ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags18i22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_188456.1| Oryza sativa (japonica cultivar-group), Ozsa8151 predicted mRNA Length = 1137 Score = 129 bits (65), Expect = 1e-26 Identities = 175/212 (82%), Gaps = 6/212 (2%) Strand = Plus / Plus Query: 342 tctacggcgactactacacgccggtgatggagtttctcaggacaccaacaagattcgggt 401 |||||| ||||||||||| ||||||||| || || ||| || ||| | |||||||||| Sbjct: 845 tctacgccgactactacaagccggtgatcgacttcatcaagaaaccgtccagattcgggt 904 Query: 402 ttagtgcttcgtcgaggctccgcgtgtgctgcggcgccggcgg------gccgtacaact 455 | ||||| |||||||||||||| | ||||||||||| |||||| ||||||||||| Sbjct: 905 tcagtgcctcgtcgaggctccgggcgtgctgcggcggcggcggcggcgggccgtacaact 964 Query: 456 acaacttgacggcggcgtgcggctttcccggggcgagcgcgtgcgctaaccccgccacac 515 ||||| |||||||||||||||||| ||||| |||||||||||| | |||||||| | Sbjct: 965 acaacgcgacggcggcgtgcggcttccccggcgcgagcgcgtgcccggaccccgccgcgt 1024 Query: 516 gtatcaactgggacggcatccacatgacggag 547 |||| |||||||||||||||| | |||||| Sbjct: 1025 ccatcagctgggacggcatccacctcacggag 1056 Score = 63.9 bits (32), Expect = 6e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 2 ttcttgatgggagagttcggagggaacgactacaccttcatcttggccgccgggaaaacc 61 ||||| |||||||||||||| |||||||||||| |||| || |||||||||||||||| Sbjct: 508 ttcttcatgggagagttcggcgggaacgactacgtcttcctccaggccgccgggaaaacc 567
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 105 bits (53), Expect = 2e-19 Identities = 130/156 (83%), Gaps = 6/156 (3%) Strand = Plus / Plus Query: 398 gggtttagtgcttcgtcgaggctccgcgtgtgctgcggcgccggcgg------gccgtac 451 ||||| ||||| |||||||||||||| | ||||||||||| |||||| ||||||| Sbjct: 6365821 gggttcagtgcctcgtcgaggctccgggcgtgctgcggcggcggcggcggcgggccgtac 6365880 Query: 452 aactacaacttgacggcggcgtgcggctttcccggggcgagcgcgtgcgctaaccccgcc 511 ||||||||| |||||||||||||||||| ||||| |||||||||||| | |||||||| Sbjct: 6365881 aactacaacgcgacggcggcgtgcggcttccccggcgcgagcgcgtgcccggaccccgcc 6365940 Query: 512 acacgtatcaactgggacggcatccacatgacggag 547 | |||| |||||||||||||||| | |||||| Sbjct: 6365941 gcgtccatcagctgggacggcatccacctcacggag 6365976 Score = 91.7 bits (46), Expect = 2e-15 Identities = 115/138 (83%) Strand = Plus / Plus Query: 410 tcgtcgaggctccgcgtgtgctgcggcgccggcgggccgtacaactacaacttgacggcg 469 |||||||||||||| | ||||||||||| ||| |||| ||||||||||||| ||||||| Sbjct: 6362239 tcgtcgaggctccgggcgtgctgcggcggcggggggcggtacaactacaacgcgacggcg 6362298 Query: 470 gcgtgcggctttcccggggcgagcgcgtgcgctaaccccgccacacgtatcaactgggac 529 ||||||||| | |||| |||| |||||| | |||||||| | |||||||||||| Sbjct: 6362299 gcgtgcggcctcgccggcgcgacggcgtgcccggaccccgccgcgtcgatcaactgggac 6362358 Query: 530 ggcatccacatgacggag 547 ||| ||||| |||||||| Sbjct: 6362359 ggcgtccacctgacggag 6362376 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Plus Query: 2 ttcttgatgggagagttcggagggaacgactacaccttcatcttggccgccgggaaaacc 61 ||||| |||||||||||||| |||||||||||| |||| ||||||||||||| |||||| Sbjct: 6353384 ttcttcatgggagagttcggcgggaacgactacgtcttcctcttggccgccggcaaaacc 6353443 Score = 69.9 bits (35), Expect = 9e-09 Identities = 74/87 (85%) Strand = Plus / Plus Query: 128 atcaaggaaggaggcaggtacgtggtggtgccggggcagctgccaatggggtgccttccc 187 |||||||| |||| ||||||||||||||||||||| |||||||| | ||| ||||| || Sbjct: 6342163 atcaaggagggagccaggtacgtggtggtgccgggccagctgccgacgggctgcctcccg 6342222 Query: 188 atcgtcctgaccttgtacgccagcccg 214 ||| |||| || ||||||| |||||| Sbjct: 6342223 atcatcctcacgctgtacgcgagcccg 6342249 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 132 aggaaggaggcaggtacgtggtggtgccggggcagctgccaatggggtgccttcccatcg 191 |||| |||| ||||||||||||||||||||| |||||||| | ||||||||| || ||| Sbjct: 6361484 aggagggagccaggtacgtggtggtgccgggtcagctgccgacggggtgcctcccgatca 6361543 Query: 192 tcctgaccttgtacgccagcccgaac 217 |||| || ||||||| ||| ||||| Sbjct: 6361544 tcctcacgctgtacgcgagcgcgaac 6361569 Score = 65.9 bits (33), Expect = 1e-07 Identities = 62/71 (87%), Gaps = 3/71 (4%) Strand = Plus / Plus Query: 410 tcgtcgaggctccgcgtgtgctgcggcgccggcgg---gccgtacaactacaacttgacg 466 ||||||| ||| |||| |||||||||||||||||| ||||||||||||| || |||| Sbjct: 6380616 tcgtcgacgctacgcgcgtgctgcggcgccggcggcgggccgtacaactacgacgcgacg 6380675 Query: 467 gcggcgtgcgg 477 ||||||||||| Sbjct: 6380676 gcggcgtgcgg 6380686 Score = 63.9 bits (32), Expect = 6e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 2 ttcttgatgggagagttcggagggaacgactacaccttcatcttggccgccgggaaaacc 61 ||||| ||||||||||| || || ||||||||| |||||||||||||||||| |||||| Sbjct: 6376971 ttcttcatgggagagtttggtggcaacgactacgtcttcatcttggccgccggaaaaacc 6377030 Score = 63.9 bits (32), Expect = 6e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 2 ttcttgatgggagagttcggagggaacgactacaccttcatcttggccgccgggaaaacc 61 ||||| |||||||||||||| |||||||||||| |||| || |||||||||||||||| Sbjct: 6364771 ttcttcatgggagagttcggcgggaacgactacgtcttcctccaggccgccgggaaaacc 6364830 Score = 63.9 bits (32), Expect = 6e-07 Identities = 95/116 (81%) Strand = Plus / Plus Query: 432 gcggcgccggcgggccgtacaactacaacttgacggcggcgtgcggctttcccggggcga 491 |||||| ||||||| ||||||||||| || || |||||||||||||||| ||||| ||| Sbjct: 6342772 gcggcggcggcggggcgtacaactacgacgtggcggcggcgtgcggcttccccggcgcgg 6342831 Query: 492 gcgcgtgcgctaaccccgccacacgtatcaactgggacggcatccacatgacggag 547 |||||| | |||||| | | ||||||||||||||||||||| | |||||| Sbjct: 6342832 cggcgtgcccggaccccgacgcggcgatcaactgggacggcatccacctcacggag 6342887 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 131 aaggaaggaggcaggtacgtggtggtgccggggcagctgcc 171 |||||||||| || |||||||||||||||||| ||||||| Sbjct: 6377249 aaggaaggagcgagatacgtggtggtgccgggggagctgcc 6377289 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 2 ttcttgatgggagagttcggagggaacgactacaccttcatcttggccgccgg 54 ||||| ||||| |||||||| || ||||||||| |||| ||||||||||||| Sbjct: 6361260 ttcttcatgggcgagttcggcggcaacgactacgtcttcctcttggccgccgg 6361312 Score = 48.1 bits (24), Expect = 0.033 Identities = 33/36 (91%) Strand = Plus / Plus Query: 132 aggaaggaggcaggtacgtggtggtgccggggcagc 167 |||| |||| ||||||||||||||||||||| |||| Sbjct: 6355723 aggagggagccaggtacgtggtggtgccgggccagc 6355758 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 432 gcggcgccggcgggccgtacaactacaacttgacggcggcgtgcggc 478 |||||| |||||| || |||||||||||| ||||| |||||||||| Sbjct: 6356796 gcggcggcggcggaccatacaactacaacgcgacggtggcgtgcggc 6356842 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 523 ctgggacggcatccacatgacggaga 548 |||||||||| ||||||||||||||| Sbjct: 26281075 ctgggacggcgtccacatgacggaga 26281100 Score = 44.1 bits (22), Expect = 0.52 Identities = 37/42 (88%) Strand = Plus / Plus Query: 76 gtcatacgtgccagaagtcgtacaagccatctcagcaggcgt 117 ||||||||||||| | ||||| ||||||||||| || ||||| Sbjct: 6342011 gtcatacgtgccaaaggtcgtccaagccatctctgccggcgt 6342052 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Plus Query: 427 gtgctgcggcgccggcgggccgtacaactacaac 460 ||||||||||| ||| ||||||||||||| |||| Sbjct: 6320878 gtgctgcggcggcggagggccgtacaacttcaac 6320911 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 80 tacgtgccagaagtcgtacaagccatctc 108 ||||||||| ||||||| ||||||||||| Sbjct: 6377049 tacgtgccaaaagtcgtccaagccatctc 6377077 Score = 40.1 bits (20), Expect = 8.1 Identities = 32/36 (88%) Strand = Plus / Minus Query: 425 gtgtgctgcggcgccggcgggccgtacaactacaac 460 ||||||||||| | |||||||||||||||| |||| Sbjct: 6734973 gtgtgctgcggagggggcgggccgtacaacttcaac 6734938 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 342 tctacggcgactactacacgccggtgat 369 |||||| ||||||||||| ||||||||| Sbjct: 6377457 tctacgccgactactacaagccggtgat 6377484 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 342 tctacggcgactactacacgccggtgat 369 |||||| ||||||||||| ||||||||| Sbjct: 6365216 tctacgccgactactacaagccggtgat 6365243 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 520 caactgggacggcatccacatgacggag 547 ||||||||||||| ||||| |||||||| Sbjct: 6320971 caactgggacggcgtccacctgacggag 6320998
>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0515G01 Length = 175072 Score = 105 bits (53), Expect = 2e-19 Identities = 130/156 (83%), Gaps = 6/156 (3%) Strand = Plus / Plus Query: 398 gggtttagtgcttcgtcgaggctccgcgtgtgctgcggcgccggcgg------gccgtac 451 ||||| ||||| |||||||||||||| | ||||||||||| |||||| ||||||| Sbjct: 136887 gggttcagtgcctcgtcgaggctccgggcgtgctgcggcggcggcggcggcgggccgtac 136946 Query: 452 aactacaacttgacggcggcgtgcggctttcccggggcgagcgcgtgcgctaaccccgcc 511 ||||||||| |||||||||||||||||| ||||| |||||||||||| | |||||||| Sbjct: 136947 aactacaacgcgacggcggcgtgcggcttccccggcgcgagcgcgtgcccggaccccgcc 137006 Query: 512 acacgtatcaactgggacggcatccacatgacggag 547 | |||| |||||||||||||||| | |||||| Sbjct: 137007 gcgtccatcagctgggacggcatccacctcacggag 137042 Score = 91.7 bits (46), Expect = 2e-15 Identities = 115/138 (83%) Strand = Plus / Plus Query: 410 tcgtcgaggctccgcgtgtgctgcggcgccggcgggccgtacaactacaacttgacggcg 469 |||||||||||||| | ||||||||||| ||| |||| ||||||||||||| ||||||| Sbjct: 133305 tcgtcgaggctccgggcgtgctgcggcggcggggggcggtacaactacaacgcgacggcg 133364 Query: 470 gcgtgcggctttcccggggcgagcgcgtgcgctaaccccgccacacgtatcaactgggac 529 ||||||||| | |||| |||| |||||| | |||||||| | |||||||||||| Sbjct: 133365 gcgtgcggcctcgccggcgcgacggcgtgcccggaccccgccgcgtcgatcaactgggac 133424 Query: 530 ggcatccacatgacggag 547 ||| ||||| |||||||| Sbjct: 133425 ggcgtccacctgacggag 133442 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Plus Query: 2 ttcttgatgggagagttcggagggaacgactacaccttcatcttggccgccgggaaaacc 61 ||||| |||||||||||||| |||||||||||| |||| ||||||||||||| |||||| Sbjct: 124450 ttcttcatgggagagttcggcgggaacgactacgtcttcctcttggccgccggcaaaacc 124509 Score = 69.9 bits (35), Expect = 9e-09 Identities = 74/87 (85%) Strand = Plus / Plus Query: 128 atcaaggaaggaggcaggtacgtggtggtgccggggcagctgccaatggggtgccttccc 187 |||||||| |||| ||||||||||||||||||||| |||||||| | ||| ||||| || Sbjct: 113229 atcaaggagggagccaggtacgtggtggtgccgggccagctgccgacgggctgcctcccg 113288 Query: 