>RF1_ORYSA (Q76C99) Rf1 protein, mitochondrial precursor (PPR protein)|
           (Fertility restorer) (Restorer for CMS)
          Length = 791

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 2/188 (1%)
 Frame = +3

Query: 45  LEPDLIVYNAVLNACVQQKQWEGTFWVLQQLKEKNIRPTNTTYGLVMEVMLVCGKYNLVY 224
           L P+ + Y AV+    +  + E      +Q+ ++ + P N  Y  ++  +  C K+    
Sbjct: 402 LNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAE 461

Query: 225 EFFDRVKQKSIP-GALNYKVLVNALWREGKIDEAVMAVKDMENRGIVGSASLYYDLARCL 401
           E    +  + I    + +  ++++  +EG++ E+    + M   G+  +   Y  L    
Sbjct: 462 ELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGY 521

Query: 402 CSGGRCKEALLQVEKICKVANKPLVVTYTGLIQICIDSGSIENAKYIFKEM-CNYCSPNN 578
           C  G+  EA+  +  +  V  KP  VTY+ LI        +E+A  +FKEM  +  SP+ 
Sbjct: 522 CLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDI 581

Query: 579 VTCNIMLK 602
           +T NI+L+
Sbjct: 582 ITYNIILQ 589



 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 42/194 (21%), Positives = 90/194 (46%), Gaps = 2/194 (1%)
 Frame = +3

Query: 45  LEPDLIVYNAVLNACVQQKQWEGTFWVLQQLKEKNIRPTNTTYGLVMEVMLVCGKYNLVY 224
           +EPD++ Y+ +++   +  +      +   + ++ ++P  TTYG +++     G    ++
Sbjct: 297 VEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 356

Query: 225 EFFDRVKQKSI-PGALNYKVLVNALWREGKIDEAVMAVKDMENRGIVGSASLYYDLARCL 401
              D + +  I P    + +L+ A  ++GK+D+A++    M  +G+  +A  Y  +   L
Sbjct: 357 GLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGIL 416

Query: 402 CSGGRCKEALLQVEKICKVANKPLVVTYTGLIQICIDSGSIENAKYIFKEMCNY-CSPNN 578
           C  GR ++A+L  E++      P  + Y  LI         E A+ +  EM +     N 
Sbjct: 417 CKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNT 476

Query: 579 VTCNIMLKSYIDHG 620
           +  N ++ S+   G
Sbjct: 477 IFFNSIIDSHCKEG 490



 Score = 62.8 bits (151), Expect = 8e-10
 Identities = 43/192 (22%), Positives = 82/192 (42%), Gaps = 2/192 (1%)
 Frame = +3

Query: 51  PDLIVYNAVLNACVQQKQWEGTFWVLQQLKEKNIRPTNTTYGLVMEVMLVCGKYNLVYEF 230
           PD++ Y  V+N   ++   +  +    ++ ++ I P   TY  ++  +      +   E 
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEV 253

Query: 231 FDR-VKQKSIPGALNYKVLVNALWREGKIDEAVMAVKDMENRGIVGSASLYYDLARCLCS 407
            +  VK   +P  + Y  +++     G+  EA+  +K M + G+      Y  L   LC 
Sbjct: 254 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCK 313

Query: 408 GGRCKEALLQVEKICKVANKPLVVTYTGLIQICIDSGSIENAKYIFKEMC-NYCSPNNVT 584
            GRC EA    + + K   KP + TY  L+Q     G++     +   M  N   P++  
Sbjct: 314 NGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYV 373

Query: 585 CNIMLKSYIDHG 620
            +I++ +Y   G
Sbjct: 374 FSILICAYAKQG 385



 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 37/225 (16%)
 Frame = +3

Query: 36  DPRLEPDLIVYNAVLNACVQQKQWEGTFWVLQQLKEKNIRPTNTTYGLVMEVMLVCGKYN 215
           D  + PD++ YN+++ A  + +  +    VL  + +  + P   TY  ++      G+  
Sbjct: 224 DRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPK 283

