ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags18i23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF132119.1|AF132119 Pinus taeda laccase (Lac1) mRNA, complete... 56 1e-04
2ref|XM_467807.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.12
3ref|NM_196671.1| Oryza sativa (japonica cultivar-group) putative... 46 0.12
4ref|NM_193864.1| Oryza sativa (japonica cultivar-group), predic... 46 0.12
5ref|NM_101674.3| Arabidopsis thaliana copper ion binding AT1G181... 44 0.46
6gb|AC034107.5|T10F20 Sequence of BAC T10F20 from Arabidopsis tha... 44 0.46
7gb|AC069551.4|AC069551 Genomic sequence for Arabidopsis thaliana... 44 0.46
8gb|U73105.1|LTU73105 Liriodendron tulipifera high-pI laccase (LA... 44 0.46
9ref|NM_190554.1| Oryza sativa (japonica cultivar-group), predic... 42 1.8
10ref|NM_192960.1| Oryza sativa (japonica cultivar-group), predic... 42 1.8
11gb|AC016814.14| Mus musculus chromosome 1, clone RP23-2M16, comp... 42 1.8
12emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 42 1.8
13ref|XM_389822.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 42 1.8
14emb|CR847808.6| Zebrafish DNA sequence from clone CH211-151I8 in... 42 1.8
15dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 42 1.8
16gb|AE011767.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 1.8
17dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
18gb|AC130277.6| Mus musculus chromosome 1, clone RP24-387G4, comp... 42 1.8
19dbj|AP004317.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
20dbj|AK068901.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.8
21dbj|AK059101.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.8
22gb|AF047697.1|AF047697 Oryza sativa putative high-pI laccase mRN... 42 1.8
23gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 42 1.8
24emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 7.2
25emb|CR318662.11| Zebrafish DNA sequence from clone CH211-213L7 i... 40 7.2
26ref|XM_863193.1| PREDICTED: Canis familiaris hypothetical protei... 40 7.2
27emb|AL357060.31| Human DNA sequence from clone RP11-356I2 on chr... 40 7.2
28emb|AL355350.8| Human DNA sequence from clone RP11-483B5 on chro... 40 7.2
29emb|AL161646.10| Human DNA sequence from clone RP11-127O4 on chr... 40 7.2
30gb|AC133480.2| Homo sapiens 12 BAC RP11-12K6 (Roswell Park Cance... 40 7.2
31gb|BC032871.2| Homo sapiens cDNA clone IMAGE:5264902, partial cds 40 7.2
32gb|AC026801.7| Homo sapiens chromosome 5 clone CTD-2517O10, comp... 40 7.2
33gb|AF132123.1|AF132123 Pinus taeda laccase (Lac5) mRNA, complete... 40 7.2
34dbj|AP003240.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
35emb|CR925751.6| Zebrafish DNA sequence from clone DKEY-264M23 in... 40 7.2

>gb|AF132119.1|AF132119 Pinus taeda laccase (Lac1) mRNA, complete cds
          Length = 2048

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                            
Query: 138  aatccaggtgtgtggttcctgcactgtcattt 169
            |||||||||||||||||| |||||||||||||
Sbjct: 1649 aatccaggtgtgtggttcatgcactgtcattt 1680



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>ref|XM_467807.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1740

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 138  aatccaggtgtgtggttcctgcactgtcattttga 172
            |||||||||||||||||| |||| || ||||||||
Sbjct: 1603 aatccaggtgtgtggttcatgcattgccattttga 1637



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>ref|NM_196671.1| Oryza sativa (japonica cultivar-group) putative diphenol oxidase
            (OSJNBb0040I11.7), mRNA
          Length = 1404

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 138  aatccaggtgtgtggttcctgcactgtcattttga 172
            |||||||||||||||||| |||| || ||||||||
Sbjct: 1267 aatccaggtgtgtggttcatgcattgccattttga 1301



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>ref|NM_193864.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1800

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 138  aatccaggtgtgtggttcctgcactgtcattttga 172
            |||||||||||||||||| |||| || ||||||||
Sbjct: 1663 aatccaggtgtgtggttcatgcattgccattttga 1697



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>ref|NM_101674.3| Arabidopsis thaliana copper ion binding AT1G18140 mRNA, complete cds
          Length = 1931

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 56   gtacaacctggtggatccgccggtgaggaa 85
            ||||||| ||||||||||||||| ||||||
Sbjct: 1570 gtacaacttggtggatccgccggagaggaa 1599



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>gb|AC034107.5|T10F20 Sequence of BAC T10F20 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 81129