188 atcgtcctgaccttgtacgccagcccg 214 ||| |||| || ||||||| |||||| Sbjct: 113289 atcatcctcacgctgtacgcgagcccg 113315 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 132 aggaaggaggcaggtacgtggtggtgccggggcagctgccaatggggtgccttcccatcg 191 |||| |||| ||||||||||||||||||||| |||||||| | ||||||||| || ||| Sbjct: 132550 aggagggagccaggtacgtggtggtgccgggtcagctgccgacggggtgcctcccgatca 132609 Query: 192 tcctgaccttgtacgccagcccgaac 217 |||| || ||||||| ||| ||||| Sbjct: 132610 tcctcacgctgtacgcgagcgcgaac 132635 Score = 65.9 bits (33), Expect = 1e-07 Identities = 62/71 (87%), Gaps = 3/71 (4%) Strand = Plus / Plus Query: 410 tcgtcgaggctccgcgtgtgctgcggcgccggcgg---gccgtacaactacaacttgacg 466 ||||||| ||| |||| |||||||||||||||||| ||||||||||||| || |||| Sbjct: 151682 tcgtcgacgctacgcgcgtgctgcggcgccggcggcgggccgtacaactacgacgcgacg 151741 Query: 467 gcggcgtgcgg 477 ||||||||||| Sbjct: 151742 gcggcgtgcgg 151752 Score = 63.9 bits (32), Expect = 6e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 2 ttcttgatgggagagttcggagggaacgactacaccttcatcttggccgccgggaaaacc 61 ||||| ||||||||||| || || ||||||||| |||||||||||||||||| |||||| Sbjct: 148037 ttcttcatgggagagtttggtggcaacgactacgtcttcatcttggccgccggaaaaacc 148096 Score = 63.9 bits (32), Expect = 6e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 2 ttcttgatgggagagttcggagggaacgactacaccttcatcttggccgccgggaaaacc 61 ||||| |||||||||||||| |||||||||||| |||| || |||||||||||||||| Sbjct: 135837 ttcttcatgggagagttcggcgggaacgactacgtcttcctccaggccgccgggaaaacc 135896 Score = 63.9 bits (32), Expect = 6e-07 Identities = 95/116 (81%) Strand = Plus / Plus Query: 432 gcggcgccggcgggccgtacaactacaacttgacggcggcgtgcggctttcccggggcga 491 |||||| ||||||| ||||||||||| || || |||||||||||||||| ||||| ||| Sbjct: 113838 gcggcggcggcggggcgtacaactacgacgtggcggcggcgtgcggcttccccggcgcgg 113897 Query: 492 gcgcgtgcgctaaccccgccacacgtatcaactgggacggcatccacatgacggag 547 |||||| | |||||| | | ||||||||||||||||||||| | |||||| Sbjct: 113898 cggcgtgcccggaccccgacgcggcgatcaactgggacggcatccacctcacggag 113953 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 131 aaggaaggaggcaggtacgtggtggtgccggggcagctgcc 171 |||||||||| || |||||||||||||||||| ||||||| Sbjct: 148315 aaggaaggagcgagatacgtggtggtgccgggggagctgcc 148355 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 2 ttcttgatgggagagttcggagggaacgactacaccttcatcttggccgccgg 54 ||||| ||||| |||||||| || ||||||||| |||| ||||||||||||| Sbjct: 132326 ttcttcatgggcgagttcggcggcaacgactacgtcttcctcttggccgccgg 132378 Score = 48.1 bits (24), Expect = 0.033 Identities = 33/36 (91%) Strand = Plus / Plus Query: 132 aggaaggaggcaggtacgtggtggtgccggggcagc 167 |||| |||| ||||||||||||||||||||| |||| Sbjct: 126789 aggagggagccaggtacgtggtggtgccgggccagc 126824 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 432 gcggcgccggcgggccgtacaactacaacttgacggcggcgtgcggc 478 |||||| |||||| || |||||||||||| ||||| |||||||||| Sbjct: 127862 gcggcggcggcggaccatacaactacaacgcgacggtggcgtgcggc 127908 Score = 44.1 bits (22), Expect = 0.52 Identities = 37/42 (88%) Strand = Plus / Plus Query: 76 gtcatacgtgccagaagtcgtacaagccatctcagcaggcgt 117 ||||||||||||| | ||||| ||||||||||| || ||||| Sbjct: 113077 gtcatacgtgccaaaggtcgtccaagccatctctgccggcgt 113118 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Plus Query: 427 gtgctgcggcgccggcgggccgtacaactacaac 460 ||||||||||| ||| ||||||||||||| |||| Sbjct: 91944 gtgctgcggcggcggagggccgtacaacttcaac 91977 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 80 tacgtgccagaagtcgtacaagccatctc 108 ||||||||| ||||||| ||||||||||| Sbjct: 148115 tacgtgccaaaagtcgtccaagccatctc 148143 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 342 tctacggcgactactacacgccggtgat 369 |||||| ||||||||||| ||||||||| Sbjct: 148523 tctacgccgactactacaagccggtgat 148550 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 342 tctacggcgactactacacgccggtgat 369 |||||| ||||||||||| ||||||||| Sbjct: 136282 tctacgccgactactacaagccggtgat 136309 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 520 caactgggacggcatccacatgacggag 547 ||||||||||||| ||||| |||||||| Sbjct: 92037 caactgggacggcgtccacctgacggag 92064
>ref|NM_188451.1| Oryza sativa (japonica cultivar-group), Ozsa8146 predicted mRNA Length = 1194 Score = 93.7 bits (47), Expect = 6e-16 Identities = 116/139 (83%) Strand = Plus / Plus Query: 76 gtcatacgtgccagaagtcgtacaagccatctcagcaggcgttgagaagttaatcaagga 135 ||||||||||||| | ||||| ||||||||||| || ||||| ||| | | |||||||| Sbjct: 588 gtcatacgtgccaaaggtcgtccaagccatctctgccggcgtcgaggcggtgatcaagga 647 Query: 136 aggaggcaggtacgtggtggtgccggggcagctgccaatggggtgccttcccatcgtcct 195 |||| ||||||||||||||||||||| |||||||| | ||| ||||| || ||| |||| Sbjct: 648 gggagccaggtacgtggtggtgccgggccagctgccgacgggctgcctcccgatcatcct 707 Query: 196 gaccttgtacgccagcccg 214 || ||||||| |||||| Sbjct: 708 cacgctgtacgcgagcccg 726 Score = 63.9 bits (32), Expect = 6e-07 Identities = 95/116 (81%) Strand = Plus / Plus Query: 432 gcggcgccggcgggccgtacaactacaacttgacggcggcgtgcggctttcccggggcga 491 |||||| ||||||| ||||||||||| || || |||||||||||||||| ||||| ||| Sbjct: 947 gcggcggcggcggggcgtacaactacgacgtggcggcggcgtgcggcttccccggcgcgg 1006 Query: 492 gcgcgtgcgctaaccccgccacacgtatcaactgggacggcatccacatgacggag 547 |||||| | |||||| | | ||||||||||||||||||||| | |||||| Sbjct: 1007 cggcgtgcccggaccccgacgcggcgatcaactgggacggcatccacctcacggag 1062