Query: 216 LVYEFFDRVKQKSI-PGALNYKVLVNALWREGKIDEAVMAVKDMENRGIVGSASLY---- 380
               F  +++   + P  + Y +L++ L + G+  EA      M  RG+    + Y    
Sbjct: 284 EAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLL 343

Query: 381 ----------------------------YDLARCLCS---GGRCKEALLQVEKICKVANK 467
                                       Y  +  +C+    G+  +A+L   K+ +    
Sbjct: 344 QGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLN 403

Query: 468 PLVVTYTGLIQICIDSGSIENAKYIFKEMCNY-CSPNNVTCNIML 599
           P  VTY  +I I   SG +E+A   F++M +   SP N+  N ++
Sbjct: 404 PNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLI 448



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 43/195 (22%), Positives = 81/195 (41%), Gaps = 5/195 (2%)
 Frame = +3

Query: 51  PDLIVYNAVLNACVQQKQWEGTFWVLQQLKEKN---IRPTNTTYGLVMEVMLVCGKYNLV 221
           P++  YN +L     + + +    +L  + +       P   +Y  V+      G  +  
Sbjct: 156 PNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKA 215

Query: 222 YEFFDRVKQKSI-PGALNYKVLVNALWREGKIDEAVMAVKDMENRGIVGSASLYYDLARC 398
           Y  +  +  + I P  + Y  ++ AL +   +D+A+  +  M   G++     Y  +   
Sbjct: 216 YSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHG 275

Query: 399 LCSGGRCKEALLQVEKICKVANKPLVVTYTGLIQICIDSGSIENAKYIFKEMCNY-CSPN 575
            CS G+ KEA+  ++K+     +P VVTY+ L+     +G    A+ IF  M      P 
Sbjct: 276 YCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPE 335

Query: 576 NVTCNIMLKSYIDHG 620
             T   +L+ Y   G
Sbjct: 336 ITTYGTLLQGYATKG 350



 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 37/173 (21%), Positives = 77/173 (44%), Gaps = 3/173 (1%)
 Frame = +3

Query: 36  DPRLEPDLIVYNAVLNACVQQKQWEGTFWVLQQLKEKNIRPTNTTYGLVMEVMLVCGKY- 212
           D  L P  IVYN++++      +WE    ++ ++ ++ I      +  +++     G+  
Sbjct: 434 DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVI 493

Query: 213 --NLVYEFFDRVKQKSIPGALNYKVLVNALWREGKIDEAVMAVKDMENRGIVGSASLYYD 386
               ++E   R+  K  P  + Y  L+N     GK+DEA+  +  M + G+  +   Y  
Sbjct: 494 ESEKLFELMVRIGVK--PNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYST 551

Query: 387 LARCLCSGGRCKEALLQVEKICKVANKPLVVTYTGLIQICIDSGSIENAKYIF 545
           L    C   R ++AL+  +++      P ++TY  ++Q    +     AK ++
Sbjct: 552 LINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELY 604



 Score = 36.6 bits (83), Expect = 0.062
 Identities = 26/167 (15%), Positives = 74/167 (44%), Gaps = 1/167 (0%)
 Frame = +3

Query: 60  IVYNAVLNACVQQKQWEGTFWVLQQLKEKNIRPTNTTYGLVMEVMLVCGKYNLVYEFFDR 239
           I +N+++++  ++ +   +  + + +    ++P   TY  ++    + GK +   +    
Sbjct: 477 IFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSG 536

Query: 240 VKQKSI-PGALNYKVLVNALWREGKIDEAVMAVKDMENRGIVGSASLYYDLARCLCSGGR 416
           +    + P  + Y  L+N   +  ++++A++  K+ME+ G+      Y  + + L    R
Sbjct: 537 MVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRR 596

Query: 417 CKEALLQVEKICKVANKPLVVTYTGLIQICIDSGSIENAKYIFKEMC 557
              A     +I +   +  + TY  ++     +   ++A  +F+ +C
Sbjct: 597 TAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLC 643



 Score = 35.8 bits (81), Expect = 0.11
 Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 6/156 (3%)
 Frame = +3

