>emb|AL929277.9| Mouse DNA sequence from clone RP23-153J22 on chromosome 4, complete
            sequence
          Length = 144310

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 489  catataaagaggcaaaggaagc 510
            ||||||||||||||||||||||
Sbjct: 5109 catataaagaggcaaaggaagc 5130

>ref|NM_115691.1| Arabidopsis thaliana unknown protein AT3G58290 mRNA, complete cds
          Length = 849

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 468 cttcatctgaagaggacaagg 488
           |||||||||||||||||||||
Sbjct: 512 cttcatctgaagaggacaagg 532

>emb|AL137081.1|ATF9D24 Arabidopsis thaliana DNA chromosome 3, BAC clone F9D24
          Length = 105306

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 468   cttcatctgaagaggacaagg 488
             |||||||||||||||||||||
Sbjct: 79235 cttcatctgaagaggacaagg 79215

>gb|DQ056630.1| Arabidopsis thaliana meprin and TRAF-like domain-containing protein
           (At3g58290) mRNA, complete cds
          Length = 849

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 468 cttcatctgaagaggacaagg 488
           |||||||||||||||||||||
Sbjct: 512 cttcatctgaagaggacaagg 532

>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 42      tcggcctgtttcccactgttgccctcgcc 70
               |||||||||||||| | ||||||||||||
Sbjct: 4322530 tcggcctgtttcccgccgttgccctcgcc 4322558

>ref|NM_104402.2| Arabidopsis thaliana unknown protein AT1G55270 mRNA, complete cds
          Length = 2783

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 437 gtggaagcggctgccaaggctgag 460
           ||||||||||||||||| ||||||
Sbjct: 689 gtggaagcggctgccaaagctgag 666

>gb|AC161193.3| Mus musculus chromosome 8, clone RP23-308L22, complete sequence
          Length = 177860

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    ttcctagccctcaatctccc 202
              ||||||||||||||||||||
Sbjct: 101983 ttcctagccctcaatctccc 101964

>gb|AC112964.8| Mus musculus chromosome 8, clone RP24-82M4, complete sequence
          Length = 193076

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    ttcctagccctcaatctccc 202
              ||||||||||||||||||||
Sbjct: 153946 ttcctagccctcaatctccc 153927

>gb|AC132489.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0537C11,
            complete sequence
          Length = 146677

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  ccctcaatctcccatgccgc 209
            ||||||||||||||||||||
Sbjct: 8777 ccctcaatctcccatgccgc 8758

>gb|AC121362.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0009N21,
              complete sequence
          Length = 164925

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 190    ccctcaatctcccatgccgc 209
              ||||||||||||||||||||
Sbjct: 113487 ccctcaatctcccatgccgc 113468

>ref|XM_415168.1| PREDICTED: Gallus gallus similar to Lymphocyte specific adapter
            protein Lnk (Signal transduction protein Lnk) (Lymphocyte
            adapter protein) (LOC416876), mRNA
          Length = 2466

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  cttcggccccgctgcctccg 157
            ||||||||||||||||||||
Sbjct: 1875 cttcggccccgctgcctccg 1856

>ref|XM_610021.2| PREDICTED: Bos taurus similar to synaptic vesicle protein 2B
           homolog (LOC531523), mRNA
          Length = 1377

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 497 gaggcaaaggaagcgttgat 516
           ||||||||||||||||||||
Sbjct: 569 gaggcaaaggaagcgttgat 550

>gb|AE006645.1| Sulfolobus solfataricus P2 section 4 of 272 of the complete genome
          Length = 10490

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 388  aatgttcctatccatcactt 407
            ||||||||||||||||||||
Sbjct: 8159 aatgttcctatccatcactt 8178

>gb|AC121808.2| Mus musculus BAC clone RP23-449M23 from 13, complete sequence
          Length = 194020

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 235   cattgtctgtgccccacctcatgc 258
             ||||| ||||||||||||||||||
Sbjct: 45185 cattgcctgtgccccacctcatgc 45162

>gb|AC073095.4| Homo sapiens BAC clone RP11-384A20 from 7, complete sequence
          Length = 70276

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 168  ttcctttgccccagcttcct 187
            ||||||||||||||||||||
Sbjct: 7803 ttcctttgccccagcttcct 7822