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 56    gtacaacctggtggatccgccggtgaggaa 85
             ||||||| ||||||||||||||| ||||||
Sbjct: 45283 gtacaacttggtggatccgccggagaggaa 45254



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>gb|AC069551.4|AC069551 Genomic sequence for Arabidopsis thaliana BAC T10O22 from chromosome I,
             complete sequence
          Length = 92948

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 56    gtacaacctggtggatccgccggtgaggaa 85
             ||||||| ||||||||||||||| ||||||
Sbjct: 30587 gtacaacttggtggatccgccggagaggaa 30558



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>gb|U73105.1|LTU73105 Liriodendron tulipifera high-pI laccase (LAC2-3) mRNA, complete cds
          Length = 2030

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 138  aatccaggtgtgtggttcctgcactg 163
            |||||||||||||||||| |||||||
Sbjct: 1689 aatccaggtgtgtggttcatgcactg 1714



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>ref|NM_190554.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1734

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 141  ccaggtgtgtggttcctgcactgtcattt 169
            |||||||| |||||| |||||||||||||
Sbjct: 1600 ccaggtgtatggttcatgcactgtcattt 1628



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>ref|NM_192960.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1689

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                 
Query: 56   gtacaacctggtggatccgccggtgaggaacaccgtc 92
            ||||||||| || || ||||||| |||||||||||||
Sbjct: 1470 gtacaacctcgtcgacccgccggagaggaacaccgtc 1506



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>gb|AC016814.14| Mus musculus chromosome 1, clone RP23-2M16, complete sequence
          Length = 247961

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 343   acagttgtttgaataaagcct 363
             |||||||||||||||||||||
Sbjct: 60287 acagttgtttgaataaagcct 60267



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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 72      ccgccggtgaggaacaccgtc 92
               |||||||||||||||||||||
Sbjct: 1591830 ccgccggtgaggaacaccgtc 1591850



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>ref|XM_389822.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09646.1)
            partial mRNA
          Length = 1719

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 138  aatccaggtgtgtggttcctgcactgtca 166
            ||||||||||| ||| |||||||||||||
Sbjct: 1522 aatccaggtgtatggctcctgcactgtca 1550



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>emb|CR847808.6| Zebrafish DNA sequence from clone CH211-151I8 in linkage group 22,
             complete sequence
          Length = 147994

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 124   gatttgtcaccaaaaatccag 144
             |||||||||||||||||||||
Sbjct: 74267 gatttgtcaccaaaaatccag 74247



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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 72      ccgccggtgaggaacaccgtc 92
               |||||||||||||||||||||
Sbjct: 1974386 ccgccggtgaggaacaccgtc 1974406



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>gb|AE011767.1| Xanthomonas axonopodis pv. citri str. 306,  section 145 of 469 of the
            complete genome
          Length = 11162

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 72   ccgccggtgaggaacaccgtc 92
            |||||||||||||||||||||
Sbjct: 4000 ccgccggtgaggaacaccgtc 4020



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 56       gtacaacctggtggatccgccggtgaggaacaccgtc 92
                ||||||||| || || ||||||| |||||||||||||
Sbjct: 25435522 gtacaacctcgtcgacccgccggagaggaacaccgtc 25435486



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 142      caggtgtgtggttcctgcactgtcattt 169
                ||||||| |||||| |||||||||||||
Sbjct: 36159539 caggtgtatggttcatgcactgtcattt 36159512



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>gb|AC130277.6| Mus musculus chromosome 1, clone RP24-387G4, complete sequence
          Length = 125118

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 343 acagttgtttgaataaagcct 363
           |||||||||||||||||||||
Sbjct: 813 acagttgtttgaataaagcct 833



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>dbj|AP004317.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0663E10
          Length = 162297

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                   
Query: 56     gtacaacctggtggatccgccggtgaggaacaccgtc 92
              ||||||||| || || ||||||| |||||||||||||
Sbjct: 125522 gtacaacctcgtcgacccgccggagaggaacaccgtc 125486



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>dbj|AK068901.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170B10, full
            insert sequence
          Length = 2066

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 141  ccaggtgtgtggttcctgcactgtcattt 169
            |||||||| |||||| |||||||||||||
Sbjct: 1716 ccaggtgtatggttcatgcactgtcattt 1744



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>dbj|AK059101.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-D01, full
           insert sequence
          Length = 644

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 141 ccaggtgtgtggttcctgcactgtcattt 169
           |||||||| |||||| |||||||||||||
Sbjct: 292 ccaggtgtatggttcatgcactgtcattt 320



