ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags17p08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK072665.1| Oryza sativa (japonica cultivar-group) cDNA clon... 272 1e-69
2gb|AY103760.1| Zea mays PCO110275 mRNA sequence 151 3e-33
3gb|AC109832.2| Oryza sativa (japonica cultivar-group) chromosome... 139 1e-29
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 139 1e-29
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 139 1e-29
6dbj|AK111001.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 2e-25
7gb|AF114171.1| Sorghum bicolor BAC clone 25.M18, complete sequence 82 3e-12
8dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-12
9gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 82 3e-12
10emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC OJ1536... 82 3e-12
11emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510... 82 3e-12
12gb|BT024176.1| Zea mays clone EL01N0421E04 mRNA sequence 50 0.009
13gb|BC100056.1| Danio rerio zgc:112414, mRNA (cDNA clone MGC:1124... 48 0.035
14ref|NM_001033099.1| Danio rerio zgc:112414 (zgc:112414), mRNA 48 0.035
15gb|AC149136.3| Xenopus tropicalis clone CH216-164F21, complete s... 46 0.14
16emb|AL353674.17| Human DNA sequence from clone RP11-162O6 on chr... 42 2.2
17gb|BC037274.1| Homo sapiens cDNA clone IMAGE:4827820, containing... 42 2.2
18gb|AC104002.5| Homo sapiens, clone RP11-100M12, complete sequence 42 2.2
19gb|AC021979.6| Homo sapiens chromosome 15, clone RP11-30G8, comp... 42 2.2
20ref|XM_930953.1| PREDICTED: Homo sapiens similar to RAN-binding ... 42 2.2
21gb|AC010837.2| Homo sapiens chromosome 18, clone RP11-307E5, com... 42 2.2
22gb|AC112246.4| Homo sapiens BAC clone RP11-606M12 from 2, comple... 42 2.2
23emb|X57731.2|PSGVPA Pseudoanabaene sp. partial ORF1, gvpA gene, ... 42 2.2
24ref|NM_125512.2| Arabidopsis thaliana nucleic acid binding / zin... 40 8.6
25gb|AF061282.1| Sorghum bicolor 22 kDa kafirin cluster 40 8.6
26gb|BC076642.1| Xenopus laevis phosphoserine phosphatase, mRNA (c... 40 8.6
27ref|XM_457358.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 8.6
28ref|XM_850744.1| PREDICTED: Canis familiaris similar to phosphos... 40 8.6
29ref|XM_546901.2| PREDICTED: Canis familiaris similar to phosphos... 40 8.6
30ref|XM_843195.1| PREDICTED: Canis familiaris similar to phosphos... 40 8.6
31gb|AC013470.10| Homo sapiens BAC clone RP11-472F21 from 7, compl... 40 8.6
32gb|AC146192.2| Pan troglodytes BAC clone RP43-35D13 from 7, comp... 40 8.6
33gb|AC145023.4| Medicago truncatula clone mth2-30j24, complete se... 40 8.6
34gb|AC154352.2| Mus musculus BAC clone RP24-545J11 from chromosom... 40 8.6
35emb|BX537160.6| Human DNA sequence from clone RP11-1023P23 on ch... 40 8.6
36gb|AC107608.6| Rattus norvegicus 1 BAC CH230-204P6 (Children's H... 40 8.6
37emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS... 40 8.6
38gb|AF458149.1|AF458149S1 Homo sapiens taste-specific G-protein c... 40 8.6
39ref|NM_152232.1| Homo sapiens taste receptor, type 1, member 2 (... 40 8.6
40dbj|AK016373.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 8.6
41tpg|BK000151.1| TPA: TPA_exp: Homo sapiens G-protein coupled rec... 40 8.6
42dbj|AK006991.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 8.6
43gb|AC147274.3| Pan troglodytes BAC clone RP43-113D16 from chromo... 40 8.6
44gb|AC092623.2| Homo sapiens BAC clone RP11-260E12 from 2, comple... 40 8.6
45dbj|AB006696.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 8.6
46gb|AC123920.4| Mus musculus BAC clone RP24-130L14 from 13, compl... 40 8.6
47emb|BX248089.5| Zebrafish DNA sequence from clone DKEY-21K10 in ... 40 8.6
48gb|AC139761.4| Mus musculus BAC clone RP23-223C23 from 6, comple... 40 8.6 
>dbj|AK072665.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133N19, full
           insert sequence
          Length = 1283

