| Clone Name | bags17p14 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT016439.1| Zea mays clone Contig272 mRNA sequence Length = 1566 Score = 101 bits (51), Expect = 2e-19 Identities = 65/70 (92%) Strand = Plus / Plus Query: 1 tatgctgacttttgttttaagaccttnggcgatcgtgtaaagcactggtttacattcaat 60 ||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 395 tatgctgacttctgttttaagacctacggcgatcgcgtaaagcactggtttacattcaat 454 Query: 61 gaaccaagga 70 || ||||||| Sbjct: 455 gagccaagga 464
>gb|AY109400.1| Zea mays CL1052_1 mRNA sequence Length = 2031 Score = 101 bits (51), Expect = 2e-19 Identities = 65/70 (92%) Strand = Plus / Plus Query: 1 tatgctgacttttgttttaagaccttnggcgatcgtgtaaagcactggtttacattcaat 60 ||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 392 tatgctgacttctgttttaagacctacggcgatcgcgtaaagcactggtttacattcaat 451 Query: 61 gaaccaagga 70 || ||||||| Sbjct: 452 gagccaagga 461
>ref|XM_469436.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1849 Score = 73.8 bits (37), Expect = 5e-11 Identities = 57/64 (89%) Strand = Plus / Plus Query: 7 gacttttgttttaagaccttnggcgatcgtgtaaagcactggtttacattcaatgaacca 66 ||||| ||||| |||||||| ||| ||||||| ||||||||||||||||| ||||| ||| Sbjct: 648 gacttctgtttcaagacctttggcaatcgtgtcaagcactggtttacatttaatgagcca 707 Query: 67 agga 70 |||| Sbjct: 708 agga 711
>gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C08 map R2847, complete sequence Length = 100918 Score = 73.8 bits (37), Expect = 5e-11 Identities = 57/64 (89%) Strand = Plus / Minus Query: 7 gacttttgttttaagaccttnggcgatcgtgtaaagcactggtttacattcaatgaacca 66 ||||| ||||| |||||||| ||| ||||||| ||||||||||||||||| ||||| ||| Sbjct: 83139 gacttctgtttcaagacctttggcaatcgtgtcaagcactggtttacatttaatgagcca 83080 Query: 67 agga 70 |||| Sbjct: 83079 agga 83076
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 73.8 bits (37), Expect = 5e-11 Identities = 57/64 (89%) Strand = Plus / Minus Query: 7 gacttttgttttaagaccttnggcgatcgtgtaaagcactggtttacattcaatgaacca 66 ||||| ||||| |||||||| ||| ||||||| ||||||||||||||||| ||||| ||| Sbjct: 27947411 gacttctgtttcaagacctttggcaatcgtgtcaagcactggtttacatttaatgagcca 27947352 Query: 67 agga 70 |||| Sbjct: 27947351 agga 27947348
>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete sequence Length = 133889 Score = 73.8 bits (37), Expect = 5e-11 Identities = 57/64 (89%) Strand = Plus / Plus Query: 7 gacttttgttttaagaccttnggcgatcgtgtaaagcactggtttacattcaatgaacca 66 ||||| ||||| |||||||| ||| ||||||| ||||||||||||||||| ||||| ||| Sbjct: 77615 gacttctgtttcaagacctttggcaatcgtgtcaagcactggtttacatttaatgagcca 77674 Query: 67 agga 70 |||| Sbjct: 77675 agga 77678
>gb|U28047.2|OSU28047 Oryza sativa beta-glucosidase mRNA, complete cds Length = 1909 Score = 73.8 bits (37), Expect = 5e-11 Identities = 57/64 (89%) Strand = Plus / Plus Query: 7 gacttttgttttaagaccttnggcgatcgtgtaaagcactggtttacattcaatgaacca 66 ||||| ||||| |||||||| ||| ||||||| ||||||||||||||||| ||||| ||| Sbjct: 659 gacttctgtttcaagacctttggcaatcgtgtcaagcactggtttacatttaatgagcca 718 Query: 67 agga 70 |||| Sbjct: 719 agga 722