Query: 150 IRPTNTTYGLVMEVMLVCGKYNLVYEFFDRVKQKSIP-GALNYKVLVNALWREGKIDEAV 326
           + P   TYG+++      G+ +L +     V +K     A+ +  L+  L  + +  +A+
Sbjct: 83  VTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 142

Query: 327 -MAVKDMENRGIVGSASLYYDLARCLCSGGRCKEALLQVEKICK---VANKPLVVTYTGL 494
            + ++ M   G + +   Y  L + LC   R +EAL  +  +       + P VV+YT +
Sbjct: 143 DIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTV 202

Query: 495 IQICIDSGSIENAKYIFKEMCNY-CSPNNVTCNIML 599
           I      G  + A   + EM +    P+ VT N ++
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSII 238



 Score = 32.7 bits (73), Expect = 0.90
 Identities = 24/128 (18%), Positives = 55/128 (42%), Gaps = 1/128 (0%)
 Frame = +3

Query: 45  LEPDLIVYNAVLNACVQQKQWEGTFWVLQQLKEKNIRPTNTTYGLVMEVMLVCGKYNLVY 224
           + PD+I YN +L    Q ++      +  ++ E   +   +TY +++  +      +   
Sbjct: 577 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 636

Query: 225 EFFDRVKQKSIP-GALNYKVLVNALWREGKIDEAVMAVKDMENRGIVGSASLYYDLARCL 401
           + F  +    +   A  + ++++AL + G+ DEA        + G+V +   Y  +A  +
Sbjct: 637 QMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENI 696

Query: 402 CSGGRCKE 425
              G  +E
Sbjct: 697 IGQGLLEE 704

>Y4791_ARATH (P0C043) Hypothetical PPR-repeat protein At4g17915|
          Length = 463

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 2/175 (1%)
 Frame = +3

Query: 36  DPRLEPDLIVYNAVLNACVQQKQWEGTFWVLQQLKEKNIRPTNTTYGLVMEVMLVCGKYN 215
           D  + PD+  YN+++    ++   +   ++  ++ E  I P   +Y  +M      GK+ 
Sbjct: 76  DAGIRPDVATYNSLIAGAARRLMLDHVLYLFDEMLEWGIYPDLWSYNTLMCCYFKLGKHE 135

Query: 216 LVYEFFDRVKQKS--IPGALNYKVLVNALWREGKIDEAVMAVKDMENRGIVGSASLYYDL 389
             +    +  Q +   PG   Y VL++AL + G ID A+   K+M++R        Y  L
Sbjct: 136 EAFRVLYKDLQLAGLNPGPDTYNVLLDALCKCGYIDNALELFKEMQSR-FKPELMTYNIL 194

Query: 390 ARCLCSGGRCKEALLQVEKICKVANKPLVVTYTGLIQICIDSGSIENAKYIFKEM 554
              LC   R   A   + ++ K    P  VTYT ++++   +  I     +F EM
Sbjct: 195 INGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGLQLFLEM 249



 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 51/195 (26%), Positives = 93/195 (47%), Gaps = 7/195 (3%)
 Frame = +3

Query: 45  LEPDLIVYNAVLNACVQQKQWEGTFWVLQQLKEKNIRPTNTTY-----GLVMEVMLVCGK 209
           ++PD++ YN +++   +    E  + V +++++  IRP   TY     G    +ML    
Sbjct: 44  VDPDVVTYNTLISGYCRFVGIEEAYAVTRRMRDAGIRPDVATYNSLIAGAARRLML---- 99

Query: 210 YNLVYEFFDRVKQKSIPGALNYKVLVNALWREGKIDEAVMAV-KDMENRGIVGSASLYYD 386
            +++Y F + ++    P   +Y  L+   ++ GK +EA   + KD++  G+      Y  
Sbjct: 100 DHVLYLFDEMLEWGIYPDLWSYNTLMCCYFKLGKHEEAFRVLYKDLQLAGLNPGPDTYNV 159