 Score =  272 bits (137), Expect = 1e-69
 Identities = 254/293 (86%)
 Strand = Plus / Plus

                                                                       
Query: 316 gccaaccgccagccttccaaagaggttcttgagacatggcgcagtgccaacgcggtgtgc 375
           ||||| |||||||||||||||| |||||||||||||||| ||| |||| | || ||||| 
Sbjct: 346 gccaatcgccagccttccaaaggggttcttgagacatggtgcaatgccgatgcagtgtgt 405

                                                                       
Query: 376 tttgatgtggatagcactgtatgcttggatgagggtatagatgagcttgctgatttctgt 435
           |||||||| |||||||| || ||||||||||||||||| ||||| || ||||||||||||
Sbjct: 406 tttgatgttgatagcacggtctgcttggatgagggtattgatgaactcgctgatttctgt 465

                                                                       
Query: 436 ggggctgggcaggcagttgctgagtggacgacgaaggcaatgacagggaccgttccattt 495
           ||||||||| |||| ||||||||||||||  | |||||||||||||| || |||||||||
Sbjct: 466 ggggctgggaaggctgttgctgagtggactgcaaaggcaatgacaggaactgttccattt 525

                                                                       
Query: 496 gaagaggctcttgctgcccggatttcgttaatcaagccatctctgtcccaagtccaggac 555
           || ||||| || |||||| || | |||||||| ||||||| ||||||||||||  | |||
Sbjct: 526 gaggaggcactagctgccaggctatcgttaattaagccatatctgtcccaagttgatgac 585

                                                                
Query: 556 tgcttggagaagaggccacccaggatttctcctggaatcgctgatttgattaa 608
           || || | ||||||||| || ||||||||||||||||| ||||| ||||||||
Sbjct: 586 tgtttagtgaagaggcctccaaggatttctcctggaattgctgacttgattaa 638
to top
>gb|AY103760.1| Zea mays PCO110275 mRNA sequence
          Length = 2705

 Score =  151 bits (76), Expect = 3e-33
 Identities = 175/208 (84%)
 Strand = Plus / Plus

                                                                       
Query: 401 tggatgagggtatagatgagcttgctgatttctgtggggctgggcaggcagttgctgagt 460
           |||| ||||| || || ||||||||||||||||| ||||| ||| | || |||||||| |
Sbjct: 356 tggacgagggcattgacgagcttgctgatttctgcggggcggggaaagctgttgctgaat 415

                                                                       
Query: 461 ggacgacgaaggcaatgacagggaccgttccatttgaagaggctcttgctgcccggattt 520
           ||||  | ||||| ||||||||||| ||||| ||||| ||||| || || ||| || | |
Sbjct: 416 ggactgcaaaggccatgacagggactgttccgtttgaggaggcgctggcagccaggctgt 475

                                                                       
Query: 521 cgttaatcaagccatctctgtcccaagtccaggactgcttggagaagaggccacccagga 580
           | ||||||||||||||||| ||||| ||  |||| ||| |||||||||||||||| ||||
Sbjct: 476 ctttaatcaagccatctctctcccaggtggaggagtgcctggagaagaggccaccaagga 535

                                       
Query: 581 tttctcctggaatcgctgatttgattaa 608
           ||||||||||||| ||||||||| ||||
Sbjct: 536 tttctcctggaatggctgatttggttaa 563
to top
>gb|AC109832.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone P0038B07,
              complete sequence
          Length = 149697