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 73.8 bits (37), Expect = 5e-11 Identities = 57/64 (89%) Strand = Plus / Minus Query: 7 gacttttgttttaagaccttnggcgatcgtgtaaagcactggtttacattcaatgaacca 66 ||||| ||||| |||||||| ||| ||||||| ||||||||||||||||| ||||| ||| Sbjct: 28038735 gacttctgtttcaagacctttggcaatcgtgtcaagcactggtttacatttaatgagcca 28038676 Query: 67 agga 70 |||| Sbjct: 28038675 agga 28038672
>dbj|AK105026.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-H02, full insert sequence Length = 1846 Score = 73.8 bits (37), Expect = 5e-11 Identities = 57/64 (89%) Strand = Plus / Plus Query: 7 gacttttgttttaagaccttnggcgatcgtgtaaagcactggtttacattcaatgaacca 66 ||||| ||||| |||||||| ||| ||||||| ||||||||||||||||| ||||| ||| Sbjct: 651 gacttctgtttcaagacctttggcaatcgtgtcaagcactggtttacatttaatgagcca 710 Query: 67 agga 70 |||| Sbjct: 711 agga 714
>dbj|AK103027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117C01, full insert sequence Length = 1857 Score = 73.8 bits (37), Expect = 5e-11 Identities = 57/64 (89%) Strand = Plus / Plus Query: 7 gacttttgttttaagaccttnggcgatcgtgtaaagcactggtttacattcaatgaacca 66 ||||| ||||| |||||||| ||| ||||||| ||||||||||||||||| ||||| ||| Sbjct: 650 gacttctgtttcaagacctttggcaatcgtgtcaagcactggtttacatttaatgagcca 709 Query: 67 agga 70 |||| Sbjct: 710 agga 713
>dbj|AK100165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023021K07, full insert sequence Length = 1894 Score = 73.8 bits (37), Expect = 5e-11 Identities = 57/64 (89%) Strand = Plus / Plus Query: 7 gacttttgttttaagaccttnggcgatcgtgtaaagcactggtttacattcaatgaacca 66 ||||| ||||| |||||||| ||| ||||||| ||||||||||||||||| ||||| ||| Sbjct: 654 gacttctgtttcaagacctttggcaatcgtgtcaagcactggtttacatttaatgagcca 713 Query: 67 agga 70 |||| Sbjct: 714 agga 717
>dbj|AK059920.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-G08, full insert sequence Length = 1302 Score = 73.8 bits (37), Expect = 5e-11 Identities = 57/64 (89%) Strand = Plus / Plus Query: 7 gacttttgttttaagaccttnggcgatcgtgtaaagcactggtttacattcaatgaacca 66 ||||| ||||| |||||||| ||| ||||||| ||||||||||||||||| ||||| ||| Sbjct: 95 gacttctgtttcaagacctttggcaatcgtgtcaagcactggtttacatttaatgagcca 154 Query: 67 agga 70 |||| Sbjct: 155 agga 158
>ref|XM_469437.1| Oryza sativa (japonica cultivar-group), mRNA Length = 806 Score = 63.9 bits (32), Expect = 5e-08 Identities = 49/55 (89%) Strand = Plus / Plus Query: 7 gacttttgttttaagaccttnggcgatcgtgtaaagcactggtttacattcaatg 61 ||||| ||||| |||||||| ||| ||||||| ||||||||||||||||| |||| Sbjct: 752 gacttctgtttcaagacctttggcaatcgtgtcaagcactggtttacatttaatg 806
>gb|DQ289595.1| Oncidium Gower Ramsey beta-mannosidase 1 mRNA, complete cds Length = 1700 Score = 44.1 bits (22), Expect = 0.044 Identities = 25/26 (96%) Strand = Plus / Plus Query: 44 actggtttacattcaatgaaccaagg 69 ||||||||||||| |||||||||||| Sbjct: 626 actggtttacatttaatgaaccaagg 651
>gb|DQ289594.1| Oncidium Gower Ramsey beta-mannosidase 2 mRNA, complete cds Length = 1669 Score = 44.1 bits (22), Expect = 0.044 Identities = 25/26 (96%) Strand = Plus / Plus Query: 44 actggtttacattcaatgaaccaagg 69 ||||||||||||| |||||||||||| Sbjct: 595 actggtttacatttaatgaaccaagg 620