Query: 387 LARCLCSGGRCKEALLQVEKICKVANKPLVVTYTGLIQICIDSGSIENAKYIFKEM-CNY 563
           L   LC  G    A L++ K  +   KP ++TY  LI     S  +  AK++  E+  + 
Sbjct: 160 LLDALCKCGYIDNA-LELFKEMQSRFKPELMTYNILINGLCKSRRVGTAKWMLTELKKSG 218

Query: 564 CSPNNVTCNIMLKSY 608
            +PN VT   +LK Y
Sbjct: 219 YTPNAVTYTTILKLY 233



 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 38/195 (19%), Positives = 79/195 (40%), Gaps = 36/195 (18%)
 Frame = +3

Query: 51  PDLIVYNAVLNACVQQKQWEGTFWVL-QQLKEKNIRPTNTTYGLVMEVMLVCGKYNLVYE 227
           PDL  YN ++    +  + E  F VL + L+   + P   TY ++++ +  CG  +   E
Sbjct: 116 PDLWSYNTLMCCYFKLGKHEEAFRVLYKDLQLAGLNPGPDTYNVLLDALCKCGYIDNALE 175

Query: 228 FFDRVKQKSIPGALNYKVLVNALWREGKIDEAVMAVKDMENRGIVGSASLY--------- 380
            F  ++ +  P  + Y +L+N L +  ++  A   + +++  G   +A  Y         
Sbjct: 176 LFKEMQSRFKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFK 235

Query: 381 --------------------YD------LARCLCSGGRCKEALLQVEKICKVANKPLVVT 482
                               YD      +   L   GR KEA   ++++ +   +  +V+
Sbjct: 236 TRRIRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVS 295

Query: 483 YTGLIQICIDSGSIE 527
           Y  L+ +    G+++
Sbjct: 296 YNTLLNLYFKDGNLD 310



 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 39/188 (20%), Positives = 79/188 (42%), Gaps = 2/188 (1%)
 Frame = +3

Query: 42  RLEPDLIVYNAVLNACVQQKQWEGTFWVLQQLKEKNIRPTNTTYGLVMEVMLVCGKYNLV 221
           R +P+L+ YN ++N   + ++     W+L +LK+    P   TY  ++++     +    
Sbjct: 183 RFKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRG 242

Query: 222 YEFFDRVKQKSIP-GALNYKVLVNALWREGKIDEAVMAVKDMENRGIVGSASLYYDLARC 398
            + F  +K++        Y  +V+AL + G+  EA   ++++  +G       Y  L   
Sbjct: 243 LQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNL 302

Query: 399 LCSGGRCKEALLQVEKICKVANKPLVVTYTGLIQICIDSGSIENAKYIFKEMCNY-CSPN 575
               G        + +I +   K    T+T ++   + +G    A+  F  M       N
Sbjct: 303 YFKDGNLDAVDDLLGEIERRGMKADEYTHTIIVNGLLRTGQTRRAEEHFVSMGEMGIGLN 362

Query: 576 NVTCNIML 599
            VTCN ++
Sbjct: 363 LVTCNCLV 370

>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I|
          Length = 1261

 Score = 39.3 bits (90), Expect = 0.010
 Identities = 18/69 (26%), Positives = 38/69 (55%)
 Frame = +3

Query: 45   LEPDLIVYNAVLNACVQQKQWEGTFWVLQQLKEKNIRPTNTTYGLVMEVMLVCGKYNLVY 224
            ++P + +YNAVL+   + ++    + + Q++KE  + PT+ TYG V+      G  +L  
Sbjct: 922  VKPSVFLYNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGTVINAACRIGDESLAE 981

Query: 225  EFFDRVKQK 251
            + F  ++ +
Sbjct: 982  KLFAEMENQ 990



 Score = 38.5 bits (88), Expect = 0.016
 Identities = 36/163 (22%), Positives = 70/163 (42%), Gaps = 8/163 (4%)
 Frame = +3

Query: 96   QKQWEGTFWVLQQLKEKNIRPTNTTYGLVMEVMLVCGKYNLVYE----FFDRVKQKS-IP 260
            Q+ +E +  + +++  K++   N    L+++ M++   +   ++    F D +K    IP
Sbjct: 827  QRVFEHSKHLYRKISTKSLEKANWFMALILDAMILSSSFARQFKSSNLFCDNMKMLGYIP 886