>dbj|AK104443.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-G04, full insert sequence Length = 1526 Score = 93.7 bits (47), Expect = 6e-16 Identities = 116/139 (83%) Strand = Plus / Plus Query: 76 gtcatacgtgccagaagtcgtacaagccatctcagcaggcgttgagaagttaatcaagga 135 ||||||||||||| | ||||| ||||||||||| || ||||| ||| | | |||||||| Sbjct: 658 gtcatacgtgccaaaggtcgtccaagccatctctgccggcgtcgaggcggtgatcaagga 717 Query: 136 aggaggcaggtacgtggtggtgccggggcagctgccaatggggtgccttcccatcgtcct 195 |||| ||||||||||||||||||||| |||||||| | ||| ||||| || ||| |||| Sbjct: 718 gggagccaggtacgtggtggtgccgggccagctgccgacgggctgcctcccgatcatcct 777 Query: 196 gaccttgtacgccagcccg 214 || ||||||| |||||| Sbjct: 778 cacgctgtacgcgagcccg 796 Score = 63.9 bits (32), Expect = 6e-07 Identities = 95/116 (81%) Strand = Plus / Plus Query: 432 gcggcgccggcgggccgtacaactacaacttgacggcggcgtgcggctttcccggggcga 491 |||||| ||||||| ||||||||||| || || |||||||||||||||| ||||| ||| Sbjct: 1017 gcggcggcggcggggcgtacaactacgacgtggcggcggcgtgcggcttccccggcgcgg 1076 Query: 492 gcgcgtgcgctaaccccgccacacgtatcaactgggacggcatccacatgacggag 547 |||||| | |||||| | | ||||||||||||||||||||| | |||||| Sbjct: 1077 cggcgtgcccggaccccgacgcggcgatcaactgggacggcatccacctcacggag 1132
>dbj|AK058429.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-E09, full insert sequence Length = 1531 Score = 93.7 bits (47), Expect = 6e-16 Identities = 116/139 (83%) Strand = Plus / Plus Query: 76 gtcatacgtgccagaagtcgtacaagccatctcagcaggcgttgagaagttaatcaagga 135 ||||||||||||| | ||||| ||||||||||| || ||||| ||| | | |||||||| Sbjct: 658 gtcatacgtgccaaaggtcgtccaagccatctctgccggcgtcgaggcggtgatcaagga 717 Query: 136 aggaggcaggtacgtggtggtgccggggcagctgccaatggggtgccttcccatcgtcct 195 |||| ||||||||||||||||||||| |||||||| | ||| ||||| || ||| |||| Sbjct: 718 gggagccaggtacgtggtggtgccgggccagctgccgacgggctgcctcccgatcatcct 777 Query: 196 gaccttgtacgccagcccg 214 || ||||||| |||||| Sbjct: 778 cacgctgtacgcgagcccg 796 Score = 63.9 bits (32), Expect = 6e-07 Identities = 95/116 (81%) Strand = Plus / Plus Query: 432 gcggcgccggcgggccgtacaactacaacttgacggcggcgtgcggctttcccggggcga 491 |||||| ||||||| ||||||||||| || || |||||||||||||||| ||||| ||| Sbjct: 1017 gcggcggcggcggggcgtacaactacgacgtggcggcggcgtgcggcttccccggcgcgg 1076 Query: 492 gcgcgtgcgctaaccccgccacacgtatcaactgggacggcatccacatgacggag 547 |||||| | |||||| | | ||||||||||||||||||||| | |||||| Sbjct: 1077 cggcgtgcccggaccccgacgcggcgatcaactgggacggcatccacctcacggag 1132
>ref|NM_188455.1| Oryza sativa (japonica cultivar-group), Ozsa8150 predicted mRNA Length = 1149 Score = 91.7 bits (46), Expect = 2e-15 Identities = 115/138 (83%) Strand = Plus / Plus Query: 410 tcgtcgaggctccgcgtgtgctgcggcgccggcgggccgtacaactacaacttgacggcg 469 |||||||||||||| | ||||||||||| ||| |||| ||||||||||||| ||||||| Sbjct: 931 tcgtcgaggctccgggcgtgctgcggcggcggggggcggtacaactacaacgcgacggcg 990 Query: 470 gcgtgcggctttcccggggcgagcgcgtgcgctaaccccgccacacgtatcaactgggac 529 ||||||||| | |||| |||| |||||| | |||||||| | |||||||||||| Sbjct: 991 gcgtgcggcctcgccggcgcgacggcgtgcccggaccccgccgcgtcgatcaactgggac 1050 Query: 530 ggcatccacatgacggag 547 ||| ||||| |||||||| Sbjct: 1051 ggcgtccacctgacggag 1068 Score = 79.8 bits (40), Expect = 9e-12 Identities = 172/216 (79%) Strand = Plus / Plus Query: 2 ttcttgatgggagagttcggagggaacgactacaccttcatcttggccgccgggaaaacc 61 ||||| ||||| |||||||| || ||||||||| |||| ||||||||||||| || ||| Sbjct: 523 ttcttcatgggcgagttcggcggcaacgactacgtcttcctcttggccgccggcaagacc 582 Query: 62 ttggaccaggtcgcgtcatacgtgccagaagtcgtacaagccatctcagcaggcgttgag 121 | ||| ||| | ||| ||||||||| | ||||| || ||||| || ||||| ||| Sbjct: 583 gtcgacgaggccatgtcgtacgtgccaaaggtcgtcggagttatctctgccggcgtcgag 642 Query: 122 aagttaatcaaggaaggaggcaggtacgtggtggtgccggggcagctgccaatggggtgc 181 | | ||| |||| |||| ||||||||||||||||||||| |||||||| | ||||||| Sbjct: 643 gcggtgatcgaggagggagccaggtacgtggtggtgccgggtcagctgccgacggggtgc 702 Query: 182 cttcccatcgtcctgaccttgtacgccagcccgaac 217 || || ||| |||| || ||||||| ||| ||||| Sbjct: 703 ctcccgatcatcctcacgctgtacgcgagcgcgaac 738
>ref|NM_188454.1| Oryza sativa (japonica cultivar-group), Ozsa8149 predicted mRNA Length = 1137 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Plus Query: 2 ttcttgatgggagagttcggagggaacgactacaccttcatcttggccgccgggaaaacc 61 ||||| |||||||||||||| |||||||||||| |||| ||||||||||||| |||||| Sbjct: 499 ttcttcatgggagagttcggcgggaacgactacgtcttcctcttggccgccggcaaaacc 558 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 432 gcggcgccggcgggccgtacaactacaacttgacggcggcgtgcggc 478 |||||| |||||| || |||||||||||| ||||| |||||||||| Sbjct: 935 gcggcggcggcggaccatacaactacaacgcgacggtggcgtgcggc 981
