ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags17p03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M62720.1|WHTUCP1A Wheat ubiquitin carrier protein (UBC1) mRNA, complete cds Length = 773 Score = 133 bits (67), Expect = 1e-28 Identities = 72/74 (97%) Strand = Plus / Plus Query: 49 gatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggaccc 108 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 116 gatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcggctgcagcaggaccc 175 Query: 109 gcccgncggcatca 122 ||||| |||||||| Sbjct: 176 gcccgccggcatca 189
>gb|BT017249.1| Zea mays clone EL01N0307D01.c mRNA sequence Length = 863 Score = 125 bits (63), Expect = 3e-26 Identities = 74/78 (94%) Strand = Plus / Plus Query: 45 cggagatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcagg 104 ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct: 169 cggagatgtcgacgccggcgaggaagcgcctgatgcgggacttcaagcggttgcagcagg 228 Query: 105 acccgcccgncggcatca 122 ||||||||| |||||||| Sbjct: 229 acccgcccgccggcatca 246
>ref|XM_469945.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1025 Score = 113 bits (57), Expect = 1e-22 Identities = 71/76 (93%) Strand = Plus / Plus Query: 47 gagatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggac 106 |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct: 179 gagatgtcgacgccggcgaggaagcggctgatgcgggacttcaagcggctgcagcaggac 238 Query: 107 ccgcccgncggcatca 122 ||||||| ||| |||| Sbjct: 239 ccgcccgccggaatca 254
>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete sequence Length = 162497 Score = 113 bits (57), Expect = 1e-22 Identities = 71/76 (93%) Strand = Plus / Plus Query: 47 gagatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggac 106 |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct: 112518 gagatgtcgacgccggcgaggaagcggctgatgcgggacttcaagcggctgcagcaggac 112577 Query: 107 ccgcccgncggcatca 122 ||||||| ||| |||| Sbjct: 112578 ccgcccgccggaatca 112593
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 113 bits (57), Expect = 1e-22 Identities = 71/76 (93%) Strand = Plus / Minus Query: 47 gagatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggac 106 |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct: 32631389 gagatgtcgacgccggcgaggaagcggctgatgcgggacttcaagcggctgcagcaggac 32631330 Query: 107 ccgcccgncggcatca 122 ||||||| ||| |||| Sbjct: 32631329 ccgcccgccggaatca 32631314
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 113 bits (57), Expect = 1e-22 Identities = 71/76 (93%) Strand = Plus / Minus Query: 47 gagatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggac 106 |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct: 32721899 gagatgtcgacgccggcgaggaagcggctgatgcgggacttcaagcggctgcagcaggac 32721840 Query: 107 ccgcccgncggcatca 122 ||||||| ||| |||| Sbjct: 32721839 ccgcccgccggaatca 32721824
>dbj|AB079798.1| Oryza sativa (japonica cultivar-group) OsRad6 mRNA for Rad6, complete cds Length = 764 Score = 113 bits (57), Expect = 1e-22 Identities = 71/76 (93%) Strand = Plus / Plus Query: 47 gagatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggac 106 |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct: 172 gagatgtcgacgccggcgaggaagcggctgatgcgggacttcaagcggctgcagcaggac 231 Query: 107 ccgcccgncggcatca 122 ||||||| ||| |||| Sbjct: 232 ccgcccgccggaatca 247
>dbj|AK120251.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045G10, full insert sequence Length = 847 Score = 113 bits (57), Expect = 1e-22 Identities = 71/76 (93%) Strand = Plus / Plus Query: 47 gagatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggac 106 |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct: 179 gagatgtcgacgccggcgaggaagcggctgatgcgggacttcaagcggctgcagcaggac 238 Query: 107 ccgcccgncggcatca 122 ||||||| ||| |||| Sbjct: 239 ccgcccgccggaatca 254
>dbj|AK067703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116J09, full insert sequence Length = 882 Score = 113 bits (57), Expect = 1e-22 Identities = 71/76 (93%) Strand = Plus / Plus Query: 47 gagatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggac 106 |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct: 165 gagatgtcgacgccggcgaggaagcggctgatgcgggacttcaagcggctgcagcaggac 224 Query: 107 ccgcccgncggcatca 122 ||||||| ||| |||| Sbjct: 225 ccgcccgccggaatca 240