 Score =  139 bits (70), Expect = 1e-29
 Identities = 112/126 (88%)
 Strand = Plus / Minus

                                                                          
Query: 339    ggttcttgagacatggcgcagtgccaacgcggtgtgctttgatgtggatagcactgtatg 398
              |||||||||||||||| ||| |||| | || ||||| |||||||| |||||||| || ||
Sbjct: 138830 ggttcttgagacatggtgcaatgccgatgcagtgtgttttgatgttgatagcacggtctg 138771

                                                                          
Query: 399    cttggatgagggtatagatgagcttgctgatttctgtggggctgggcaggcagttgctga 458
              ||||||||||||||| ||||| || ||||||||||||||||||||| |||| ||||||||
Sbjct: 138770 cttggatgagggtattgatgaactcgctgatttctgtggggctgggaaggctgttgctga 138711

                    
Query: 459    gtggac 464
              ||||||
Sbjct: 138710 gtggac 138705



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 68/78 (87%)
 Strand = Plus / Minus

                                                                          
Query: 471    ggcaatgacagggaccgttccatttgaagaggctcttgctgcccggatttcgttaatcaa 530
              |||||||||||| || ||||||||||| ||||| || |||||| || | |||||||| ||
Sbjct: 138605 ggcaatgacaggaactgttccatttgaggaggcactagctgccaggctatcgttaattaa 138546

                                
Query: 531    gccatctctgtcccaagt 548
              ||||| ||||||||||||
Sbjct: 138545 gccatatctgtcccaagt 138528



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                               
Query: 576    caggatttctcctggaatcgctgatttgattaa 608
              |||||||||||||||||| ||||| ||||||||
Sbjct: 138053 caggatttctcctggaattgctgacttgattaa 138021
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  139 bits (70), Expect = 1e-29
 Identities = 112/126 (88%)
 Strand = Plus / Minus

                                                                            
Query: 339      ggttcttgagacatggcgcagtgccaacgcggtgtgctttgatgtggatagcactgtatg 398
                |||||||||||||||| ||| |||| | || ||||| |||||||| |||||||| || ||
Sbjct: 23802792 ggttcttgagacatggtgcaatgccgatgcagtgtgttttgatgttgatagcacggtctg 23802733

                                                                            
Query: 399      cttggatgagggtatagatgagcttgctgatttctgtggggctgggcaggcagttgctga 458
                ||||||||||||||| ||||| || ||||||||||||||||||||| |||| ||||||||
Sbjct: 23802732 cttggatgagggtattgatgaactcgctgatttctgtggggctgggaaggctgttgctga 23802673

                      
Query: 459      gtggac 464
                ||||||
Sbjct: 23802672 gtggac 23802667



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 68/78 (87%)
 Strand = Plus / Minus

                                                                            
Query: 471      ggcaatgacagggaccgttccatttgaagaggctcttgctgcccggatttcgttaatcaa 530
                |||||||||||| || ||||||||||| ||||| || |||||| || | |||||||| ||
Sbjct: 23802567 ggcaatgacaggaactgttccatttgaggaggcactagctgccaggctatcgttaattaa 23802508

                                  
Query: 531      gccatctctgtcccaagt 548
                ||||| ||||||||||||
Sbjct: 23802507 gccatatctgtcccaagt 23802490



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 576      caggatttctcctggaatcgctgatttgattaa 608
                |||||||||||||||||| ||||| ||||||||
Sbjct: 23802015 caggatttctcctggaattgctgacttgattaa 23801983
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  139 bits (70), Expect = 1e-29
 Identities = 112/126 (88%)
 Strand = Plus / Minus

                                                                            
Query: 339      ggttcttgagacatggcgcagtgccaacgcggtgtgctttgatgtggatagcactgtatg 398
                |||||||||||||||| ||| |||| | || ||||| |||||||| |||||||| || ||
Sbjct: 24114461 ggttcttgagacatggtgcaatgccgatgcagtgtgttttgatgttgatagcacggtctg 24114402