>dbj|AK107557.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-B05, full insert sequence Length = 1723 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Plus Query: 2 ttcttgatgggagagttcggagggaacgactacaccttcatcttggccgccgggaaaacc 61 ||||| |||||||||||||| |||||||||||| |||| ||||||||||||| |||||| Sbjct: 728 ttcttcatgggagagttcggcgggaacgactacgtcttcctcttggccgccggcaaaacc 787 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 432 gcggcgccggcgggccgtacaactacaacttgacggcggcgtgcggc 478 |||||| |||||| || |||||||||||| ||||| |||||||||| Sbjct: 1164 gcggcggcggcggaccatacaactacaacgcgacggtggcgtgcggc 1210
>ref|NM_188460.1| Oryza sativa (japonica cultivar-group), Ozsa8155 predicted mRNA Length = 1110 Score = 65.9 bits (33), Expect = 1e-07 Identities = 113/139 (81%), Gaps = 3/139 (2%) Strand = Plus / Plus Query: 342 tctacggcgactactacacgccggtgatggagtttctcaggacaccaacaagattcgggt 401 |||||| ||||||||||| ||||||||| || || ||| || ||| | |||||||| | Sbjct: 821 tctacgccgactactacaagccggtgatcgacttcatcaagaaaccggccagattcggat 880 Query: 402 ttagtgcttcgtcgaggctccgcgtgtgctgcggcgc---cggcgggccgtacaactaca 458 | | | ||||||| ||| |||| |||||||||||| ||||||||||||||||||| Sbjct: 881 tcaacggctcgtcgacgctacgcgcgtgctgcggcgccggcggcgggccgtacaactacg 940 Query: 459 acttgacggcggcgtgcgg 477 || ||||||||||||||| Sbjct: 941 acgcgacggcggcgtgcgg 959 Score = 63.9 bits (32), Expect = 6e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 2 ttcttgatgggagagttcggagggaacgactacaccttcatcttggccgccgggaaaacc 61 ||||| ||||||||||| || || ||||||||| |||||||||||||||||| |||||| Sbjct: 481 ttcttcatgggagagtttggtggcaacgactacgtcttcatcttggccgccggaaaaacc 540 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 131 aaggaaggaggcaggtacgtggtggtgccggggcagctgcc 171 |||||||||| || |||||||||||||||||| ||||||| Sbjct: 613 aaggaaggagcgagatacgtggtggtgccgggggagctgcc 653 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 80 tacgtgccagaagtcgtacaagccatctc 108 ||||||||| ||||||| ||||||||||| Sbjct: 559 tacgtgccaaaagtcgtccaagccatctc 587
>dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0665D10 Length = 134967 Score = 65.9 bits (33), Expect = 1e-07 Identities = 62/71 (87%), Gaps = 3/71 (4%) Strand = Plus / Plus Query: 410 tcgtcgaggctccgcgtgtgctgcggcgccggcgg---gccgtacaactacaacttgacg 466 ||||||| ||| |||| |||||||||||||||||| ||||||||||||| || |||| Sbjct: 3011 tcgtcgacgctacgcgcgtgctgcggcgccggcggcgggccgtacaactacgacgcgacg 3070 Query: 467 gcggcgtgcgg 477 ||||||||||| Sbjct: 3071 gcggcgtgcgg 3081
>gb|AY104591.1| Zea mays PCO098873 mRNA sequence Length = 1094 Score = 60.0 bits (30), Expect = 9e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 427 gtgctgcggcgccggcgggccgtacaactacaac 460 ||||||||||| |||||||||||||||||||||| Sbjct: 1052 gtgctgcggcggcggcgggccgtacaactacaac 1085
>ref|XM_476138.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1113 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 427 gtgctgcggcgccggcgggccgtacaactacaacttgacggcggcgtgcgg 477 ||||||||||| ||| |||||||||||||||||| ||| ||| ||||||| Sbjct: 900 gtgctgcggcggcggtgggccgtacaactacaacatgagcgcgtcgtgcgg 950
>gb|AC104705.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1008_D08, complete sequence Length = 94286 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 427 gtgctgcggcgccggcgggccgtacaactacaacttgacggcggcgtgcgg 477 ||||||||||| ||| |||||||||||||||||| ||| ||| ||||||| Sbjct: 46066 gtgctgcggcggcggtgggccgtacaactacaacatgagcgcgtcgtgcgg 46116 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 428 tgctgcggcgccggcgggccgtacaactacaac 460 |||||||||| ||||||||||||||||||||| Sbjct: 61727 tgctgcggcgggggcgggccgtacaactacaac 61759 Score = 44.1 bits (22), Expect = 0.52 Identities = 52/62 (83%) Strand = Plus / Plus Query: 519 tcaactgggacggcatccacatgacggagactgcatacatgtacatcgccgccggttggc 578 ||||||||||||||||||| | || ||| | ||||||| |||| |||||| ||| |||| Sbjct: 61818 tcaactgggacggcatccatctcaccgaggccgcatacaagtacgtcgccggcggctggc 61877 Query: 579 tc 580 || Sbjct: 61878 tc 61879 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 132 aggaaggaggcaggtacgtggtggtgccgggg 163 ||||||||| ||||||||||||||| ||||| Sbjct: 58975 aggaaggagcgaggtacgtggtggtgacgggg 59006
>gb|AC130599.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0016G07, complete sequence Length = 123167 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 427 gtgctgcggcgccggcgggccgtacaactacaacttgacggcggcgtgcgg 477 ||||||||||| ||| |||||||||||||||||| ||| ||| ||||||| Sbjct: 112967 gtgctgcggcggcggtgggccgtacaactacaacatgagcgcgtcgtgcgg 113017