>gb|AY103578.1| Zea mays PCO136701 mRNA sequence Length = 1179 Score = 113 bits (57), Expect = 1e-22 Identities = 71/76 (93%) Strand = Plus / Plus Query: 47 gagatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggac 106 |||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||| Sbjct: 340 gagatgtcgacgccggcgaggaagcggctgatgcgggacttcaggcgcctgcagcaggac 399 Query: 107 ccgcccgncggcatca 122 ||||||| ||| |||| Sbjct: 400 ccgcccgccgggatca 415
>gb|BT016345.1| Zea mays clone Contig178 mRNA sequence Length = 965 Score = 105 bits (53), Expect = 3e-20 Identities = 70/76 (92%) Strand = Plus / Minus Query: 47 gagatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggac 106 ||||||||||||||||| |||| ||| |||||||| ||||||| |||||||||||||||| Sbjct: 817 gagatgtcgacgccggctaggaggcgtctgatgcgggacttcaggcgcctgcagcaggac 758 Query: 107 ccgcccgncggcatca 122 ||||||| |||||||| Sbjct: 757 ccgcccgccggcatca 742
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 97.6 bits (49), Expect = 7e-18 Identities = 61/65 (93%) Strand = Plus / Minus Query: 49 gatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggaccc 108 |||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 3625882 gatgtcgacgccggcgaggaagcggctgatgcgggacttcaagcggctgcagcaggaccc 3625823 Query: 109 gcccg 113 |||| Sbjct: 3625822 ccccg 3625818
>dbj|AP003842.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1641_C04 Length = 134367 Score = 97.6 bits (49), Expect = 7e-18 Identities = 61/65 (93%) Strand = Plus / Minus Query: 49 gatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggaccc 108 |||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 95199 gatgtcgacgccggcgaggaagcggctgatgcgggacttcaagcggctgcagcaggaccc 95140 Query: 109 gcccg 113 |||| Sbjct: 95139 ccccg 95135
>dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0039H02 Length = 169162 Score = 97.6 bits (49), Expect = 7e-18 Identities = 61/65 (93%) Strand = Plus / Minus Query: 49 gatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggaccc 108 |||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 163832 gatgtcgacgccggcgaggaagcggctgatgcgggacttcaagcggctgcagcaggaccc 163773 Query: 109 gcccg 113 |||| Sbjct: 163772 ccccg 163768
>dbj|AK121382.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127H21, full insert sequence Length = 895 Score = 97.6 bits (49), Expect = 7e-18 Identities = 61/65 (93%) Strand = Plus / Plus Query: 49 gatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggaccc 108 |||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 155 gatgtcgacgccggcgaggaagcggctgatgcgggacttcaagcggctgcagcaggaccc 214 Query: 109 gcccg 113 |||| Sbjct: 215 ccccg 219
>dbj|AK070524.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055G02, full insert sequence Length = 4109 Score = 97.6 bits (49), Expect = 7e-18 Identities = 61/65 (93%) Strand = Plus / Plus Query: 49 gatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggaccc 108 |||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 111 gatgtcgacgccggcgaggaagcggctgatgcgggacttcaagcggctgcagcaggaccc 170 Query: 109 gcccg 113 |||| Sbjct: 171 ccccg 175
>ref|XM_476729.1| Oryza sativa (japonica cultivar-group), mRNA Length = 459 Score = 95.6 bits (48), Expect = 3e-17 Identities = 60/64 (93%) Strand = Plus / Plus Query: 50 atgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggacccg 109 ||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 1 atgtcgacgccggcgaggaagcggctgatgcgggacttcaagcggctgcagcaggacccc 60 Query: 110 cccg 113 |||| Sbjct: 61 cccg 64
>emb|AJ843121.1| Plantago major mRNA for Ubiquitin-conjugating enzyme (ubc2 gene) Length = 858 Score = 65.9 bits (33), Expect = 2e-08 Identities = 51/57 (89%) Strand = Plus / Plus Query: 49 gatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcagga 105 ||||||||| |||||||||||||| |||||| | ||||||||||| |||||||||| Sbjct: 140 gatgtcgacaccggcgaggaagcggctgatgagggacttcaagcggttgcagcagga 196
>gb|AY017809.1| Oryza sativa microsatellite MRG0134 containing (AG)X12, closest to marker S11633, genomic sequence Length = 224 Score = 48.1 bits (24), Expect = 0.006 Identities = 24/24 (100%) Strand = Plus / Plus Query: 49 gatgtcgacgccggcgaggaagcg 72 |||||||||||||||||||||||| Sbjct: 197 gatgtcgacgccggcgaggaagcg 220
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.006 Identities = 24/24 (100%) Strand = Plus / Plus Query: 49 gatgtcgacgccggcgaggaagcg 72 |||||||||||||||||||||||| Sbjct: 6621538 gatgtcgacgccggcgaggaagcg 6621561