>gb|AC006204.1| Homo sapiens PAC clone RP5-1102B4 from 7, complete sequence
          Length = 144563

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 325    tttgacagatttgactgctgatca 348
              ||||||||||||||||| ||||||
Sbjct: 141044 tttgacagatttgactgatgatca 141021

>gb|AC009831.21| Homo sapiens chromosome , clone RP11-326K13, complete sequence
          Length = 179409

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 453   aggctgaggcaagggcttca 472
             ||||||||||||||||||||
Sbjct: 62604 aggctgaggcaagggcttca 62623

>gb|AY051069.1| Arabidopsis thaliana unknown protein (At1g55270) mRNA, complete cds
          Length = 1336

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 437 gtggaagcggctgccaaggctgag 460
           ||||||||||||||||| ||||||
Sbjct: 478 gtggaagcggctgccaaagctgag 455

>gb|AF370138.1| Arabidopsis thaliana unknown protein (At1g55270) mRNA, complete cds
          Length = 1878

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 437 gtggaagcggctgccaaggctgag 460
           ||||||||||||||||| ||||||
Sbjct: 689 gtggaagcggctgccaaagctgag 666

>gb|AC106128.6| Rattus norvegicus 1 BAC CH230-149H17 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 210385

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   caccctcacctgctggtctt 136
             ||||||||||||||||||||
Sbjct: 19170 caccctcacctgctggtctt 19189

>dbj|AK139990.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length
            enriched library, clone:B230033L12
            product:unclassifiable, full insert sequence
          Length = 2874

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 396  tatccatcactttcatcttg 415
            ||||||||||||||||||||
Sbjct: 1247 tatccatcactttcatcttg 1266

>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 456   ctgaggcaagggcttcatct 475
             ||||||||||||||||||||
Sbjct: 64261 ctgaggcaagggcttcatct 64242

>gb|AC131867.4| Rattus norvegicus 1 BAC CH230-397C2 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 133470

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    caccctcacctgctggtctt 136
              ||||||||||||||||||||
Sbjct: 107830 caccctcacctgctggtctt 107849

>gb|U55373.2| Caenorhabditis elegans cosmid F26F12, complete sequence
          Length = 42467

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 389   atgttcctatccatcacttt 408
             ||||||||||||||||||||
Sbjct: 36088 atgttcctatccatcacttt 36069

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 190     ccctcaatctcccatgccgc 209
               ||||||||||||||||||||
Sbjct: 9236832 ccctcaatctcccatgccgc 9236813

>gb|AC027034.10|AC027034 Arabidopsis thaliana chromosome 1 BAC F7A10 genomic sequence, complete
             sequence
          Length = 101954

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 437   gtggaagcggctgccaaggctgag 460
             ||||||||||||||||| ||||||
Sbjct: 59261 gtggaagcggctgccaaagctgag 59238

>gb|DQ343564.1| Populus trichocarpa glucose-6-phosphate dehydrogenase (G6PDH2) mRNA,
            complete cds
          Length = 1877

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 195  aatctcccatgccgccttca 214
            ||||||||||||||||||||
Sbjct: 1573 aatctcccatgccgccttca 1554

>gb|AC140397.2| Mus musculus BAC clone RP23-162E7 from chromosome 13, complete sequence
          Length = 233829

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 235    cattgtctgtgccccacctcatgc 258
              ||||| ||||||||||||||||||
Sbjct: 196576 cattgcctgtgccccacctcatgc 196599

>emb|AL954654.7| Mouse DNA sequence from clone RP23-27A8 on chromosome 2, complete
             sequence
          Length = 81895

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 396   tatccatcactttcatcttg 415
             ||||||||||||||||||||
Sbjct: 26042 tatccatcactttcatcttg 26061

>gb|AC092096.28| Mus musculus strain C57BL/6J chromosome 10 clone rp23-39k4, complete
             sequence
          Length = 114350

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 396   tatccatcactttcatcttg 415
             ||||||||||||||||||||
Sbjct: 30471 tatccatcactttcatcttg 30490


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,313,297
Number of Sequences: 3902068
Number of extensions: 5313297
Number of successful extensions: 94408
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94299
Number of HSP's gapped (non-prelim): 109
length of query: 543
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 520
effective length of database: 17,143,297,704
effective search space: 8914514806080
effective search space used: 8914514806080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)