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 427 gtgctgcggcgccggcgggccgtacaactacaacttgacggcggcgtgcgg 477 ||||||||||| ||| |||||||||||||||||| ||| ||| ||||||| Sbjct: 6741805 gtgctgcggcggcggtgggccgtacaactacaacatgagcgcgtcgtgcgg 6741855 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 428 tgctgcggcgccggcgggccgtacaactacaac 460 |||||||||| ||||||||||||||||||||| Sbjct: 6757466 tgctgcggcgggggcgggccgtacaactacaac 6757498 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Minus Query: 428 tgctgcggcgccggcgggccgtacaact 455 |||||||||| ||||||||||||||||| Sbjct: 24822026 tgctgcggcggcggcgggccgtacaact 24821999 Score = 44.1 bits (22), Expect = 0.52 Identities = 52/62 (83%) Strand = Plus / Plus Query: 519 tcaactgggacggcatccacatgacggagactgcatacatgtacatcgccgccggttggc 578 ||||||||||||||||||| | || ||| | ||||||| |||| |||||| ||| |||| Sbjct: 6757557 tcaactgggacggcatccatctcaccgaggccgcatacaagtacgtcgccggcggctggc 6757616 Query: 579 tc 580 || Sbjct: 6757617 tc 6757618 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 11 ggagagttcggagggaacgactacaccttcat 42 |||||||| |||| ||||||||||| |||||| Sbjct: 24830918 ggagagtttggagtgaacgactacaacttcat 24830887 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 132 aggaaggaggcaggtacgtggtggtgccgggg 163 ||||||||| ||||||||||||||| ||||| Sbjct: 6754714 aggaaggagcgaggtacgtggtggtgacgggg 6754745
>dbj|AK122049.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114D08, full insert sequence Length = 1551 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 427 gtgctgcggcgccggcgggccgtacaactacaacttgacggcggcgtgcgg 477 ||||||||||| ||| |||||||||||||||||| ||| ||| ||||||| Sbjct: 990 gtgctgcggcggcggtgggccgtacaactacaacatgagcgcgtcgtgcgg 1040
>ref|XM_476139.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1143 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 428 tgctgcggcgccggcgggccgtacaactacaac 460 |||||||||| ||||||||||||||||||||| Sbjct: 943 tgctgcggcgggggcgggccgtacaactacaac 975 Score = 44.1 bits (22), Expect = 0.52 Identities = 52/62 (83%) Strand = Plus / Plus Query: 519 tcaactgggacggcatccacatgacggagactgcatacatgtacatcgccgccggttggc 578 ||||||||||||||||||| | || ||| | ||||||| |||| |||||| ||| |||| Sbjct: 1034 tcaactgggacggcatccatctcaccgaggccgcatacaagtacgtcgccggcggctggc 1093 Query: 579 tc 580 || Sbjct: 1094 tc 1095 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 132 aggaaggaggcaggtacgtggtggtgccgggg 163 ||||||||| ||||||||||||||| ||||| Sbjct: 638 aggaaggagcgaggtacgtggtggtgacgggg 669
>ref|XM_470389.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1425 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 519 tcaactgggacggcatccacatgacggag 547 |||||||||||||| |||||||||||||| Sbjct: 1030 tcaactgggacggcgtccacatgacggag 1058
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 519 tcaactgggacggcatccacatgacggag 547 |||||||||||||| |||||||||||||| Sbjct: 35200051 tcaactgggacggcgtccacatgacggag 35200023 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 cccggggcgagcgcgtgcgc 501 |||||||||||||||||||| Sbjct: 22381434 cccggggcgagcgcgtgcgc 22381453
>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence, complete sequence Length = 156606 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 519 tcaactgggacggcatccacatgacggag 547 |||||||||||||| |||||||||||||| Sbjct: 78812 tcaactgggacggcgtccacatgacggag 78784
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 519 tcaactgggacggcatccacatgacggag 547 |||||||||||||| |||||||||||||| Sbjct: 35290123 tcaactgggacggcgtccacatgacggag 35290095 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 cccggggcgagcgcgtgcgc 501 |||||||||||||||||||| Sbjct: 22374463 cccggggcgagcgcgtgcgc 22374482
>dbj|AK108050.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-G04, full insert sequence Length = 1371 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 519 tcaactgggacggcatccacatgacggag 547 |||||||||||||| |||||||||||||| Sbjct: 811 tcaactgggacggcgtccacatgacggag 783
>dbj|AK103825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147L02, full insert sequence Length = 586 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 519 tcaactgggacggcatccacatgacggag 547 |||||||||||||| |||||||||||||| Sbjct: 322 tcaactgggacggcgtccacatgacggag 350
>dbj|AK059168.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-E06, full insert sequence Length = 1425 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 519 tcaactgggacggcatccacatgacggag 547 |||||||||||||| |||||||||||||| Sbjct: 1030 tcaactgggacggcgtccacatgacggag 1058
>gb|AC113334.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1123_F01, complete sequence Length = 118799 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Minus Query: 428 tgctgcggcgccggcgggccgtacaact 455 |||||||||| ||||||||||||||||| Sbjct: 104009 tgctgcggcggcggcgggccgtacaact 103982 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 11 ggagagttcggagggaacgactacaccttcat 42 |||||||| |||| ||||||||||| |||||| Sbjct: 112901 ggagagtttggagtgaacgactacaacttcat 112870
>gb|AC129719.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0013J02, complete sequence Length = 118026 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Minus Query: 428 tgctgcggcgccggcgggccgtacaact 455 |||||||||| ||||||||||||||||| Sbjct: 8911 tgctgcggcggcggcgggccgtacaact 8884 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 11 ggagagttcggagggaacgactacaccttcat 42 |||||||| |||| ||||||||||| |||||| Sbjct: 17803 ggagagtttggagtgaacgactacaacttcat 17772