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>gb|AF047697.1|AF047697 Oryza sativa putative high-pI laccase mRNA, partial cds
          Length = 1874

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 141  ccaggtgtgtggttcctgcactgtcattt 169
            |||||||| |||||| |||||||||||||
Sbjct: 1522 ccaggtgtatggttcatgcactgtcattt 1550



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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 72      ccgccggtgaggaacaccgtc 92
               |||||||||||||||||||||
Sbjct: 1996433 ccgccggtgaggaacaccgtc 1996453



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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 49      tcgcgacgtacaacctggtg 68
               ||||||||||||||||||||
Sbjct: 1635801 tcgcgacgtacaacctggtg 1635820



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>emb|CR318662.11| Zebrafish DNA sequence from clone CH211-213L7 in linkage group 10,
            complete sequence
          Length = 200648

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 413  tattgtttaatcgctgagtg 432
            ||||||||||||||||||||
Sbjct: 7594 tattgtttaatcgctgagtg 7575



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>ref|XM_863193.1| PREDICTED: Canis familiaris hypothetical protein LOC611444
           (LOC611444), mRNA
          Length = 690

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 8   cctcgcgcaggggctcgggc 27
           ||||||||||||||||||||
Sbjct: 386 cctcgcgcaggggctcgggc 405



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>emb|AL357060.31| Human DNA sequence from clone RP11-356I2 on chromosome 6 Contains
            three novel genes, the TNFAIP3 gene for tumour necrosis
            factor alpha-induced protein 3 and a CpG island, complete
            sequence
          Length = 182209

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 454  catgcatgaaaggaaatgta 473
            ||||||||||||||||||||
Sbjct: 8481 catgcatgaaaggaaatgta 8462



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>emb|AL355350.8| Human DNA sequence from clone RP11-483B5 on chromosome 10 Contains two
             novel genes, the 5'end of the gene for VPS10 domain
             receptor protein SORCS 3 (SORCS3) and a CpG island,
             complete sequence
          Length = 153764

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 221   tccaactttggattcgactcttcc 244
             |||||||||||||| |||||||||
Sbjct: 91717 tccaactttggatttgactcttcc 91740



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>emb|AL161646.10| Human DNA sequence from clone RP11-127O4 on chromosome 10 Contains two
              novel genes, the 5'end of the gene for VPS10 domain
              receptor protein SORCS 3 (SORCS3) and one CpG island,
              complete sequence
          Length = 183833

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 221    tccaactttggattcgactcttcc 244
              |||||||||||||| |||||||||
Sbjct: 177860 tccaactttggatttgactcttcc 177883



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>gb|AC133480.2| Homo sapiens 12 BAC RP11-12K6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 128301

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 319    ttgtttcgagattttcgtatttct 342
              |||||||||||||||| |||||||
Sbjct: 112267 ttgtttcgagattttcctatttct 112244



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>gb|BC032871.2| Homo sapiens cDNA clone IMAGE:5264902, partial cds
          Length = 3421

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 359 agcctaggctgggttgccttgttt 382
           |||| |||||||||||||||||||
Sbjct: 646 agcccaggctgggttgccttgttt 669



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>gb|AC026801.7| Homo sapiens chromosome 5 clone CTD-2517O10, complete sequence
          Length = 177284

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 359    agcctaggctgggttgccttgttt 382
              |||| |||||||||||||||||||
Sbjct: 109225 agcccaggctgggttgccttgttt 109248



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>gb|AF132123.1|AF132123 Pinus taeda laccase (Lac5) mRNA, complete cds
          Length = 2090

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 138  aatccaggtgtgtggttcctgcactgtcattt 169
            |||||||| || |||||| |||||||||||||
Sbjct: 1675 aatccaggggtttggttcatgcactgtcattt 1706



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>dbj|AP003240.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0406G08
          Length = 144233

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 142   caggtgtgtggttcctgcactgtcattt 169
             ||||||| |||||| |||||||||||||
Sbjct: 36552 caggtgtatggttcatgcactgtcattt 36525



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>emb|CR925751.6| Zebrafish DNA sequence from clone DKEY-264M23 in linkage group 10,
              complete sequence
          Length = 111720

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 413    tattgtttaatcgctgagtg 432
              ||||||||||||||||||||
Sbjct: 101136 tattgtttaatcgctgagtg 101117


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,891,514
Number of Sequences: 3902068
Number of extensions: 3891514
Number of successful extensions: 74651
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74506
Number of HSP's gapped (non-prelim): 145
length of query: 529
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 506
effective length of database: 17,143,297,704
effective search space: 8674508638224
effective search space used: 8674508638224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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