                                                                            
Query: 399      cttggatgagggtatagatgagcttgctgatttctgtggggctgggcaggcagttgctga 458
                ||||||||||||||| ||||| || ||||||||||||||||||||| |||| ||||||||
Sbjct: 24114401 cttggatgagggtattgatgaactcgctgatttctgtggggctgggaaggctgttgctga 24114342

                      
Query: 459      gtggac 464
                ||||||
Sbjct: 24114341 gtggac 24114336



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 68/78 (87%)
 Strand = Plus / Minus

                                                                            
Query: 471      ggcaatgacagggaccgttccatttgaagaggctcttgctgcccggatttcgttaatcaa 530
                |||||||||||| || ||||||||||| ||||| || |||||| || | |||||||| ||
Sbjct: 24114236 ggcaatgacaggaactgttccatttgaggaggcactagctgccaggctatcgttaattaa 24114177

                                  
Query: 531      gccatctctgtcccaagt 548
                ||||| ||||||||||||
Sbjct: 24114176 gccatatctgtcccaagt 24114159



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 576      caggatttctcctggaatcgctgatttgattaa 608
                |||||||||||||||||| ||||| ||||||||
Sbjct: 24113684 caggatttctcctggaattgctgacttgattaa 24113652
to top
>dbj|AK111001.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-E12, full
           insert sequence
          Length = 1353

 Score =  125 bits (63), Expect = 2e-25
 Identities = 192/235 (81%)
 Strand = Plus / Plus

                                                                       
Query: 365 acgcggtgtgctttgatgtggatagcactgtatgcttggatgagggtatagatgagcttg 424
           ||||||||||||| ||||| || ||||| || |||||||| |||||||| |||||||| |
Sbjct: 363 acgcggtgtgcttcgatgttgacagcacggtctgcttggacgagggtatcgatgagctcg 422

                                                                       
Query: 425 ctgatttctgtggggctgggcaggcagttgctgagtggacgacgaaggcaatgacaggga 484
           | || ||||||||||| || || || |||||||| |||||| | ||||| ||||| ||| 
Sbjct: 423 cggacttctgtggggcaggccaagcggttgctgaatggacggctaaggcgatgactgggt 482

                                                                       
Query: 485 ccgttccatttgaagaggctcttgctgcccggatttcgttaatcaagccatctctgtccc 544
           | ||||| |||||| ||||  | ||||| ||| | |||||  ||||||||||| ||   |
Sbjct: 483 cagttccgtttgaaaaggcattagctgctcggctatcgttgttcaagccatctttggggc 542

                                                                  
Query: 545 aagtccaggactgcttggagaagaggccacccaggatttctcctggaatcgctga 599
           ||||  |||||||| |||||||| ||||||| || || ||||||||||| |||||
Sbjct: 543 aagttgaggactgcatggagaagcggccaccaagaatatctcctggaattgctga 597
to top
>gb|AF114171.1| Sorghum bicolor BAC clone 25.M18, complete sequence
          Length = 183990

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                          
Query: 475    atgacagggaccgttccatttgaagaggctcttgctgcccggatttcgttaatcaagcca 534
              ||||||||||| ||||||||||| ||||| || || ||| || | || ||||||||||||
Sbjct: 150061 atgacagggactgttccatttgaggaggcgctggcagccaggctgtctttaatcaagcca 150002

                                                       
Query: 535    tctctgtcccaagtccaggactgcttggagaagaggccacc 575
              ||||| ||||| ||  |||| ||| ||||||||||||||||
Sbjct: 150001 tctctctcccaggtggaggaatgcctggagaagaggccacc 149961



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                          
Query: 401    tggatgagggtatagatgagcttgctgatttctgtggggctgggcaggcagttgctgagt 460
              |||||||||| || || ||||||||||||||||||||||| ||| | || |||||||| |
Sbjct: 150215 tggatgagggcattgacgagcttgctgatttctgtggggcagggaaagctgttgctgaat 150156