>gb|BT008971.1| Triticum aestivum clone wdk1c.pk023.m3:fis, full insert mRNA sequence Length = 1472 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 9 tgggagagttcggagggaacgactaca 35 ||||||||||||| ||||||||||||| Sbjct: 566 tgggagagttcggggggaacgactaca 592 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 523 ctgggacggcatccacatgac 543 ||||||||||||||||||||| Sbjct: 1080 ctgggacggcatccacatgac 1100
>ref|NM_188447.1| Oryza sativa (japonica cultivar-group), Ozsa8142 predicted mRNA Length = 1125 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Plus Query: 427 gtgctgcggcgccggcgggccgtacaactacaac 460 ||||||||||| ||| ||||||||||||| |||| Sbjct: 939 gtgctgcggcggcggagggccgtacaacttcaac 972 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 520 caactgggacggcatccacatgacggag 547 ||||||||||||| ||||| |||||||| Sbjct: 1032 caactgggacggcgtccacctgacggag 1059
>ref|NM_192370.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1143 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 523 ctgggacggcatccacatgacggaga 548 |||||||||| ||||||||||||||| Sbjct: 1050 ctgggacggcgtccacatgacggaga 1075
>gb|BT009193.1| Triticum aestivum clone wle1.pk0001.d6:fis, full insert mRNA sequence Length = 1342 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Plus Query: 427 gtgctgcggcgccggcgggccgtacaactacaac 460 ||||||||||| ||| ||||||||||||| |||| Sbjct: 1019 gtgctgcggcggcggggggccgtacaacttcaac 1052 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 520 caactgggacggcatccacatgacggag 547 ||||||||||||| ||||| |||||||| Sbjct: 1112 caactgggacggcgtccacctgacggag 1139 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 150 tggtggtgccggggcagctgccaatggggtgc 181 |||||||||||||| | ||||| ||||||||| Sbjct: 748 tggtggtgccggggaacctgccgatggggtgc 779
>dbj|AP003792.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1159_D09 Length = 147770 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 523 ctgggacggcatccacatgacggaga 548 |||||||||| ||||||||||||||| Sbjct: 93756 ctgggacggcgtccacatgacggaga 93781
>dbj|AK119642.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-F10, full insert sequence Length = 1452 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Plus Query: 427 gtgctgcggcgccggcgggccgtacaactacaac 460 ||||||||||| ||| ||||||||||||| |||| Sbjct: 1002 gtgctgcggcggcggagggccgtacaacttcaac 1035 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 520 caactgggacggcatccacatgacggag 547 ||||||||||||| ||||| |||||||| Sbjct: 1095 caactgggacggcgtccacctgacggag 1122
>dbj|AK119598.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-E01, full insert sequence Length = 1520 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Plus Query: 427 gtgctgcggcgccggcgggccgtacaactacaac 460 ||||||||||| ||| ||||||||||||| |||| Sbjct: 999 gtgctgcggcggcggagggccgtacaacttcaac 1032 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 520 caactgggacggcatccacatgacggag 547 ||||||||||||| ||||| |||||||| Sbjct: 1092 caactgggacggcgtccacctgacggag 1119
>dbj|AK061118.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-F05, full insert sequence Length = 1577 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Plus Query: 427 gtgctgcggcgccggcgggccgtacaactacaac 460 ||||||||||| ||| ||||||||||||| |||| Sbjct: 1002 gtgctgcggcggcggagggccgtacaacttcaac 1035 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 520 caactgggacggcatccacatgacggag 547 ||||||||||||| ||||| |||||||| Sbjct: 1095 caactgggacggcgtccacctgacggag 1122
>dbj|AK059088.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-B07, full insert sequence Length = 1691 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Plus Query: 427 gtgctgcggcgccggcgggccgtacaactacaac 460 ||||||||||| ||| ||||||||||||| |||| Sbjct: 1262 gtgctgcggcggcggagggccgtacaacttcaac 1295 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 520 caactgggacggcatccacatgacggag 547 ||||||||||||| ||||| |||||||| Sbjct: 1355 caactgggacggcgtccacctgacggag 1382
>gb|BT017832.1| Zea mays clone EL01N0509A10.c mRNA sequence Length = 1420 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 523 ctgggacggcatccacatgac 543 ||||||||||||||||||||| Sbjct: 1143 ctgggacggcatccacatgac 1163
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 523 ctgggacggcatccacatgac 543 ||||||||||||||||||||| Sbjct: 19518672 ctgggacggcatccacatgac 19518652
>dbj|AP004794.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0506C10 Length = 150549 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 523 ctgggacggcatccacatgac 543 ||||||||||||||||||||| Sbjct: 404 ctgggacggcatccacatgac 384
>dbj|AP004749.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0410C01 Length = 138424 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 523 ctgggacggcatccacatgac 543 ||||||||||||||||||||| Sbjct: 137081 ctgggacggcatccacatgac 137061