>gb|DQ289593.1| Oncidium Gower Ramsey beta-mannosidase 3 mRNA, complete cds Length = 1639 Score = 44.1 bits (22), Expect = 0.044 Identities = 25/26 (96%) Strand = Plus / Plus Query: 44 actggtttacattcaatgaaccaagg 69 ||||||||||||| |||||||||||| Sbjct: 565 actggtttacatttaatgaaccaagg 590
>gb|AC092615.3| Homo sapiens BAC clone RP11-204D19 from 2, complete sequence Length = 180346 Score = 42.1 bits (21), Expect = 0.18 Identities = 21/21 (100%) Strand = Plus / Minus Query: 4 gctgacttttgttttaagacc 24 ||||||||||||||||||||| Sbjct: 103121 gctgacttttgttttaagacc 103101
>emb|AL392086.14| Human DNA sequence from clone RP11-799O21 on chromosome 10 Contains the 3' end of a novel gene and a novel gene, complete sequence Length = 220225 Score = 40.1 bits (20), Expect = 0.69 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ctggtttacattcaatgaac 64 |||||||||||||||||||| Sbjct: 27697 ctggtttacattcaatgaac 27678
>ref|NM_014809.2| Homo sapiens KIAA0319 (KIAA0319), mRNA Length = 6801 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 ctggtttacattcaatgaa 63 ||||||||||||||||||| Sbjct: 6253 ctggtttacattcaatgaa 6271
>ref|XM_655618.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3106.2), mRNA Length = 5040 Score = 38.2 bits (19), Expect = 2.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 43 cactggtttacattcaatgaacc 65 |||||| |||||||||||||||| Sbjct: 2764 cactggattacattcaatgaacc 2786
>gb|AC151527.13| Medicago truncatula clone mth2-135i19, complete sequence Length = 132470 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 taaagcactggtttacatt 56 ||||||||||||||||||| Sbjct: 83063 taaagcactggtttacatt 83045
>gb|U26025.2| Prunus serotina amygdalin hydrolase isoform AH I precursor (AH1) mRNA, complete cds Length = 1915 Score = 38.2 bits (19), Expect = 2.7 Identities = 33/38 (86%) Strand = Plus / Plus Query: 11 tttgttttaagaccttnggcgatcgtgtaaagcactgg 48 |||||||||||| || |||||||| ||||| |||||| Sbjct: 604 tttgttttaagaaatttggcgatcgagtaaaacactgg 641
>emb|AL031230.1|HS73M23 Human DNA sequence from clone RP1-73M23 on chromosome 6p22.2-22.3 Contains the 5' part of the GPLD1 gene for glycosylphosphatidylinositol specific phospholipase D1, the SSADH gene for aldehyde dehydrogenase 5 family member A, the 3' part of the KIAA0319 gene and a CpG island, complete sequence Length = 126990 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 ctggtttacattcaatgaa 63 ||||||||||||||||||| Sbjct: 88305 ctggtttacattcaatgaa 88287
>emb|CR942205.4| Human DNA sequence from clone RP11-948M1 on chromosome 6, complete sequence Length = 176819 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 ctggtttacattcaatgaa 63 ||||||||||||||||||| Sbjct: 143991 ctggtttacattcaatgaa 144009
>gb|AC154328.2| Mus musculus BAC clone RP23-298N23 from chromosome 13, complete sequence Length = 182025 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 acttttgttttaagacctt 26 ||||||||||||||||||| Sbjct: 147237 acttttgttttaagacctt 147255
>emb|AL935256.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 5/11 Length = 302050 Score = 38.2 bits (19), Expect = 2.7 Identities = 25/27 (92%) Strand = Plus / Plus Query: 37 gtaaagcactggtttacattcaatgaa 63 |||||||||||| |||| ||||||||| Sbjct: 31900 gtaaagcactggattaccttcaatgaa 31926
