ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags18i22 |
|---|---|
| Clone Library Name | barley_pub |
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 103 bits (256), Expect = 5e-22 Identities = 62/194 (31%), Positives = 94/194 (48%), Gaps = 11/194 (5%) Frame = +2 Query: 14 EFGGNDYT--FILAAGKTLDQVASYVPEVVQAISAGVEKLIKEGGRYVVVPGQLPMGCLP 187 + G ND T F+ T+++V + VP++V + SA V+K+ G R + P+GCL Sbjct: 174 DIGQNDLTEGFL---NLTVEEVNATVPDLVNSFSANVKKIYDLGARTFWIHNTGPIGCLS 230 Query: 188 IVLTLYASPNKKHYDPRTGCLTKYNALTRYHNRLLSKAIYRLRIKYPATNIIYGDYYTPV 367 +LT + K GC YN + ++ N L + + +LR P ++ D Y+ Sbjct: 231 FILTYFPWAEK----DSAGCAKAYNEVAQHFNHKLKEIVAQLRKDLPLATFVHVDIYSVK 286 Query: 368 MEFLRTPTRFGFSASSRLRVCCGAGGPYNYNLTAACGFPGAS---------ACANPATRI 520 P + GF L CCG GG YN+++TA CG + +CA P+ R+ Sbjct: 287 YSLFSEPEKHGFEFP--LITCCGYGGKYNFSVTAPCGDTVTADDGTKIVVGSCACPSVRV 344 Query: 521 NWDGIHMTETAYMY 562 NWDG H TE A Y Sbjct: 345 NWDGAHYTEAANEY 358
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 102 bits (254), Expect = 8e-22 Identities = 62/193 (32%), Positives = 86/193 (44%), Gaps = 9/193 (4%) Frame = +2 Query: 14 EFGGNDYTFILAAGKTLDQVASYVPEVVQAISAGVEKLIKEGGRYVVVPGQLPMGCLPIV 193 + G ND T A KT++QV + VPE++ ++ + +GGRY + P+GCL V Sbjct: 169 DIGQNDLTAGYFANKTVEQVETEVPEIISQFMNAIKNIYGQGGRYFWIHNTGPIGCLAYV 228 Query: 194 LTLYASPNKKHYDPRTGCLTKYNALTRYHNRLLSKAIYRLRIKYPATNIIYGDYYTPVME 373 + + PNK GC++ N L + N L +A+ LR I Y D Y+ E Sbjct: 229 IERF--PNKASDFDSHGCVSPLNHLAQQFNHALKQAVIELRSSLSEAAITYVDVYSLKHE 286 Query: 374 FLRTPTRFGFSASSRLRVCCGAGGPYNYNLTAACGFPG---------ASACANPATRINW 526 GF S L CCG GG YNYN CG C P + W Sbjct: 287 LFVHAQGHGFKGS--LVSCCGHGGKYNYNKGIGCGMKKIVKGKEVYIGKPCDEPDKAVVW 344 Query: 527 DGIHMTETAYMYI 565 DG+H T+ A +I Sbjct: 345 DGVHFTQAANKFI 357
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 65.1 bits (157), Expect = 1e-10 Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 3/185 (1%) Frame = +2 Query: 20 GGNDYT---FILAAGKTLDQVASYVPEVVQAISAGVEKLIKEGGRYVVVPGQLPMGCLPI 190 G ND F A + + + SY + + ++ V +L G R + V G P+GC+P Sbjct: 351 GSNDLIITYFGSGAQRLKNDIDSYTTIIADSAASFVLQLYGYGARRIGVIGTPPLGCVP- 409 Query: 191 VLTLYASPNKKHYDPRTGCLTKYNALTRYHNRLLSKAIYRLRIKYPATNIIYGDYYTPVM 370 + + C + N ++ N L + +L P + +Y D YT + Sbjct: 410 ---------SQRLKKKKICNEELNYASQLFNSKLLLILGQLSKTLPNSTFVYMDIYTIIS 460 Query: 371 EFLRTPTRFGFSASSRLRVCCGAGGPYNYNLTAACGFPGASACANPATRINWDGIHMTET 550 + L TP +GF + + CC G + A C + C N ++ + WDG+H T+ Sbjct: 461 QMLETPAAYGFEETK--KPCCKTG---LLSAGALCKKSTSKICPNTSSYLFWDGVHPTQR 515 Query: 551 AYMYI 565 AY I Sbjct: 516 AYKTI 520
