| Clone Name | bags18i23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF132119.1|AF132119 Pinus taeda laccase (Lac1) mRNA, complete cds Length = 2048 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 138 aatccaggtgtgtggttcctgcactgtcattt 169 |||||||||||||||||| ||||||||||||| Sbjct: 1649 aatccaggtgtgtggttcatgcactgtcattt 1680
>ref|XM_467807.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1740 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 138 aatccaggtgtgtggttcctgcactgtcattttga 172 |||||||||||||||||| |||| || |||||||| Sbjct: 1603 aatccaggtgtgtggttcatgcattgccattttga 1637
>ref|NM_196671.1| Oryza sativa (japonica cultivar-group) putative diphenol oxidase (OSJNBb0040I11.7), mRNA Length = 1404 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 138 aatccaggtgtgtggttcctgcactgtcattttga 172 |||||||||||||||||| |||| || |||||||| Sbjct: 1267 aatccaggtgtgtggttcatgcattgccattttga 1301
>ref|NM_193864.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1800 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 138 aatccaggtgtgtggttcctgcactgtcattttga 172 |||||||||||||||||| |||| || |||||||| Sbjct: 1663 aatccaggtgtgtggttcatgcattgccattttga 1697
>ref|NM_101674.3| Arabidopsis thaliana copper ion binding AT1G18140 mRNA, complete cds Length = 1931 Score = 44.1 bits (22), Expect = 0.46 Identities = 28/30 (93%) Strand = Plus / Plus Query: 56 gtacaacctggtggatccgccggtgaggaa 85 ||||||| ||||||||||||||| |||||| Sbjct: 1570 gtacaacttggtggatccgccggagaggaa 1599
>gb|AC034107.5|T10F20 Sequence of BAC T10F20 from Arabidopsis thaliana chromosome 1, complete sequence Length = 81129 Score = 44.1 bits (22), Expect = 0.46 Identities = 28/30 (93%) Strand = Plus / Minus Query: 56 gtacaacctggtggatccgccggtgaggaa 85 ||||||| ||||||||||||||| |||||| Sbjct: 45283 gtacaacttggtggatccgccggagaggaa 45254
>gb|AC069551.4|AC069551 Genomic sequence for Arabidopsis thaliana BAC T10O22 from chromosome I, complete sequence Length = 92948 Score = 44.1 bits (22), Expect = 0.46 Identities = 28/30 (93%) Strand = Plus / Minus Query: 56 gtacaacctggtggatccgccggtgaggaa 85 ||||||| ||||||||||||||| |||||| Sbjct: 30587 gtacaacttggtggatccgccggagaggaa 30558
>gb|U73105.1|LTU73105 Liriodendron tulipifera high-pI laccase (LAC2-3) mRNA, complete cds Length = 2030 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 138 aatccaggtgtgtggttcctgcactg 163 |||||||||||||||||| ||||||| Sbjct: 1689 aatccaggtgtgtggttcatgcactg 1714
>ref|NM_190554.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1734 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 141 ccaggtgtgtggttcctgcactgtcattt 169 |||||||| |||||| ||||||||||||| Sbjct: 1600 ccaggtgtatggttcatgcactgtcattt 1628
>ref|NM_192960.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1689 Score = 42.1 bits (21), Expect = 1.8 Identities = 33/37 (89%) Strand = Plus / Plus Query: 56 gtacaacctggtggatccgccggtgaggaacaccgtc 92 ||||||||| || || ||||||| ||||||||||||| Sbjct: 1470 gtacaacctcgtcgacccgccggagaggaacaccgtc 1506
>gb|AC016814.14| Mus musculus chromosome 1, clone RP23-2M16, complete sequence Length = 247961 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 343 acagttgtttgaataaagcct 363 ||||||||||||||||||||| Sbjct: 60287 acagttgtttgaataaagcct 60267
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 72 ccgccggtgaggaacaccgtc 92 ||||||||||||||||||||| Sbjct: 1591830 ccgccggtgaggaacaccgtc 1591850
>ref|XM_389822.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09646.1) partial mRNA Length = 1719 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 138 aatccaggtgtgtggttcctgcactgtca 166 ||||||||||| ||| ||||||||||||| Sbjct: 1522 aatccaggtgtatggctcctgcactgtca 1550
>emb|CR847808.6| Zebrafish DNA sequence from clone CH211-151I8 in linkage group 22, complete sequence Length = 147994 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 gatttgtcaccaaaaatccag 144 ||||||||||||||||||||| Sbjct: 74267 gatttgtcaccaaaaatccag 74247
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 72 ccgccggtgaggaacaccgtc 92 ||||||||||||||||||||| Sbjct: 1974386 ccgccggtgaggaacaccgtc 1974406
>gb|AE011767.1| Xanthomonas axonopodis pv. citri str. 306, section 145 of 469 of the complete genome Length = 11162 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 72 ccgccggtgaggaacaccgtc 92 ||||||||||||||||||||| Sbjct: 4000 ccgccggtgaggaacaccgtc 4020
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.8 Identities = 33/37 (89%) Strand = Plus / Minus Query: 56 gtacaacctggtggatccgccggtgaggaacaccgtc 92 ||||||||| || || ||||||| ||||||||||||| Sbjct: 25435522 gtacaacctcgtcgacccgccggagaggaacaccgtc 25435486 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 142 caggtgtgtggttcctgcactgtcattt 169 ||||||| |||||| ||||||||||||| Sbjct: 36159539 caggtgtatggttcatgcactgtcattt 36159512
>gb|AC130277.6| Mus musculus chromosome 1, clone RP24-387G4, complete sequence Length = 125118 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 343 acagttgtttgaataaagcct 363 ||||||||||||||||||||| Sbjct: 813 acagttgtttgaataaagcct 833
