                              
Query: 534  tagctaagcacttgagatgtgttggattagatgc 567
            |||||||||||||||||||||||||| |||||||
Sbjct: 1040 tagctaagcacttgagatgtgttggaatagatgc 1073



 Score =  133 bits (67), Expect = 7e-28
 Identities = 160/191 (83%)
 Strand = Plus / Plus

                                                                       
Query: 5   catgacacgcaaacgagacttccaaaggagacgaagagtctggcttcaatatgcgaggaa 64
           ||||||| ||||| ||| ||||||| |||||| |||||| ||||  |||| || ||||||
Sbjct: 508 catgacatgcaaaagaggcttccaagggagaccaagagtttggcaacaatttgtgaggaa 567

                                                                       
Query: 65  ctgctgaatgtctctttatccaaggaactccaatgtagcgattggtcatgccgacccttg 124
           |||||   ||| | |||||| |||||||| |||||||| |||||||||| ||| ||||| 
Sbjct: 568 ctgcttggtgtttatttatcaaaggaacttcaatgtagtgattggtcataccgtccctta 627

                                                                       
Query: 125 agcgaagggcaaatacagtatgctgcatcagatgcctactacttgctatatatatttgat 184
           || ||||| |||||||| ||||||||||| ||||||||||| || ||  | |||||||||
Sbjct: 628 agtgaaggtcaaatacaatatgctgcatctgatgcctactatttactcgacatatttgat 687

                      
Query: 185 ctgttccatca 195
           || ||||||||
Sbjct: 688 ctattccatca 698
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>gb|AY109922.1| Zea mays CL803_1 mRNA sequence
          Length = 1598

 Score =  133 bits (67), Expect = 7e-28
 Identities = 124/143 (86%)
 Strand = Plus / Plus

                                                                       
Query: 83  tccaaggaactccaatgtagcgattggtcatgccgacccttgagcgaagggcaaatacag 142
           |||||||||||||| ||||| |||||||||||||| ||||| || |||||||||||||| 
Sbjct: 493 tccaaggaactccagtgtagtgattggtcatgccgccccttaagtgaagggcaaatacaa 552

                                                                       
Query: 143 tatgctgcatcagatgcctactacttgctatatatatttgatctgttccatcagaaggtc 202
           |||||||| || |||||||||||||||||| | ||||||||| |||||||  ||| | ||
Sbjct: 553 tatgctgcgtcggatgcctactacttgctagacatatttgatttgttccaaaagaggatc 612

                                  
Query: 203 agcattgaagaaaaatgttcatc 225
           |  || |||| ||||||||||||
Sbjct: 613 acaatggaaggaaaatgttcatc 635



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 466 tccatgggatccttccgttggtgg 489
           |||||||||||||||| |||||||
Sbjct: 879 tccatgggatccttccattggtgg 902
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  107 bits (54), Expect = 4e-20
 Identities = 186/230 (80%)
 Strand = Plus / Plus

                                                                            
Query: 294      tttgctttgatgggtatttgacatccattataacgaagtacagcgacaggattttgttga 353
                ||||||||||||  ||||| |||||| || | | |||||||   || | ||||||| | |
Sbjct: 15545136 tttgctttgatgactattttacatccgttgtgatgaagtacgctgagaagattttgctta 15545195

                                                                            
Query: 354      cagagtcagatatgaaagcacattcctcaagacgaaaagaaaagcaaaagctgtctagtg 413
                |||| |||||||  ||| ||| ||| ||||||||||||||||| ||||| ||  | |   
Sbjct: 15545196 cagaatcagatacaaaaccacgttcatcaagacgaaaagaaaaacaaaaacttgcaacca 15545255

                                                                            
Query: 414      atgccaggtgcaaagagaagtttgattacggtactgaatggacgggtccccctccatggg 473
                ||||||  |||||||||||||||||   | |||||||||||  |||||  ||||||||||
Sbjct: 15545256 atgccaaatgcaaagagaagtttgagggcagtactgaatggcagggtcttcctccatggg 15545315

                                                                  
Query: 474      atccttccgttggtggagatggatacccaaagtttctgtgtgatgtgatg 523
                ||||||| | |||||||||||| | |||||| ||| ||||||||||||||
Sbjct: 15545316 atccttctgctggtggagatggctgcccaaaatttttgtgtgatgtgatg 15545365



