ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags18e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MEGF6_RAT (O88281) Multiple epidermal growth factor-like domains... 30 5.7
2MEGF6_MOUSE (Q80V70) Multiple epidermal growth factor-like domai... 30 5.7
3NPT2B_MOUSE (Q9DBP0) Sodium-dependent phosphate transport protei... 29 9.7
4ATRN_HUMAN (O75882) Attractin precursor (Mahogany homolog) (DPPT-L) 29 9.7

>MEGF6_RAT (O88281) Multiple epidermal growth factor-like domains 6 precursor|
            (EGF-like domain-containing protein 3) (Multiple EGF-like
            domain protein 3)
          Length = 1574

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 232  QHCLCPTSCGYSFTSSLCRCR*PGVPSVTC 321
            Q CLCPT+      +  CRC  PG   ++C
Sbjct: 1177 QRCLCPTNASCHHVTGECRCP-PGFTGLSC 1205



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>MEGF6_MOUSE (Q80V70) Multiple epidermal growth factor-like domains 6 (EGF-like|
           domain-containing protein 3) (Multiple EGF-like domain
           protein 3) (Fragment)
          Length = 656

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = +1

Query: 229 LQHCLCPTSCGYSFTSSLCRCR*PGVPSVTCSFD 330
           LQ C CPT       S LC C  PG    TC  D
Sbjct: 560 LQQCNCPTGVPCDPISGLCLCP-PGRAGTTCDLD 592



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>NPT2B_MOUSE (Q9DBP0) Sodium-dependent phosphate transport protein 2B|
           (Sodium/phosphate cotransporter 2B) (Na(+)/Pi
           cotransporter 2B) (Sodium-phosphate transport protein
           2B) (Na(+)-dependent phosphate cotransporter 2B)
           (NaPi-2b) (Solute carrier family 34
          Length = 697

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 120 PHLLVFLRPRCLRILRFLCPSFLALNL 200
           P +L+ L   CLR+L+F CP  L L L
Sbjct: 561 PIILLLLLVLCLRMLQFRCPRILPLKL 587



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>ATRN_HUMAN (O75882) Attractin precursor (Mahogany homolog) (DPPT-L)|
          Length = 1429

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +3

Query: 138 LRPRCLRILRFLCPSFLALNLPCRLHHCCLTPALS 242
           LRPR L +L  L P  L L LPC         A+S
Sbjct: 57  LRPRLLLLLLLLSPPLLLLLLPCEAEAAAAAAAVS 91


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,870,540
Number of Sequences: 219361
Number of extensions: 1016812
Number of successful extensions: 2374
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2373
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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