>dbj|AP002094.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0483F08 Length = 148985 Score = 48.1 bits (24), Expect = 0.006 Identities = 24/24 (100%) Strand = Plus / Plus Query: 49 gatgtcgacgccggcgaggaagcg 72 |||||||||||||||||||||||| Sbjct: 101709 gatgtcgacgccggcgaggaagcg 101732
>gb|DQ214532.1| Taeniopygia guttata clone 0058P0018C03 ubiquitin-conjugating enzyme E2B (RAD6-like) variant 1-like mRNA, complete sequence Length = 937 Score = 42.1 bits (21), Expect = 0.36 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 cgcctgatgcgcgacttcaag 91 ||||||||||||||||||||| Sbjct: 47 cgcctgatgcgcgacttcaag 67
>ref|XM_513169.1| PREDICTED: Pan troglodytes similar to family with sequence similarity 43, member B (LOC456591), mRNA Length = 1190 Score = 42.1 bits (21), Expect = 0.36 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 gcgacttcaagcgcctgcagc 101 ||||||||||||||||||||| Sbjct: 608 gcgacttcaagcgcctgcagc 628
>gb|AC135929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0692D12, complete sequence Length = 164064 Score = 42.1 bits (21), Expect = 0.36 Identities = 27/29 (93%) Strand = Plus / Minus Query: 40 gggctcggagatgtcgacgccggcgagga 68 ||||||||||| |||||||||| |||||| Sbjct: 80701 gggctcggagacgtcgacgccgacgagga 80673
>gb|AC134348.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0530H10, complete sequence Length = 148373 Score = 42.1 bits (21), Expect = 0.36 Identities = 27/29 (93%) Strand = Plus / Minus Query: 40 gggctcggagatgtcgacgccggcgagga 68 ||||||||||| |||||||||| |||||| Sbjct: 129933 gggctcggagacgtcgacgccgacgagga 129905
>ref|NM_207334.1| Homo sapiens family with sequence similarity 43, member B (FAM43B), mRNA Length = 2569 Score = 42.1 bits (21), Expect = 0.36 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 gcgacttcaagcgcctgcagc 101 ||||||||||||||||||||| Sbjct: 1143 gcgacttcaagcgcctgcagc 1163
>emb|AL391357.20| Human DNA sequence from clone RP11-401M16 on chromosome 1 Contains the gene for calcium/calmodulin-dependent protein kinase II (CaMKIINalpha), the gene for a novel protein (FLJ12875), a ribosomal protein S4 X-linked (RPS4X) pseudogene, the CDA gene for cytidine deaminase, the PINK1 gene for PTEN induced putative kinase 1, a novel gene (FLJ00387), the DDOST gene for dolichyl-diphosphooligosaccharide-protein glycosyltransferase and the 3' end of the KIF17 gene for kinesin family member 17, complete sequence Length = 195076 Score = 42.1 bits (21), Expect = 0.36 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 gcgacttcaagcgcctgcagc 101 ||||||||||||||||||||| Sbjct: 75388 gcgacttcaagcgcctgcagc 75408
>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29 Length = 277000 Score = 42.1 bits (21), Expect = 0.36 Identities = 24/25 (96%) Strand = Plus / Plus Query: 46 ggagatgtcgacgccggcgaggaag 70 |||||||||| |||||||||||||| Sbjct: 9239 ggagatgtcgtcgccggcgaggaag 9263
>dbj|AK126900.1| Homo sapiens cDNA FLJ44952 fis, clone BRAWH2004078 Length = 2569 Score = 42.1 bits (21), Expect = 0.36 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 gcgacttcaagcgcctgcagc 101 ||||||||||||||||||||| Sbjct: 1143 gcgacttcaagcgcctgcagc 1163
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 0.36 Identities = 27/29 (93%) Strand = Plus / Minus Query: 40 gggctcggagatgtcgacgccggcgagga 68 ||||||||||| |||||||||| |||||| Sbjct: 17136566 gggctcggagacgtcgacgccgacgagga 17136538
>dbj|AB046016.1| Macaca fascicularis brain cDNA, clone:QccE-15449, similar to human family with sequence similarity 43 member B (FAM43B), mRNA, NM_207334 Length = 2033 Score = 42.1 bits (21), Expect = 0.36 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 gcgacttcaagcgcctgcagc 101 ||||||||||||||||||||| Sbjct: 588 gcgacttcaagcgcctgcagc 608
>ref|XM_599043.2| PREDICTED: Bos taurus similar to CG8312-PA, isoform A (LOC520793), mRNA Length = 972 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 cgacttcaagcgcctgcagc 101 |||||||||||||||||||| Sbjct: 609 cgacttcaagcgcctgcagc 628
>dbj|AP004625.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT14E05b, TM0089b, complete sequence Length = 126514 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 tgtcgacgccggcgaggaag 70 |||||||||||||||||||| Sbjct: 100824 tgtcgacgccggcgaggaag 100843
>ref|XM_450443.1| Oryza sativa (japonica cultivar-group), mRNA Length = 659 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 52 gtcgacgccggcgaggaag 70 ||||||||||||||||||| Sbjct: 319 gtcgacgccggcgaggaag 301