>dbj|AP004317.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0663E10 Length = 162297 Score = 42.1 bits (21), Expect = 1.8 Identities = 33/37 (89%) Strand = Plus / Minus Query: 56 gtacaacctggtggatccgccggtgaggaacaccgtc 92 ||||||||| || || ||||||| ||||||||||||| Sbjct: 125522 gtacaacctcgtcgacccgccggagaggaacaccgtc 125486
>dbj|AK068901.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170B10, full insert sequence Length = 2066 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 141 ccaggtgtgtggttcctgcactgtcattt 169 |||||||| |||||| ||||||||||||| Sbjct: 1716 ccaggtgtatggttcatgcactgtcattt 1744
>dbj|AK059101.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-D01, full insert sequence Length = 644 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 141 ccaggtgtgtggttcctgcactgtcattt 169 |||||||| |||||| ||||||||||||| Sbjct: 292 ccaggtgtatggttcatgcactgtcattt 320
>gb|AF047697.1|AF047697 Oryza sativa putative high-pI laccase mRNA, partial cds Length = 1874 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 141 ccaggtgtgtggttcctgcactgtcattt 169 |||||||| |||||| ||||||||||||| Sbjct: 1522 ccaggtgtatggttcatgcactgtcattt 1550
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 72 ccgccggtgaggaacaccgtc 92 ||||||||||||||||||||| Sbjct: 1996433 ccgccggtgaggaacaccgtc 1996453
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 tcgcgacgtacaacctggtg 68 |||||||||||||||||||| Sbjct: 1635801 tcgcgacgtacaacctggtg 1635820
>emb|CR318662.11| Zebrafish DNA sequence from clone CH211-213L7 in linkage group 10, complete sequence Length = 200648 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 tattgtttaatcgctgagtg 432 |||||||||||||||||||| Sbjct: 7594 tattgtttaatcgctgagtg 7575
>ref|XM_863193.1| PREDICTED: Canis familiaris hypothetical protein LOC611444 (LOC611444), mRNA Length = 690 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 cctcgcgcaggggctcgggc 27 |||||||||||||||||||| Sbjct: 386 cctcgcgcaggggctcgggc 405
>emb|AL357060.31| Human DNA sequence from clone RP11-356I2 on chromosome 6 Contains three novel genes, the TNFAIP3 gene for tumour necrosis factor alpha-induced protein 3 and a CpG island, complete sequence Length = 182209 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 catgcatgaaaggaaatgta 473 |||||||||||||||||||| Sbjct: 8481 catgcatgaaaggaaatgta 8462
>emb|AL355350.8| Human DNA sequence from clone RP11-483B5 on chromosome 10 Contains two novel genes, the 5'end of the gene for VPS10 domain receptor protein SORCS 3 (SORCS3) and a CpG island, complete sequence Length = 153764 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 221 tccaactttggattcgactcttcc 244 |||||||||||||| ||||||||| Sbjct: 91717 tccaactttggatttgactcttcc 91740
>emb|AL161646.10| Human DNA sequence from clone RP11-127O4 on chromosome 10 Contains two novel genes, the 5'end of the gene for VPS10 domain receptor protein SORCS 3 (SORCS3) and one CpG island, complete sequence Length = 183833 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 221 tccaactttggattcgactcttcc 244 |||||||||||||| ||||||||| Sbjct: 177860 tccaactttggatttgactcttcc 177883
>gb|AC133480.2| Homo sapiens 12 BAC RP11-12K6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 128301 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 319 ttgtttcgagattttcgtatttct 342 |||||||||||||||| ||||||| Sbjct: 112267 ttgtttcgagattttcctatttct 112244
>gb|BC032871.2| Homo sapiens cDNA clone IMAGE:5264902, partial cds Length = 3421 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 359 agcctaggctgggttgccttgttt 382 |||| ||||||||||||||||||| Sbjct: 646 agcccaggctgggttgccttgttt 669
>gb|AC026801.7| Homo sapiens chromosome 5 clone CTD-2517O10, complete sequence Length = 177284 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 359 agcctaggctgggttgccttgttt 382 |||| ||||||||||||||||||| Sbjct: 109225 agcccaggctgggttgccttgttt 109248
>gb|AF132123.1|AF132123 Pinus taeda laccase (Lac5) mRNA, complete cds Length = 2090 Score = 40.1 bits (20), Expect = 7.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 138 aatccaggtgtgtggttcctgcactgtcattt 169 |||||||| || |||||| ||||||||||||| Sbjct: 1675 aatccaggggtttggttcatgcactgtcattt 1706
>dbj|AP003240.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0406G08 Length = 144233 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 142 caggtgtgtggttcctgcactgtcattt 169 ||||||| |||||| ||||||||||||| Sbjct: 36552 caggtgtatggttcatgcactgtcattt 36525
>emb|CR925751.6| Zebrafish DNA sequence from clone DKEY-264M23 in linkage group 10, complete sequence Length = 111720 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 tattgtttaatcgctgagtg 432 |||||||||||||||||||| Sbjct: 101136 tattgtttaatcgctgagtg 101117 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,891,514 Number of Sequences: 3902068 Number of extensions: 3891514 Number of successful extensions: 74651 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74506 Number of HSP's gapped (non-prelim): 145 length of query: 529 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 506 effective length of database: 17,143,297,704 effective search space: 8674508638224 effective search space used: 8674508638224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)