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 94/109 (86%)
 Strand = Plus / Plus

                                                                            
Query: 87       aggaactccaatgtagcgattggtcatgccgacccttgagcgaagggcaaatacagtatg 146
                ||||||| |||||||| |||||||||| ||| ||||| || ||||| |||||||| ||||
Sbjct: 15543764 aggaacttcaatgtagtgattggtcataccgtcccttaagtgaaggtcaaatacaatatg 15543823

                                                                 
Query: 147      ctgcatcagatgcctactacttgctatatatatttgatctgttccatca 195
                ||||||| ||||||||||| || ||  | ||||||||||| ||||||||
Sbjct: 15543824 ctgcatctgatgcctactatttactcgacatatttgatctattccatca 15543872



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                             
Query: 523      gattgagggtctagctaagcacttgagatgtgttggattagatgc 567
                |||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 15545537 gattgagggtttagctaagcacttgagatgtgttggaatagatgc 15545581



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                            
Query: 5        catgacacgcaaacgagacttccaaaggagacgaagagtctggcttcaatatgcgaggaa 64
                ||||||| ||||| ||| ||||||| |||||| |||||| ||||  |||| || ||||||
Sbjct: 15542944 catgacatgcaaaagaggcttccaagggagaccaagagtttggcaacaatttgtgaggaa 15543003

                     
Query: 65       ctgct 69
                |||||
Sbjct: 15543004 ctgct 15543008
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>dbj|AP005737.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0062P14
          Length = 168223

 Score =  107 bits (54), Expect = 4e-20
 Identities = 186/230 (80%)
 Strand = Plus / Plus

                                                                         
Query: 294   tttgctttgatgggtatttgacatccattataacgaagtacagcgacaggattttgttga 353
             ||||||||||||  ||||| |||||| || | | |||||||   || | ||||||| | |
Sbjct: 63619 tttgctttgatgactattttacatccgttgtgatgaagtacgctgagaagattttgctta 63678

                                                                         
Query: 354   cagagtcagatatgaaagcacattcctcaagacgaaaagaaaagcaaaagctgtctagtg 413
             |||| |||||||  ||| ||| ||| ||||||||||||||||| ||||| ||  | |   
Sbjct: 63679 cagaatcagatacaaaaccacgttcatcaagacgaaaagaaaaacaaaaacttgcaacca 63738

                                                                         
Query: 414   atgccaggtgcaaagagaagtttgattacggtactgaatggacgggtccccctccatggg 473
             ||||||  |||||||||||||||||   | |||||||||||  |||||  ||||||||||
Sbjct: 63739 atgccaaatgcaaagagaagtttgagggcagtactgaatggcagggtcttcctccatggg 63798

                                                               
Query: 474   atccttccgttggtggagatggatacccaaagtttctgtgtgatgtgatg 523
             ||||||| | |||||||||||| | |||||| ||| ||||||||||||||
Sbjct: 63799 atccttctgctggtggagatggctgcccaaaatttttgtgtgatgtgatg 63848



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 94/109 (86%)
 Strand = Plus / Plus

                                                                         
Query: 87    aggaactccaatgtagcgattggtcatgccgacccttgagcgaagggcaaatacagtatg 146
             ||||||| |||||||| |||||||||| ||| ||||| || ||||| |||||||| ||||
Sbjct: 62247 aggaacttcaatgtagtgattggtcataccgtcccttaagtgaaggtcaaatacaatatg 62306

                                                              
Query: 147   ctgcatcagatgcctactacttgctatatatatttgatctgttccatca 195
             ||||||| ||||||||||| || ||  | ||||||||||| ||||||||
Sbjct: 62307 ctgcatctgatgcctactatttactcgacatatttgatctattccatca 62355



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                          
Query: 523   gattgagggtctagctaagcacttgagatgtgttggattagatgc 567
             |||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 64020 gattgagggtttagctaagcacttgagatgtgttggaatagatgc 64064



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                         
Query: 5     catgacacgcaaacgagacttccaaaggagacgaagagtctggcttcaatatgcgaggaa 64
             ||||||| ||||| ||| ||||||| |||||| |||||| ||||  |||| || ||||||
Sbjct: 61427 catgacatgcaaaagaggcttccaagggagaccaagagtttggcaacaatttgtgaggaa 61486