Query: 261  GALNYKVLVNALWREGKIDEAVMAV---KDMENRGIVGSASLYYDLARCLCSGGRCKEAL 431
             A  +  L+N   R G  D+A  A+   ++ +   +  S  LY  +   L    R  E  
Sbjct: 887  RASTFAHLINNSTRRGDTDDATTALNIFEETKRHNVKPSVFLYNAVLSKLGRARRTTECW 946

Query: 432  LQVEKICKVANKPLVVTYTGLIQICIDSGSIENAKYIFKEMCN 560
               +++ +    P  VTY  +I      G    A+ +F EM N
Sbjct: 947  KLFQEMKESGLLPTSVTYGTVINAACRIGDESLAEKLFAEMEN 989



 Score = 31.6 bits (70), Expect = 2.0
 Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +3

Query: 123  VLQQLKEKNIRPTNTTYGLVMEVMLVCGKYNLVYEFFDRVKQKSI-PGALNYKVLVNALW 299
            + ++ K  N++P+   Y  V+  +    +    ++ F  +K+  + P ++ Y  ++NA  
Sbjct: 913  IFEETKRHNVKPSVFLYNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGTVINAAC 972

Query: 300  REGKIDEAVMAVKDMENR 353
            R G    A     +MEN+
Sbjct: 973  RIGDESLAEKLFAEMENQ 990

>YG3M_YEAST (P48237) Hypothetical 101.4 kDa protein in RPL24B-RSR1 intergenic|
           region
          Length = 864

 Score = 38.9 bits (89), Expect = 0.013
 Identities = 14/48 (29%), Positives = 29/48 (60%)
 Frame = +3

Query: 51  PDLIVYNAVLNACVQQKQWEGTFWVLQQLKEKNIRPTNTTYGLVMEVM 194
           PD+  YN +L  C +++ +     + Q++++ NI+PT  TY ++  V+
Sbjct: 355 PDICTYNTMLRICEKERNFPKALDLFQEIQDHNIKPTTNTYIMMARVL 402

>LPPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP130)|
           (Leucine-rich PPR motif-containing protein)
          Length = 1273

 Score = 35.0 bits (79), Expect = 0.18
 Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 4/135 (2%)
 Frame = +3

Query: 54  DLIVYNAVLNACVQQKQWEGTFWVLQQLKEKNIRPTNTTYGLVMEVMLVCGKYNLVYEFF 233
           D+  YNA+L   +Q +        L +++E NI+P   TY  ++      G      +  
Sbjct: 40  DVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIASYCNVGDIEGASKIL 99

Query: 234 DRVKQKSIP-GALNYKVLVNALWREGKIDEAVMAVKDMENRGIVGSASLYYDLARCLCSG 410
             +K K +P     +  LV    R G ++ A   +  M + GI      Y  L       
Sbjct: 100 GFMKTKDLPVTEAVFSALVTGHARAGDMENAENILTVMRDAGIEPGPDTYLALLNAYAEK 159

Query: 411 G---RCKEALLQVEK 446
           G     K+ L +VEK
Sbjct: 160 GDIDHVKQTLEKVEK 174



 Score = 32.7 bits (73), Expect = 0.90
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +3

Query: 225 EFFDRVKQKSIPGALNYKVLVNALWREGKIDEAVMAVKDMENRGIV 362
           E FDR+   ++    NY  LV  L + GK+ +A+  +K+M+ + ++
Sbjct: 614 EEFDRLDSSAVLDTGNYLGLVRVLAKHGKLQDAIKILKEMKEKDVL 659

>GAK5_HUMAN (P62684) HERV-K_19p13.11 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K113 Gag protein) [Contains: Matrix
           protein; Capsid protein; Nucleocapsid protein]
          Length = 665

 Score = 33.5 bits (75), Expect = 0.53
 Identities = 31/115 (26%), Positives = 48/115 (41%)
 Frame = +3

