ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags18i02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VC04_SWPVK (P32228) Protein C4 33 0.79
2LEPA_BACHD (Q9KD76) GTP-binding protein lepA 30 3.9
3LEPA_CLOAB (Q97JJ6) GTP-binding protein lepA 29 8.7
42ACA_HUMAN (Q06190) Serine/threonine-protein phosphatase 2A 72/1... 29 8.7

>VC04_SWPVK (P32228) Protein C4|
          Length = 530

 Score = 32.7 bits (73), Expect = 0.79
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
 Frame = +1

Query: 34  CAIRIWSLEGPDGWVVKHRLSM-------VDVFGRDMLLRTNSEGYWCFDYDIMAVDLE 189
           C I+I S+E  +  +  HRL +        ++F  D + + N E Y C DYDI+ + LE
Sbjct: 18  CDIKIVSIEN-NKTISAHRLILSMYSKYFYNIFNSDFIDKNNDEIYICADYDILYIILE 75



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>LEPA_BACHD (Q9KD76) GTP-binding protein lepA|
          Length = 609

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
 Frame = +1

Query: 127 LRTNSEGYWCFDYDIMAV---DLERELVILDDKIADKIISVSMRTGKGSQFQKIPRRFTE 297
           L++N++GY  FDY+++     +L +  ++L+ ++ D +  +  R     + ++I  +  E
Sbjct: 468 LKSNTKGYASFDYELIGYKPSNLVKMDILLNGEVVDALSVIVHRDSAYERGKQIVEKLKE 527

Query: 298 LY-RSLFHVPYYGKV 339
           L  R  F VP    +
Sbjct: 528 LIPRQQFEVPVQASI 542



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>LEPA_CLOAB (Q97JJ6) GTP-binding protein lepA|
          Length = 602

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 17/75 (22%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
 Frame = +1

Query: 127 LRTNSEGYWCFDYDI---MAVDLERELVILDDKIADKIISVSMRTGKGSQFQKIPRRFTE 297
           L++ ++GY  FDY++   M  +L +  +IL+ ++ D +  +  +    ++ + +  +  E
Sbjct: 465 LKSRTKGYASFDYELDGYMRTELVKLDIILNSEVVDALSMIVPKDRAYAKGRTMAEKLKE 524

Query: 298 LY-RSLFHVPYYGKV 339
           +  R LF +P    V
Sbjct: 525 IIPRQLFEIPIQAAV 539



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>2ACA_HUMAN (Q06190) Serine/threonine-protein phosphatase 2A 72/130 kDa|
           regulatory subunit B (PP2A, subunit B, B''-PR72/PR130)
           (PP2A, subunit B, B72/B130 isoforms) (PP2A, subunit B,
           PR72/PR130 isoforms) (PP2A, subunit B, R3 isoform)
          Length = 1150

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 572 LQLSKVSEHSLIIVDRSKRQVLHTITRTAHT 480
           L +S V+ +S +++DR   Q +H  T T HT
Sbjct: 7   LVVSTVNHYSSVVIDRRFEQAIHYCTGTCHT 37


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,371,225
Number of Sequences: 219361
Number of extensions: 1720310
Number of successful extensions: 3534
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3534
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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