                  
Query: 65    ctgct 69
             |||||
Sbjct: 61487 ctgct 61491
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>gb|AC145966.2| Pan troglodytes BAC clone RP43-17M9 from 7, complete sequence
          Length = 197140

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 266   agtgaatgttcatcatcaggaaa 288
             |||||||||||||||||||||||
Sbjct: 23556 agtgaatgttcatcatcaggaaa 23578
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>gb|AC073341.10| Homo sapiens BAC clone RP11-549I23 from 7, complete sequence
          Length = 185574

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 266   agtgaatgttcatcatcaggaaa 288
             |||||||||||||||||||||||
Sbjct: 57594 agtgaatgttcatcatcaggaaa 57572
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>gb|AC147905.2| Xenopus tropicalis clone CH216-68C1, complete sequence
          Length = 159448

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 387   gaaaagaaaagcaaaagctgt 407
             |||||||||||||||||||||
Sbjct: 54510 gaaaagaaaagcaaaagctgt 54490
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>emb|AL450340.13| Human DNA sequence from clone RP11-437I16 on chromosome 6, complete
             sequence
          Length = 63806

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 389   aaagaaaagcaaaagctgtct 409
             |||||||||||||||||||||
Sbjct: 59175 aaagaaaagcaaaagctgtct 59195
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>gb|AC147839.2| Xenopus tropicalis clone CH216-9N23, complete sequence
          Length = 184473

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 387    gaaaagaaaagcaaaagctgt 407
              |||||||||||||||||||||
Sbjct: 126788 gaaaagaaaagcaaaagctgt 126808
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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 384     gacgaaaagaaaagcaaaagctgt 407
               |||||||| |||||||||||||||
Sbjct: 2638452 gacgaaaacaaaagcaaaagctgt 2638475
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>gb|AF149821.1| Caenorhabditis elegans nonsense-mediated mRNA decay protein SMG-1
            (smg-1) mRNA, complete cds
          Length = 7595

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 384  gacgaaaagaaaagcaaaag 403
            ||||||||||||||||||||
Sbjct: 1389 gacgaaaagaaaagcaaaag 1370
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>gb|AC119382.7| Rattus norvegicus 4 BAC CH230-125G2 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 189442

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 258   aaagggcaagtgaatgttca 277
             ||||||||||||||||||||
Sbjct: 52969 aaagggcaagtgaatgttca 52950
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>gb|AE009143.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 169
           of 256 of the complete sequence
          Length = 10595

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 175 tatatttgatctgttccatc 194
           ||||||||||||||||||||
Sbjct: 141 tatatttgatctgttccatc 160
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>gb|AC134576.3| Mus musculus BAC clone RP24-68G10 from chromosome 18, complete sequence
          Length = 249301

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 270   aatgttcatcatcaggaaat 289
             ||||||||||||||||||||
Sbjct: 76242 aatgttcatcatcaggaaat 76261
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>gb|AC154442.3| Mus musculus BAC clone RP24-178L2 from chromosome 17, complete sequence
          Length = 177231

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    atatatatttgatctgttcc 191
              ||||||||||||||||||||
Sbjct: 154120 atatatatttgatctgttcc 154139
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>gb|AC124512.3| Mus musculus BAC clone RP23-444C17 from chromosome 18, complete sequence
          Length = 192528

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 388    aaaagaaaagcaaaagctgt 407
              ||||||||||||||||||||
Sbjct: 180572 aaaagaaaagcaaaagctgt 180553
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>gb|AC145856.2| Pan troglodytes BAC clone RP43-5P12 from 7, complete sequence
          Length = 185183

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 518    gtgatgattgagggtctagctaag 541
              |||||||||||||||||| |||||
Sbjct: 112586 gtgatgattgagggtctaactaag 112563
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>gb|AC004870.2| Homo sapiens PAC clone RP4-739M23 from 7, complete sequence
          Length = 144546

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 518    gtgatgattgagggtctagctaag 541
              |||||||||||||||||| |||||
Sbjct: 143326 gtgatgattgagggtctaactaag 143349
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>gb|AC004874.1| Homo sapiens PAC clone RP4-744D13 from 7, complete sequence
          Length = 95983