>emb|CR925830.3| Human DNA sequence from clone RP11-195J19 on chromosome 6, complete sequence Length = 167847 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 ctggtttacattcaatgaa 63 ||||||||||||||||||| Sbjct: 150363 ctggtttacattcaatgaa 150381
>gb|AY056828.1| Oryza sativa beta-glucosidase isozyme 2 precursor, mRNA, complete cds Length = 1797 Score = 38.2 bits (19), Expect = 2.7 Identities = 31/35 (88%) Strand = Plus / Plus Query: 28 ggcgatcgtgtaaagcactggtttacattcaatga 62 ||||| ||||| ||| ||||||||||||| ||||| Sbjct: 562 ggcgaccgtgtcaagtactggtttacatttaatga 596
>gb|AC099687.5| Homo sapiens chromosome 11, clone CTD-2507G9, complete sequence Length = 167577 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 49 tttacattcaatgaaccaa 67 ||||||||||||||||||| Sbjct: 116893 tttacattcaatgaaccaa 116911
>gb|AC109604.8| Mus musculus strain 129Sv/CJ7 clone rp22-298k22, complete sequence Length = 139770 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 acttttgttttaagacctt 26 ||||||||||||||||||| Sbjct: 41202 acttttgttttaagacctt 41184
>gb|AF414606.1|AF414606 Prunus serotina amygdalin hydrolase isoform AH I precursor (AH1) gene, partial cds Length = 3373 Score = 38.2 bits (19), Expect = 2.7 Identities = 33/38 (86%) Strand = Plus / Plus Query: 11 tttgttttaagaccttnggcgatcgtgtaaagcactgg 48 |||||||||||| || |||||||| ||||| |||||| Sbjct: 1591 tttgttttaagaaatttggcgatcgagtaaaacactgg 1628
>dbj|AB019228.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCK7 Length = 87090 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 tatgctgacttttgtttta 19 ||||||||||||||||||| Sbjct: 17998 tatgctgacttttgtttta 18016
>dbj|AB006707.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MYC6 Length = 82315 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 52 acattcaatgaaccaagga 70 ||||||||||||||||||| Sbjct: 26650 acattcaatgaaccaagga 26632
>dbj|AB002317.1| Homo sapiens mRNA for KIAA0319 gene, partial cds Length = 6791 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 ctggtttacattcaatgaa 63 ||||||||||||||||||| Sbjct: 6244 ctggtttacattcaatgaa 6262
>gb|AC153866.6| Mus musculus 10 BAC RP23-350O24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 184984 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 acttttgttttaagacctt 26 ||||||||||||||||||| Sbjct: 150197 acttttgttttaagacctt 150215
>gb|AF086065.1|HUMYZ12H03 Homo sapiens full length insert cDNA clone YZ12H03 Length = 477 Score = 38.2 bits (19), Expect = 2.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 ctggtttacattcaatgaa 63 ||||||||||||||||||| Sbjct: 175 ctggtttacattcaatgaa 193 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 715,499 Number of Sequences: 3902068 Number of extensions: 715499 Number of successful extensions: 48050 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47976 Number of HSP's gapped (non-prelim): 74 length of query: 70 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 49 effective length of database: 17,151,101,840 effective search space: 840403990160 effective search space used: 840403990160 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)