                  
Query: 461    ggac 464
              ||||
Sbjct: 150155 ggac 150152



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 576    caggatttctcctggaatcgctgattt 602
              |||||||||||||||||| ||||||||
Sbjct: 149453 caggatttctcctggaatggctgattt 149427
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                            
Query: 365      acgcggtgtgctttgatgtggatagcactgtatgcttggatgagggtatagatgagcttg 424
                ||||||||||||| ||||| || ||||| || |||||||| |||||||| |||||||| |
Sbjct: 19190923 acgcggtgtgcttcgatgttgacagcacggtctgcttggacgagggtatcgatgagctcg 19190864

                                                         
Query: 425      ctgatttctgtggggctgggcaggcagttgctgagtggacg 465
                | || ||||||||||| || || || |||||||| ||||||
Sbjct: 19190863 cggacttctgtggggcaggccaagcggttgctgaatggacg 19190823
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                            
Query: 365      acgcggtgtgctttgatgtggatagcactgtatgcttggatgagggtatagatgagcttg 424
                ||||||||||||| ||||| || ||||| || |||||||| |||||||| |||||||| |
Sbjct: 19117150 acgcggtgtgcttcgatgttgacagcacggtctgcttggacgagggtatcgatgagctcg 19117091

                                                         
Query: 425      ctgatttctgtggggctgggcaggcagttgctgagtggacg 465
                | || ||||||||||| || || || |||||||| ||||||
Sbjct: 19117090 cggacttctgtggggcaggccaagcggttgctgaatggacg 19117050
to top
>emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC OJ1536_D01 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 127026

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 86/101 (85%)
 Strand = Plus / Plus

                                                                         
Query: 365   acgcggtgtgctttgatgtggatagcactgtatgcttggatgagggtatagatgagcttg 424
             ||||||||||||| ||||| || ||||| || |||||||| |||||||| |||||||| |
Sbjct: 35058 acgcggtgtgcttcgatgttgacagcacggtctgcttggacgagggtatcgatgagctcg 35117

                                                      
Query: 425   ctgatttctgtggggctgggcaggcagttgctgagtggacg 465
             | || ||||||||||| || || || |||||||| ||||||
Sbjct: 35118 cggacttctgtggggcaggccaagcggttgctgaatggacg 35158
to top
>emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510_A06 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 136155

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                         
Query: 365   acgcggtgtgctttgatgtggatagcactgtatgcttggatgagggtatagatgagcttg 424
             ||||||||||||| ||||| || ||||| || |||||||| |||||||| |||||||| |
Sbjct: 24253 acgcggtgtgcttcgatgttgacagcacggtctgcttggacgagggtatcgatgagctcg 24194

                                                      
Query: 425   ctgatttctgtggggctgggcaggcagttgctgagtggacg 465
             | || ||||||||||| || || || |||||||| ||||||
Sbjct: 24193 cggacttctgtggggcaggccaagcggttgctgaatggacg 24153
to top
>gb|BT024176.1| Zea mays clone EL01N0421E04 mRNA sequence
          Length = 2068

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 120/149 (80%), Gaps = 2/149 (1%)
 Strand = Plus / Plus

                                                                        
Query: 428  atttctgtggggctgggcag-gcagttgctgagtggacgacgaaggcaatgacagggacc 486
            ||||||| ||||||||| |  ||||||||||| |||||  | ||||| |||| |||||| 
Sbjct: 943  atttctgcggggctggggaaagcagttgctgaatggactgcaaaggccatgatagggact 1002

                                                                        
Query: 487  gttccatttgaagaggctcttgctgcccggatttcgttaatcaagccatctctgtcccaa 546
            ||||| || || ||||| || || ||| || | || ||||||||||||||||| ||||| 
Sbjct: 1003 gttccgtt-gaggaggcgctggcagccaggctgtctttaatcaagccatctctctcccag 1061