>dbj|AK067909.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123P18, full insert sequence Length = 1580 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 523 ctgggacggcatccacatgac 543 ||||||||||||||||||||| Sbjct: 1159 ctgggacggcatccacatgac 1179
>dbj|AK061422.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-F12, full insert sequence Length = 1323 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 523 ctgggacggcatccacatgac 543 ||||||||||||||||||||| Sbjct: 1155 ctgggacggcatccacatgac 1175
>gb|AY107619.1| Zea mays PCO073125 mRNA sequence Length = 617 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 523 ctgggacggcatccacatgac 543 ||||||||||||||||||||| Sbjct: 231 ctgggacggcatccacatgac 251
>gb|AY104167.1| Zea mays PCO062696 mRNA sequence Length = 1460 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 523 ctgggacggcatccacatgacggag 547 |||||||||||||||| |||||||| Sbjct: 1066 ctgggacggcatccacctgacggag 1090
>ref|NM_188523.1| Oryza sativa (japonica cultivar-group), Ozsa8192 predicted mRNA Length = 651 Score = 40.1 bits (20), Expect = 8.1 Identities = 32/36 (88%) Strand = Plus / Plus Query: 425 gtgtgctgcggcgccggcgggccgtacaactacaac 460 ||||||||||| | |||||||||||||||| |||| Sbjct: 100 gtgtgctgcggagggggcgggccgtacaacttcaac 135
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 acggcgactactacacgccg 364 |||||||||||||||||||| Sbjct: 2608441 acggcgactactacacgccg 2608460
>ref|XM_479304.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1283 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 427 gtgctgcggcgccggcgggccgtacaac 454 |||||||| || |||||||||||||||| Sbjct: 1009 gtgctgcgccggcggcgggccgtacaac 1036
>gb|AC097276.9| Oryza sativa chromosome 3 BAC OJ1519_A12 genomic sequence, complete sequence Length = 73070 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 cccggggcgagcgcgtgcgc 501 |||||||||||||||||||| Sbjct: 31010 cccggggcgagcgcgtgcgc 30991
>gb|AC145076.8| Mus musculus chromosome 10, clone RP24-528G5, complete sequence Length = 224534 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 gatggagtttctcaggacac 386 |||||||||||||||||||| Sbjct: 90628 gatggagtttctcaggacac 90609
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 427 gtgctgcggcgccggcgggccgtacaac 454 |||||||| || |||||||||||||||| Sbjct: 26674332 gtgctgcgccggcggcgggccgtacaac 26674305
>dbj|AP001800.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0443E05 Length = 176935 Score = 40.1 bits (20), Expect = 8.1 Identities = 32/36 (88%) Strand = Plus / Minus Query: 425 gtgtgctgcggcgccggcgggccgtacaactacaac 460 ||||||||||| | |||||||||||||||| |||| Sbjct: 87125 gtgtgctgcggagggggcgggccgtacaacttcaac 87090
>dbj|AP002835.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0417G05 Length = 147803 Score = 40.1 bits (20), Expect = 8.1 Identities = 32/36 (88%) Strand = Plus / Minus Query: 425 gtgtgctgcggcgccggcgggccgtacaactacaac 460 ||||||||||| | |||||||||||||||| |||| Sbjct: 17034 gtgtgctgcggagggggcgggccgtacaacttcaac 16999
>dbj|AP003765.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1003_C06 Length = 143168 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 427 gtgctgcggcgccggcgggccgtacaac 454 |||||||| || |||||||||||||||| Sbjct: 21189 gtgctgcgccggcggcgggccgtacaac 21162
>dbj|AP004671.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0524G08 Length = 146690 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 427 gtgctgcggcgccggcgggccgtacaac 454 |||||||| || |||||||||||||||| Sbjct: 91936 gtgctgcgccggcggcgggccgtacaac 91909
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 424 cgtgtgctgcggcgccggcg 443 |||||||||||||||||||| Sbjct: 94097 cgtgtgctgcggcgccggcg 94116
>emb|BX548072.14| Zebrafish DNA sequence from clone DKEYP-84A8 in linkage group 22, complete sequence Length = 188936 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 agcccgaacaagaagcacta 228 |||||||||||||||||||| Sbjct: 30788 agcccgaacaagaagcacta 30769
>dbj|AK058442.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-G02, full insert sequence Length = 1283 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 427 gtgctgcggcgccggcgggccgtacaac 454 |||||||| || |||||||||||||||| Sbjct: 1009 gtgctgcgccggcggcgggccgtacaac 1036
>gb|AC006947.2|AC006947 Homo sapiens chromosome 17, clone hRPK.115_C_3, complete sequence Length = 175775 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 gatggagtttctcaggacac 386 |||||||||||||||||||| Sbjct: 75725 gatggagtttctcaggacac 75706 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,601,304 Number of Sequences: 3902068 Number of extensions: 3601304 Number of successful extensions: 60383 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59763 Number of HSP's gapped (non-prelim): 612 length of query: 597 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 574 effective length of database: 17,143,297,704 effective search space: 9840252882096 effective search space used: 9840252882096 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