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 382   aagacgaaaagaaaagcaaa 401
             ||||||||||||||||||||
Sbjct: 61375 aagacgaaaagaaaagcaaa 61356
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>emb|AL390071.9| Human DNA sequence from clone RP11-98D3 on chromosome 13 Contains part of
              the NEAB gene for neurobeachin (BCL8B FLJ10197 KIAA1544),
              the MAB21L1 gene for mab-21-like 1 (C. elegans) (CAGR1) and
              three CpG islands, complete sequence
          Length = 170998

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 272    tgttcatcatcaggaaatgacatt 295
              |||||||||||||||||| |||||
Sbjct: 127693 tgttcatcatcaggaaattacatt 127670
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>gb|AC151267.3| Mus musculus BAC clone RP24-296E22 from chromosome 17, complete
             sequence
          Length = 169816

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 502   aaagtttctgtgtgatgtga 521
             ||||||||||||||||||||
Sbjct: 29565 aaagtttctgtgtgatgtga 29584
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>gb|BT009452.1| Triticum aestivum clone wlmk8.pk0022.f7:fis, full insert mRNA
           sequence
          Length = 1996

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 548 agatgtgttggattagatgc 567
           ||||||||||||||||||||
Sbjct: 45  agatgtgttggattagatgc 26
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>gb|AC162804.2| Mus musculus BAC clone RP23-192H11 from chromosome 18, complete
             sequence
          Length = 183966

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 388   aaaagaaaagcaaaagctgt 407
             ||||||||||||||||||||
Sbjct: 84824 aaaagaaaagcaaaagctgt 84805
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>emb|AL034557.8|PFMAL4P1 Plasmodium falciparum MAL4P1
          Length = 347582

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    ctatatatatttgatctgtt 189
              ||||||||||||||||||||
Sbjct: 128018 ctatatatatttgatctgtt 127999
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>gb|AC099673.2| Homo sapiens chromosome 1 clone RP11-109H10, complete sequence
          Length = 193749

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   tatatatatttgatctgttc 190
             ||||||||||||||||||||
Sbjct: 27606 tatatatatttgatctgttc 27587
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>emb|BX571714.7| Zebrafish DNA sequence from clone DKEY-16L2 in linkage group 3,
             complete sequence
          Length = 240105

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   atatatttgatctgttccat 193
             ||||||||||||||||||||
Sbjct: 13844 atatatttgatctgttccat 13863
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>gb|AC105941.2| Homo sapiens chromosome 1 clone RP11-382E9, complete sequence
          Length = 177743

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    tatatatatttgatctgttc 190
              ||||||||||||||||||||
Sbjct: 164893 tatatatatttgatctgttc 164874
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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 175     tatatttgatctgttccatc 194
               ||||||||||||||||||||
Sbjct: 1865136 tatatttgatctgttccatc 1865155
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>gb|AC097716.5| Homo sapiens BAC clone RP11-619J20 from 4, complete sequence
          Length = 127248

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 502   aaagtttctgtgtgatgtga 521
             ||||||||||||||||||||
Sbjct: 33608 aaagtttctgtgtgatgtga 33589
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>gb|AC021810.7|AC021810 Homo sapiens chromosome 18, clone RP11-82K14, complete sequence
          Length = 192100

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 280    atcaggaaatgacatttgct 299
              ||||||||||||||||||||
Sbjct: 134812 atcaggaaatgacatttgct 134793
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>ref|NM_001025883.1| Caenorhabditis elegans Suppressor with Morphological effect on
            Genitalia family member (smg-1) (smg-1) mRNA, complete
            cds
          Length = 6637

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 384  gacgaaaagaaaagcaaaag 403
            ||||||||||||||||||||
Sbjct: 1361 gacgaaaagaaaagcaaaag 1342
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>ref|NM_001025882.1| Caenorhabditis elegans Suppressor with Morphological effect on
            Genitalia family member (smg-1) (smg-1) mRNA, complete
            cds
          Length = 7595

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 384  gacgaaaagaaaagcaaaag 403
            ||||||||||||||||||||
Sbjct: 1389 gacgaaaagaaaagcaaaag 1370
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>dbj|AK089873.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830035K10 product:unclassifiable, full
            insert sequence
          Length = 2490

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 292  catttgctttgatgggtatt 311
            ||||||||||||||||||||
Sbjct: 1042 catttgctttgatgggtatt 1061
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>gb|AC009203.5|AC009203 Drosophila melanogaster, chromosome 2L, region 36E-37C, BAC clone
             BACR07J05, complete sequence
          Length = 172061