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 70 gcgcctgatgcgcgacttcaagc 92 |||||||||||||| |||||||| Sbjct: 1834475 gcgcctgatgcgcggcttcaagc 1834453
>gb|AY457921.1| Sulfitobacter pontiacus putative aldehyde dehydrogenase subunit III gene, partial cds; putative glutathione-dependent alcohol dehydrogenase, putative gamma-carboxymuconolactone decarboxylase (pcaC), putative protocatechuate 3,4 dioxygenase beta subunit (pcaH), and putative protocatechuate 3,4 dioxygenase alpha subunit (pcaG) genes, complete cds; and conserved hypothetical protein gene, partial cds Length = 3938 Score = 38.2 bits (19), Expect = 5.6 Identities = 28/31 (90%) Strand = Plus / Plus Query: 77 atgcgcgacttcaagcgcctgcagcaggacc 107 ||||||| |||||||||||||| ||| |||| Sbjct: 719 atgcgcggcttcaagcgcctgccgcatgacc 749
>gb|AY457920.1| Sulfitobacter sp. EE-36 putative aldehyde dehydrogenase subunit III gene, partial cds; putative glutathione-dependent alcohol dehydrogenase, putative gamma-carboxymuconolactone decarboxylase (pcaC), putative protocatechuate 3,4 dioxygenase beta subunit (pcaH), and putative protocatechuate 3,4 dioxygenase alpha subunit (pcaG) genes, complete cds; and conserved hypothetical protein gene, partial cds Length = 3597 Score = 38.2 bits (19), Expect = 5.6 Identities = 28/31 (90%) Strand = Plus / Plus Query: 77 atgcgcgacttcaagcgcctgcagcaggacc 107 ||||||| |||||||||||||| ||| |||| Sbjct: 726 atgcgcggcttcaagcgcctgccgcatgacc 756
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 49 gatgtcgacgccggcgaggaagc 71 ||||||||||| ||||||||||| Sbjct: 2481984 gatgtcgacgcgggcgaggaagc 2482006
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 gcgcgacttcaagcgcctg 97 ||||||||||||||||||| Sbjct: 1655236 gcgcgacttcaagcgcctg 1655254
>gb|U51672.1|FSU51672 Fusarium solani f. sp. pisi cutinase transcription factor 1 (CTF1 beta) mRNA, complete cds Length = 4234 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 gatgtcgacgccggcgagg 67 ||||||||||||||||||| Sbjct: 1179 gatgtcgacgccggcgagg 1161
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 cgggagcgagggtatcggg 21 ||||||||||||||||||| Sbjct: 1746198 cgggagcgagggtatcggg 1746216
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 52 gtcgacgccggcgaggaag 70 ||||||||||||||||||| Sbjct: 5556504 gtcgacgccggcgaggaag 5556486
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 52 gtcgacgccggcgaggaag 70 ||||||||||||||||||| Sbjct: 206748 gtcgacgccggcgaggaag 206766
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 54 cgacgccggcgaggaagcg 72 ||||||||||||||||||| Sbjct: 1358174 cgacgccggcgaggaagcg 1358192
>dbj|AP005878.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0012I09 Length = 127774 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 52 gtcgacgccggcgaggaag 70 ||||||||||||||||||| Sbjct: 35034 gtcgacgccggcgaggaag 35016
>gb|AY955083.1| Hypocrea lixii ubiquitin conjugating protein mRNA, complete cds Length = 848 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 75 tgatgcgcgacttcaagcg 93 ||||||||||||||||||| Sbjct: 26 tgatgcgcgacttcaagcg 44
>dbj|AK070953.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074H10, full insert sequence Length = 660 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 52 gtcgacgccggcgaggaag 70 ||||||||||||||||||| Sbjct: 319 gtcgacgccggcgaggaag 301
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 gcgcgacttcaagcgcctg 97 ||||||||||||||||||| Sbjct: 1672216 gcgcgacttcaagcgcctg 1672234
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 53 tcgacgccggcgaggaagc 71 ||||||||||||||||||| Sbjct: 923130 tcgacgccggcgaggaagc 923112
>dbj|AB026055.1| Nicotiana tabacum Ntubc1 mRNA for ubiquitin-conjugating enzyme (E2), complete cds Length = 809 Score = 38.2 bits (19), Expect = 5.6 Identities = 28/31 (90%) Strand = Plus / Plus Query: 49 gatgtcgacgccggcgaggaagcgcctgatg 79 ||||||||| |||||||||||| | |||||| Sbjct: 86 gatgtcgacaccggcgaggaagagactgatg 116 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 508,195 Number of Sequences: 3902068 Number of extensions: 508195 Number of successful extensions: 47655 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46879 Number of HSP's gapped (non-prelim): 776 length of query: 122 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 101 effective length of database: 17,151,101,840 effective search space: 1732261285840 effective search space used: 1732261285840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