                                         
Query: 547  gtccaggactgcttggagaagaggccacc 575
            ||  | || |||  |||||||||||||||
Sbjct: 1062 gtggaagagtgcccggagaagaggccacc 1090
to top
>gb|BC100056.1| Danio rerio zgc:112414, mRNA (cDNA clone MGC:112414 IMAGE:7401748),
           complete cds
          Length = 1139

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 365 acgcggtgtgctttgatgtggatagcac 392
           |||||||||||||||||||||| |||||
Sbjct: 95  acgcggtgtgctttgatgtggacagcac 122
to top
>ref|NM_001033099.1| Danio rerio zgc:112414 (zgc:112414), mRNA
          Length = 1139

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 365 acgcggtgtgctttgatgtggatagcac 392
           |||||||||||||||||||||| |||||
Sbjct: 95  acgcggtgtgctttgatgtggacagcac 122
to top
>gb|AC149136.3| Xenopus tropicalis clone CH216-164F21, complete sequence
          Length = 182684

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 568    aggccacccaggatttctcctgg 590
              |||||||||||||||||||||||
Sbjct: 171581 aggccacccaggatttctcctgg 171559
to top
>emb|AL353674.17| Human DNA sequence from clone RP11-162O6 on chromosome 6, complete
             sequence
          Length = 169897

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 403   gatgagggtatagatgagctt 423
             |||||||||||||||||||||
Sbjct: 51152 gatgagggtatagatgagctt 51132
to top
>gb|BC037274.1| Homo sapiens cDNA clone IMAGE:4827820, containing frame-shift
           errors
          Length = 5560

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 155 ctctgtctgtttctccattatcttc 179
           ||||||| |||||||||||||||||
Sbjct: 311 ctctgtcagtttctccattatcttc 287
to top
>gb|AC104002.5| Homo sapiens, clone RP11-100M12, complete sequence
          Length = 169822

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 418   gagcttgctgatttctgtggg 438
             |||||||||||||||||||||
Sbjct: 29433 gagcttgctgatttctgtggg 29453
to top
>gb|AC021979.6| Homo sapiens chromosome 15, clone RP11-30G8, complete sequence
          Length = 190692

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 418    gagcttgctgatttctgtggg 438
              |||||||||||||||||||||
Sbjct: 156156 gagcttgctgatttctgtggg 156176
to top
>ref|XM_930953.1| PREDICTED: Homo sapiens similar to RAN-binding protein 2-like 1
           isoform 2, transcript variant 4 (LOC653086), mRNA
          Length = 7462

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 155 ctctgtctgtttctccattatcttc 179
           ||||||| |||||||||||||||||
Sbjct: 297 ctctgtcagtttctccattatcttc 273
to top
>gb|AC010837.2| Homo sapiens chromosome 18, clone RP11-307E5, complete sequence
          Length = 210074

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 418    gagcttgctgatttctgtggg 438
              |||||||||||||||||||||
Sbjct: 187490 gagcttgctgatttctgtggg 187510
to top
>gb|AC112246.4| Homo sapiens BAC clone RP11-606M12 from 2, complete sequence
          Length = 72179

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 155   ctctgtctgtttctccattatcttc 179
             ||||||| |||||||||||||||||
Sbjct: 57796 ctctgtcagtttctccattatcttc 57820
to top
>emb|X57731.2|PSGVPA Pseudoanabaene sp. partial ORF1, gvpA gene, gvpN gene, gvpJ gene
          Length = 2885

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 22  ccttgcttctgcaaatccttg 42
           |||||||||||||||||||||
Sbjct: 513 ccttgcttctgcaaatccttg 493
to top
>ref|NM_125512.2| Arabidopsis thaliana nucleic acid binding / zinc ion binding
            AT5G61190 mRNA, complete cds
          Length = 3101