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 50.1 bits (118), Expect = 5e-06 Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 6/185 (3%) Frame = +2 Query: 20 GGND--YTFILAAGKTL-DQVASYVPEVVQAISAGVEKLIKEGGRYVVVPGQLPMGCLPI 190 G ND YT+ + L + V S+ + + ++ V +L G R + V G P+GC P Sbjct: 268 GSNDLIYTYFGNGAQHLKNDVDSFTTMMADSAASFVLQLYGYGARRIGVIGTPPIGCTP- 326 Query: 191 VLTLYASPNKKHYDPRTGCLTKYNALTRYHNRLLSKAIYRLRIKYPATNIIYGDYYTPVM 370 + + C N + N L + +L P + I+YGD Y+ Sbjct: 327 ---------SQRVKKKKICNEDLNYAAQLFNSKLVIILGQLSKTLPNSTIVYGDIYSIFS 377 Query: 371 EFLRTPTRFGFSASSRLRVCCGAGGPYNYNLTAA---CGFPGASACANPATRINWDGIHM 541 + L +P +GF + CC G LT C +N ++ + WDG+H Sbjct: 378 KMLESPEDYGFEEIK--KPCCKIG------LTKGGVFCKERTLKNMSNASSYLFWDGLHP 429 Query: 542 TETAY 556 ++ AY Sbjct: 430 SQRAY 434
>Y089_SULAC (Q4JCG3) UPF0103 protein Saci_0089| Length = 284 Score = 32.3 bits (72), Expect = 1.1 Identities = 25/105 (23%), Positives = 44/105 (41%) Frame = +2 Query: 86 PEVVQAISAGVEKLIKEGGRYVVVPGQLPMGCLPIVLTLYASPNKKHYDPRTGCLTKYNA 265 P+V ++++ G+ KL+ G + +VV AS + HY+P + K N Sbjct: 168 PDVAESLAEGIYKLVSSGKKDIVV---------------LASSDLNHYEPHDKTIEKDNL 212 Query: 266 LTRYHNRLLSKAIYRLRIKYPATNIIYGDYYTPVMEFLRTPTRFG 400 +L K ++R+ + T YG P+M L + G Sbjct: 213 AIDEIQKLDYKGLFRVVEEKDVTACGYG----PIMTVLILAKKLG 253
>TRMB_NITMU (Q2YCZ3) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)| (tRNA(m7G46)-methyltransferase) Length = 229 Score = 31.6 bits (70), Expect = 1.8 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +1 Query: 268 HALPQQTAVQGHLSAPDQVPRDQHHLRRLLHA 363 HALP + H+ PD P+ +HH RRL+ A Sbjct: 118 HALPPECLDGVHVFFPDPWPKARHHKRRLIQA 149
>EPN3_HUMAN (Q9H201) Epsin-3 (EPS-15-interacting protein 3)| Length = 632 Score = 31.2 bits (69), Expect = 2.4 Identities = 16/48 (33%), Positives = 28/48 (58%) Frame = -1 Query: 507 GLAHALAPGKPHAAVKL*LYGPPAPQHTRSLDEALNPNLVGVLRNSIT 364 GL AL GKP + V+L L+G P+P ++ + + +G+L ++T Sbjct: 437 GLEQALPSGKPSSPVELDLFGDPSPSSKQNGTKEPDALDLGILGEALT 484
>MUC2L_RAT (P98089) Intestinal mucin-like protein (MLP) (Fragment)| Length = 837 Score = 31.2 bits (69), Expect = 2.4 Identities = 17/43 (39%), Positives = 21/43 (48%) Frame = +3 Query: 156 CRGSCQWGAFPSS*PCTPARTRSTTTPGPGA*QNTTPSRATTT 284 C CQ F S P TP+ +T P + Q TTPS +TT Sbjct: 3 CSVDCQLQVFNWSCPSTPSTPPPSTPTTPTSSQTTTPSTPSTT 45
>DPB2_YEAST (P24482) DNA polymerase epsilon subunit B (EC 2.7.7.7) (DNA| polymerase II subunit B) Length = 689 Score = 30.4 bits (67), Expect = 4.0 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +1 Query: 211 PEQEALRPPDRVPDKIQRPHALPQQTAVQGHLS 309 P E ++ PD++P K+Q L + QGHLS Sbjct: 581 PIDELVKEPDQLPQKVQETRKLVKTILDQGHLS 613
>VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor| Length = 866 Score = 30.0 bits (66), Expect = 5.3 Identities = 27/90 (30%), Positives = 35/90 (38%) Frame = +3 Query: 15 SSEGTTTPSSWPPGKPWTRSRHTCQKSYKPSQQALRS*SRKEAGTWWCRGSCQWGAFPSS 194 +S GTT SS P P T S ++ S + + S A T SS Sbjct: 42 TSSGTTNSSSSPTTSPPTTSSSPPTSTHTSSPSSTSTQSSSTAAT------------SSS 89 Query: 195 *PCTPARTRSTTTPGPGA*QNTTPSRATTT 284 P T + T S T TTP+ +TTT Sbjct: 90 APSTASSTTSIPTSTSTETTTTTPTASTTT 119