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 389   aaagaaaagcaaaagctgtc 408
             ||||||||||||||||||||
Sbjct: 48977 aaagaaaagcaaaagctgtc 48996
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>gb|AC012071.9| Homo sapiens BAC clone RP11-328L5 from 2, complete sequence
          Length = 195265

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 538    taagcacttgagatgtgttg 557
              ||||||||||||||||||||
Sbjct: 194976 taagcacttgagatgtgttg 194957
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>dbj|BS000119.1| Pan troglodytes chromosome 22 clone:RP43-001G01, map 22, complete
             sequences
          Length = 101525

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   agggcaagtgaatgttcatc 279
             ||||||||||||||||||||
Sbjct: 16686 agggcaagtgaatgttcatc 16705
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>dbj|AB063285.1| Homo sapiens HLCS gene for holocarboxylase synthetase, complete cds
          Length = 250000

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   agggcaagtgaatgttcatc 279
             ||||||||||||||||||||
Sbjct: 59552 agggcaagtgaatgttcatc 59533
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>gb|U97189.1| Caenorhabditis elegans cosmid C48B6, complete sequence
          Length = 42333

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 384   gacgaaaagaaaagcaaaag 403
             ||||||||||||||||||||
Sbjct: 24633 gacgaaaagaaaagcaaaag 24652
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>gb|AE003660.2| Drosophila melanogaster chromosome 2L, section 69 of 83 of the complete
             sequence
          Length = 232737

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 389   aaagaaaagcaaaagctgtc 408
             ||||||||||||||||||||
Sbjct: 74737 aaagaaaagcaaaagctgtc 74756
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>emb|CR759994.2| Xenopus tropicalis finished cDNA, clone TNeu083f12
          Length = 3462

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 389  aaagaaaagcaaaagctgtctagt 412
            ||||||||| ||||||||||||||
Sbjct: 1237 aaagaaaaggaaaagctgtctagt 1260
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>dbj|AP000711.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-51K10, complete
             sequence
          Length = 111591

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 459   gtccccctccatgggatcct 478
             ||||||||||||||||||||
Sbjct: 31867 gtccccctccatgggatcct 31886
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>dbj|AP001727.1| Homo sapiens genomic DNA, chromosome 21q, section 71/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 260    agggcaagtgaatgttcatc 279
              ||||||||||||||||||||
Sbjct: 154360 agggcaagtgaatgttcatc 154379
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>emb|BX005142.4| Zebrafish DNA sequence from clone CH211-129K16 in linkage group 3,
             complete sequence
          Length = 170200

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   atatatttgatctgttccat 193
             ||||||||||||||||||||
Sbjct: 98609 atatatttgatctgttccat 98628
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>emb|CT033749.8| Mouse DNA sequence from clone RP23-14N10 on chromosome 17, complete
             sequence
          Length = 212052

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   atatatatttgatctgttcc 191
             ||||||||||||||||||||
Sbjct: 95964 atatatatttgatctgttcc 95983
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>emb|AL831740.9| Mouse DNA sequence from clone RP23-395P16 on chromosome 4, complete
             sequence
          Length = 166965

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   catttgctttgatgggtatt 311
             ||||||||||||||||||||
Sbjct: 98255 catttgctttgatgggtatt 98236
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>ref|NM_001037250.1| Xenopus tropicalis hypothetical protein LOC394509 (LOC394509), mRNA
          Length = 3462

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 389  aaagaaaagcaaaagctgtctagt 412
            ||||||||| ||||||||||||||
Sbjct: 1237 aaagaaaaggaaaagctgtctagt 1260
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>dbj|AP000703.1| Homo sapiens genomic DNA, chromosome 21q22.2, cosmid clone:D37D12,
             CBR1-HLCS region
          Length = 41541

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   agggcaagtgaatgttcatc 279
             ||||||||||||||||||||
Sbjct: 28492 agggcaagtgaatgttcatc 28511


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,151,076
Number of Sequences: 3902068
Number of extensions: 6151076
Number of successful extensions: 120007
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119806
Number of HSP's gapped (non-prelim): 198
length of query: 571
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 548
effective length of database: 17,143,297,704
effective search space: 9394527141792
effective search space used: 9394527141792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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