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 326  agccttccaaagaggttcttgaga 349
            ||||||||||||||||||| ||||
Sbjct: 1022 agccttccaaagaggttctagaga 1045
to top
>gb|AF061282.1| Sorghum bicolor 22 kDa kafirin cluster
          Length = 162249

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 186   atcaccacagacatcacagttagc 209
             |||||| |||||||||||||||||
Sbjct: 86763 atcacctcagacatcacagttagc 86786
to top
>gb|BC076642.1| Xenopus laevis phosphoserine phosphatase, mRNA (cDNA clone
           MGC:78828 IMAGE:3402680), complete cds
          Length = 1771

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 373 tgctttgatgtggatagcac 392
           ||||||||||||||||||||
Sbjct: 242 tgctttgatgtggatagcac 261
to top
>ref|XM_457358.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0B09592g)
           partial mRNA
          Length = 573

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 303 ttcttcttgtttcgccaacc 322
           ||||||||||||||||||||
Sbjct: 150 ttcttcttgtttcgccaacc 131
to top
>ref|XM_850744.1| PREDICTED: Canis familiaris similar to phosphoserine phosphatase,
           transcript variant 3 (LOC489783), mRNA
          Length = 1069

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 365 acgcggtgtgctttgatgtggatagcac 392
           |||| |||||||||||||| ||||||||
Sbjct: 213 acgcagtgtgctttgatgttgatagcac 240
to top
>ref|XM_546901.2| PREDICTED: Canis familiaris similar to phosphoserine phosphatase,
           transcript variant 1 (LOC489783), mRNA
          Length = 1204

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 365 acgcggtgtgctttgatgtggatagcac 392
           |||| |||||||||||||| ||||||||
Sbjct: 213 acgcagtgtgctttgatgttgatagcac 240
to top
>ref|XM_843195.1| PREDICTED: Canis familiaris similar to phosphoserine phosphatase,
           transcript variant 2 (LOC489783), mRNA
          Length = 1585

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 365 acgcggtgtgctttgatgtggatagcac 392
           |||| |||||||||||||| ||||||||
Sbjct: 594 acgcagtgtgctttgatgttgatagcac 621
to top
>gb|AC013470.10| Homo sapiens BAC clone RP11-472F21 from 7, complete sequence
          Length = 170723

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 422    ttgctgatttctgtggggctgggcaggc 449
              ||||| || |||||||||||||||||||
Sbjct: 170502 ttgctcatatctgtggggctgggcaggc 170475
to top
>gb|AC146192.2| Pan troglodytes BAC clone RP43-35D13 from 7, complete sequence
          Length = 178260

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 422   ttgctgatttctgtggggctgggcaggc 449
             ||||| || |||||||||||||||||||
Sbjct: 19650 ttgctcatatctgtggggctgggcaggc 19623
to top
>gb|AC145023.4| Medicago truncatula clone mth2-30j24, complete sequence
          Length = 90381

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   gtttctccattatcttcagt 182
             ||||||||||||||||||||
Sbjct: 55051 gtttctccattatcttcagt 55070
to top
>gb|AC154352.2| Mus musculus BAC clone RP24-545J11 from chromosome 13, complete
             sequence
          Length = 199388

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 271   gcagcagcaatggaggtcac 290
             ||||||||||||||||||||
Sbjct: 61855 gcagcagcaatggaggtcac 61836
to top
>emb|BX537160.6| Human DNA sequence from clone RP11-1023P23 on chromosome 1 Contains
            the 5' end of the TAS1R2 gene for taste receptor, type 1,
            member 2 and the 3' end of the ALDH4A1 gene for aldehyde
            dehydrogenase 4 family, member A1, complete sequence
          Length = 17606

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 561  ggagaagaggccacccagga 580
            ||||||||||||||||||||
Sbjct: 4891 ggagaagaggccacccagga 4910
to top
>gb|AC107608.6| Rattus norvegicus 1 BAC CH230-204P6 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 225030