>VGLX_EHV1B (P28968) Glycoprotein X precursor| Length = 797 Score = 30.0 bits (66), Expect = 5.3 Identities = 27/90 (30%), Positives = 35/90 (38%) Frame = +3 Query: 15 SSEGTTTPSSWPPGKPWTRSRHTCQKSYKPSQQALRS*SRKEAGTWWCRGSCQWGAFPSS 194 +S GTT SS P P T S ++ S + + S A T SS Sbjct: 42 TSSGTTNSSSSPTTSPPTTSSSPPTSTHTSSPSSTSTQSSSTAAT------------SSS 89 Query: 195 *PCTPARTRSTTTPGPGA*QNTTPSRATTT 284 P T + T S T TTP+ +TTT Sbjct: 90 APSTASSTTSIPTSTSTETTTTTPTASTTT 119
>SOX9_MOUSE (Q04887) Transcription factor SOX-9| Length = 507 Score = 30.0 bits (66), Expect = 5.3 Identities = 20/53 (37%), Positives = 23/53 (43%) Frame = +1 Query: 232 PPDRVPDKIQRPHALPQQTAVQGHLSAPDQVPRDQHHLRRLLHAGDGVSQDTN 390 PP + P Q P A PQQ A AP Q Q H L + G SQ T+ Sbjct: 345 PPQQPPQAPQAPQAPPQQQAPPQQPQAPQQ---QQAHTLTTLSSEPGQSQRTH 394
>GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX)| (Endo-1,4-beta-glucanase) (Cellulase) (Fragment) Length = 224 Score = 29.6 bits (65), Expect = 6.9 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +2 Query: 512 TRINWDGIHMTETAYMYIAAGW 577 T I+WDG+H++E Y IA W Sbjct: 112 TDISWDGLHLSEIGYTKIANIW 133
>WECF_SHIFL (Q83PH8) 4-alpha-L-fucosyltransferase (EC 2.4.1.-)| (TDP-Fuc4NAc:lipid II Fuc4NAc transferase) (Fuc4NAc transferase) Length = 359 Score = 29.6 bits (65), Expect = 6.9 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = -3 Query: 259 VFCQAPGPGVVVLLVRAGVQGQDDGKAPHWQLPRHHHVPASF 134 +F + G G + LL++AG+ + + P WQ H+P F Sbjct: 270 IFARQQGIGTLCLLIQAGIPCVLNRENPFWQDMTEQHLPVLF 311
>WECF_ECOLI (P56258) 4-alpha-L-fucosyltransferase (EC 2.4.1.-)| (TDP-Fuc4NAc:lipid II Fuc4NAc transferase) (Fuc4NAc transferase) Length = 359 Score = 29.6 bits (65), Expect = 6.9 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = -3 Query: 259 VFCQAPGPGVVVLLVRAGVQGQDDGKAPHWQLPRHHHVPASF 134 +F + G G + LL++AG+ + + P WQ H+P F Sbjct: 270 IFARQQGIGTLCLLIQAGIPCVLNRENPFWQDMTEQHLPVLF 311
>WECF_ECOL6 (Q8FBP9) 4-alpha-L-fucosyltransferase (EC 2.4.1.-)| (TDP-Fuc4NAc:lipid II Fuc4NAc transferase) (Fuc4NAc transferase) Length = 359 Score = 29.6 bits (65), Expect = 6.9 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = -3 Query: 259 VFCQAPGPGVVVLLVRAGVQGQDDGKAPHWQLPRHHHVPASF 134 +F + G G + LL++AG+ + + P WQ H+P F Sbjct: 270 IFARQQGIGTLCLLIQAGIPCVLNRENPFWQDMTEQHLPVLF 311
>WECF_ECO57 (Q8XAQ8) 4-alpha-L-fucosyltransferase (EC 2.4.1.-)| (TDP-Fuc4NAc:lipid II Fuc4NAc transferase) (Fuc4NAc transferase) Length = 359 Score = 29.6 bits (65), Expect = 6.9 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = -3 Query: 259 VFCQAPGPGVVVLLVRAGVQGQDDGKAPHWQLPRHHHVPASF 134 +F + G G + LL++AG+ + + P WQ H+P F Sbjct: 270 IFARQQGIGTLCLLIQAGIPCVLNRENPFWQDMTEQHLPVLF 311
