ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags18e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YD52_SCHPO (Q10307) Hypothetical protein C6C3.02c in chromosome I 37 0.034
2YHR6_YEAST (P38824) Hypothetical 17.3 kDa protein in ERP5-ORC6 i... 33 0.64
3DCUP_PROMM (Q7V8B4) Uroporphyrinogen decarboxylase (EC 4.1.1.37)... 30 3.2
4YQ5B_CAEEL (Q09254) Hypothetical protein C16C10.11 30 5.4
5GIPR_RAT (P43219) Gastric inhibitory polypeptide receptor precur... 30 5.4
6VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A) 29 9.2
7LEUNG_ARATH (Q9FUY2) Transcriptional corepressor LEUNIG 29 9.2

>YD52_SCHPO (Q10307) Hypothetical protein C6C3.02c in chromosome I|
          Length = 172

 Score = 37.0 bits (84), Expect = 0.034
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 23/106 (21%)
 Frame = +3

Query: 9   IAQGMAFGTGSAMAHRAVDAVMG----------------PRTIQHETVVSEAAASMTP-- 134
           ++     G GSA+ H     + G                P++    +V   A  S  P  
Sbjct: 62  VSTAAGVGIGSAIGHTVGSVITGGFSGSGSNNAPADTSVPQSSYSNSVPEAAYGSAPPST 121

Query: 135 -----MDNAADDKCGNPSKAFQDCINHYGSDISKCQFYLDMLNECR 257
                +   A + C   +K F DCIN +  + S+C +YL+ L  C+
Sbjct: 122 FASSAISEEAKNACKGDAKMFADCINEH--EFSQCSYYLEQLKACQ 165



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>YHR6_YEAST (P38824) Hypothetical 17.3 kDa protein in ERP5-ORC6 intergenic|
           region
          Length = 151

 Score = 32.7 bits (73), Expect = 0.64
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 138 DNAADDKCGNPSKAFQDCINHYGSDISKCQFYLDMLNECRR 260
           D+   D C   SK    C+     D SKCQ Y D   EC++
Sbjct: 97  DSQYYDPCEESSKLSFQCLERNDYDRSKCQEYFDAYRECKK 137



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>DCUP_PROMM (Q7V8B4) Uroporphyrinogen decarboxylase (EC 4.1.1.37) (URO-D) (UPD)|
          Length = 352

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +3

Query: 18  GMAFGTGSAMAHRAVDAVMGPRTIQHETVVSEAAASMTPMDNA 146
           G+ FGT  A+  R VDAV   R  +H   +       TP DNA
Sbjct: 292 GLLFGTPEAIRERIVDAVRKARGRRHILNLGHGILPGTPEDNA 334



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>YQ5B_CAEEL (Q09254) Hypothetical protein C16C10.11|
          Length = 154

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +3

Query: 36  GSAMAHRAVDAVMGPRTIQHETVVSEAAASM-TPMDNAADDKCGNPSKAFQDCINHYGSD 212
           GSA+ H       G  +   E   + AAA    P  +     C    + F DC  +  SD
Sbjct: 77  GSAVGHAVGGMFTGGGSSHAEQAPAAAAAPAGAPQASGYSQPCEFEWRQFVDCAQNQ-SD 135

Query: 213 ISKCQFYLDMLNECR 257
           +S C  + D+  +C+
Sbjct: 136 VSLCNGFNDIFKQCK 150



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>GIPR_RAT (P43219) Gastric inhibitory polypeptide receptor precursor (GIP-R)|
           (Glucose-dependent insulinotropic polypeptide receptor)
          Length = 455

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 439 GLCCPGSISLY*CWNY 486
           GL C GS  +Y CWNY
Sbjct: 55  GLACNGSFDMYACWNY 70



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>VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A)|
          Length = 605

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = -1

Query: 150 QQHCPLES*MQRPQTQQSHAEWYGDPSQRQQP------CAP*HCQYRKPCPEQ 10
           +QHC  E    RP  +QS  E Y +  Q+QQP      C    CQ+++  PE+
Sbjct: 88  RQHCQQEERRLRPHCEQSCREQY-EKQQQQQPDKQFKECQQ-RCQWQEQRPER 138



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>LEUNG_ARATH (Q9FUY2) Transcriptional corepressor LEUNIG|
          Length = 931

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -1

Query: 162 HTYHQQHCPLES*MQRPQTQQSHAEWYGDPS-QRQQPCAP*HCQYRKPCPEQ 10
           H +HQQ    +   Q+ Q QQ        PS Q+QQ   P H Q  +P P+Q
Sbjct: 132 HHHHQQQQQQQQQQQQQQQQQQQQHQNQPPSQQQQQQSTPQHQQ--QPTPQQ 181


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,938,071
Number of Sequences: 219361
Number of extensions: 1245648
Number of successful extensions: 3343
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3341
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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