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 272    cagcagcaatggaggtcacc 291
              ||||||||||||||||||||
Sbjct: 168015 cagcagcaatggaggtcacc 167996
to top
>emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS767 of Debaryomyces
              hansenii
          Length = 1349926

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 303    ttcttcttgtttcgccaacc 322
              ||||||||||||||||||||
Sbjct: 741497 ttcttcttgtttcgccaacc 741478
to top
>gb|AF458149.1|AF458149S1 Homo sapiens taste-specific G-protein coupled receptor T1R2
           (TAS1R2) gene, exon 1
          Length = 185

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 561 ggagaagaggccacccagga 580
           ||||||||||||||||||||
Sbjct: 121 ggagaagaggccacccagga 102
to top
>ref|NM_152232.1| Homo sapiens taste receptor, type 1, member 2 (TAS1R2), mRNA
          Length = 2521

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 561 ggagaagaggccacccagga 580
           ||||||||||||||||||||
Sbjct: 121 ggagaagaggccacccagga 102
to top
>dbj|AK016373.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930589D02 product:unclassifiable, full
           insert sequence
          Length = 405

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 gcagcagcaatggaggtcac 290
           ||||||||||||||||||||
Sbjct: 140 gcagcagcaatggaggtcac 159
to top
>tpg|BK000151.1| TPA: TPA_exp: Homo sapiens G-protein coupled receptor (TAS1R2)
           mRNA, complete cds
          Length = 2520

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 561 ggagaagaggccacccagga 580
           ||||||||||||||||||||
Sbjct: 120 ggagaagaggccacccagga 101
to top
>dbj|AK006991.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:1700084F23 product:unclassifiable, full
           insert sequence
          Length = 1045

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 gcagcagcaatggaggtcac 290
           ||||||||||||||||||||
Sbjct: 169 gcagcagcaatggaggtcac 188
to top
>gb|AC147274.3| Pan troglodytes BAC clone RP43-113D16 from chromosome 7, complete
             sequence
          Length = 168606

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 422   ttgctgatttctgtggggctgggcaggc 449
             ||||| || |||||||||||||||||||
Sbjct: 25744 ttgctcatatctgtggggctgggcaggc 25771
to top
>gb|AC092623.2| Homo sapiens BAC clone RP11-260E12 from 2, complete sequence
          Length = 172344

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 435   tggggctgggcaggcagttgctga 458
             |||||||||||||||||| |||||
Sbjct: 50473 tggggctgggcaggcagtagctga 50450
to top
>dbj|AB006696.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAF19
          Length = 78379

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 326   agccttccaaagaggttcttgaga 349
             ||||||||||||||||||| ||||
Sbjct: 65838 agccttccaaagaggttctagaga 65861
to top
>gb|AC123920.4| Mus musculus BAC clone RP24-130L14 from 13, complete sequence
          Length = 170268

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 271    gcagcagcaatggaggtcac 290
              ||||||||||||||||||||
Sbjct: 150970 gcagcagcaatggaggtcac 150951
to top
>emb|BX248089.5| Zebrafish DNA sequence from clone DKEY-21K10 in linkage group 20,
             complete sequence
          Length = 247834

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                         
Query: 584   ctcctggaatc-gctgatttgattaaaa 610
             ||||||||||| ||||||||||||||||
Sbjct: 85855 ctcctggaatcagctgatttgattaaaa 85828
to top
>gb|AC139761.4| Mus musculus BAC clone RP23-223C23 from 6, complete sequence
          Length = 187169

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 267    ggtggcagcagcaatggagg 286
              ||||||||||||||||||||
Sbjct: 176491 ggtggcagcagcaatggagg 176510


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,435,937
Number of Sequences: 3902068
Number of extensions: 5435937
Number of successful extensions: 122565
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 122347
Number of HSP's gapped (non-prelim): 218
length of query: 633
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 610
effective length of database: 17,143,297,704
effective search space: 10457411599440
effective search space used: 10457411599440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top