>MURE_RALSO (Q8XVI2) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 514 Score = 29.3 bits (64), Expect = 9.0 Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 11/67 (16%) Frame = +2 Query: 23 GNDYTFILAAGKTLDQVASYV-----------PEVVQAISAGVEKLIKEGGRYVVVPGQL 169 G D T KT D +YV P + QAI AGV ++ E Y VVP Sbjct: 30 GADLTSDTRKLKTGDVFVAYVLGNVRQRGDGRPHIPQAIEAGVSAVLAEAHGY-VVPADA 88 Query: 170 PMGCLPI 190 P LP+ Sbjct: 89 PARILPV 95
>MANC_KLEPN (Q48462) Mannose-1-phosphate guanylyltransferase [GDP] (EC| 2.7.7.22) (GDP-mannose pyrophosphorylase) (GMP) (ORF16) Length = 471 Score = 29.3 bits (64), Expect = 9.0 Identities = 15/57 (26%), Positives = 28/57 (49%) Frame = +2 Query: 11 GEFGGNDYTFILAAGKTLDQVASYVPEVVQAISAGVEKLIKEGGRYVVVPGQLPMGC 181 GE+ N F+ A K L ++A + P++++A A V G ++ +P + C Sbjct: 190 GEYYWNSGMFMFRAKKYLSELAKFRPDILEACQAAV-NAADNGSDFISIPHDIFCEC 245
>MANC9_ECOLI (P37753) Mannose-1-phosphate guanylyltransferase [GDP] (EC| 2.7.7.22) (GDP-mannose pyrophosphorylase) (GMP) Length = 471 Score = 29.3 bits (64), Expect = 9.0 Identities = 15/57 (26%), Positives = 28/57 (49%) Frame = +2 Query: 11 GEFGGNDYTFILAAGKTLDQVASYVPEVVQAISAGVEKLIKEGGRYVVVPGQLPMGC 181 GE+ N F+ A K L ++A + P++++A A V G ++ +P + C Sbjct: 190 GEYYWNSGMFMFRAKKYLSELAKFRPDILEACQAAV-NAADNGSDFISIPHDIFCEC 245
>APN2_SCHPO (P87175) DNA-(apurinic or apyrimidinic site) lyase 2 (EC 4.2.99.18)| (AP endonuclease 2) (Apurinic-apyrimidinic endonuclease 2) Length = 523 Score = 29.3 bits (64), Expect = 9.0 Identities = 12/31 (38%), Positives = 21/31 (67%) Frame = +2 Query: 98 QAISAGVEKLIKEGGRYVVVPGQLPMGCLPI 190 +A+ +E+LIKEG R +++ G + + C PI Sbjct: 169 KALRERIERLIKEGNRKIILVGDVNILCNPI 199
>VID21_NEUCR (Q7SBU6) Chromatin modification-related protein vid-21| Length = 2189 Score = 29.3 bits (64), Expect = 9.0 Identities = 17/72 (23%), Positives = 33/72 (45%) Frame = +1 Query: 184 SHRPDLVRQPEQEALRPPDRVPDKIQRPHALPQQTAVQGHLSAPDQVPRDQHHLRRLLHA 363 + +P ++QP+Q P + ++Q PH Q A + S Q+ + Q H ++ Sbjct: 1738 AQQPQQLQQPQQSQKTPQMQPQQQVQTPH----QQAQKAQQSQQAQLAQQQQHQQQQQQQ 1793 Query: 364 GDGVSQDTNKIR 399 G +Q +I+ Sbjct: 1794 QHGQAQSQGQIQ 1805
>CHIB_ARATH (P19171) Basic endochitinase B precursor (EC 3.2.1.14)| (Pathogenesis-related protein 3) (PR-3) (AtChiB) Length = 335 Score = 29.3 bits (64), Expect = 9.0 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 2/69 (2%) Frame = +2 Query: 389 TRFGFSASSRLRVCCGAGGPYNYN--LTAACGFPGASACANPATRINWDGIHMTETAYMY 562 ++F R C A G Y YN +TAA FPG + ATR +T++ Sbjct: 93 SQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSH-E 151 Query: 563 IAAGWLWGP 589 GW P Sbjct: 152 TTGGWATAP 160 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,830,109 Number of Sequences: 219361 Number of extensions: 1846146 Number of successful extensions: 6422 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 5920 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6406 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