Query: 240 VKQKSIPGALNYKVLVNALWREGKIDEAVMAVKDMENRGIVGSASLYYDLARCLCSGGRC 419
           V QKSI      KV+V  +  E    E   A+K ++ +   GS  +   +  C   GG  
Sbjct: 460 VAQKSIADEKARKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYVKACDGMGGAM 519

Query: 420 KEALLQVEKICKVANKPLVVTYTGLIQICIDSGSIENAKYIFKEMCNYCSPNNVT 584
            +A+L  + I  V     V T+ G    C + G I +     K+ C   +  N+T
Sbjct: 520 HKAMLMAQAITGVVLGGQVRTFGGK---CYNCGQIGH----LKKNCPVLNKQNIT 567

>PTCD1_MOUSE (Q8C2E4) Pentatricopeptide repeat protein 1|
          Length = 695

 Score = 33.1 bits (74), Expect = 0.69
 Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 8/163 (4%)
 Frame = +3

Query: 90  VQQKQWEGTFWVLQQLKEKNIRPTNTTYGLVMEVMLVCGKYNLVYEFFDR--VKQKSI-P 260
           +Q K+  G    L+    +  R T   Y    + ++  GK     + F+R  +K++ + P
Sbjct: 110 LQLKEQGGEEEELEPRPWRGRRNTQYWYFFQCKRLIKEGKLAEALDLFERQMLKEERLQP 169

Query: 261 GALNYKVLVNALWREGKIDEAVMAVKDMENRGIVGSASLYYDLARCLCSGGRCKEALLQ- 437
              NY VL+    R G + +A     DM+ R +  S + Y  L   +C+    K++ LQ 
Sbjct: 170 LECNYTVLIGGCGRVGYLKKAFRLFNDMKKRDLEPSDATYTALFN-VCAESPWKDSALQS 228

Query: 438 ---VEKICKVANKPL-VVTYTGLIQICIDSGSIENAKYIFKEM 554
              + +  +  N  L + TY  L+++      +     +FKE+
Sbjct: 229 ALKLRQQLQARNFQLNLKTYHALLKVAAKCADLRLCLDVFKEI 271

>GAK4_HUMAN (P63126) HERV-K_6q14.1 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K109 Gag protein) (HERV-K(C6) Gag
           protein) [Contains: Matrix protein; Capsid protein;
           Nucleocapsid protein]
          Length = 665

 Score = 33.1 bits (74), Expect = 0.69
 Identities = 31/115 (26%), Positives = 48/115 (41%)
 Frame = +3

Query: 240 VKQKSIPGALNYKVLVNALWREGKIDEAVMAVKDMENRGIVGSASLYYDLARCLCSGGRC 419
           V QKSI      KV+V  +  E    E   A+K ++ +   GS  +   +  C   GG  
Sbjct: 460 VAQKSIADEKARKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYVKACDGIGGAM 519

Query: 420 KEALLQVEKICKVANKPLVVTYTGLIQICIDSGSIENAKYIFKEMCNYCSPNNVT 584
            +A+L  + I  V     V T+ G    C + G I +     K+ C   +  N+T
Sbjct: 520 HKAMLMAQAITGVVLGGQVRTFGGK---CYNCGQIGH----LKKNCPVLNKQNIT 567

>GAK1_HUMAN (P62683) HERV-K_12q14.1 provirus ancestral Gag polyprotein (Gag|
           polyprotein) [Contains: Matrix protein; Capsid protein;
           Nucleocapsid protein]
          Length = 665

 Score = 33.1 bits (74), Expect = 0.69
 Identities = 31/115 (26%), Positives = 48/115 (41%)
 Frame = +3

Query: 240 VKQKSIPGALNYKVLVNALWREGKIDEAVMAVKDMENRGIVGSASLYYDLARCLCSGGRC 419
           V QKSI      KV+V  +  E    E   A+K ++ +   GS  +   +  C   GG  
Sbjct: 460 VAQKSIADEKARKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYVKACDGIGGAM 519

Query: 420 KEALLQVEKICKVANKPLVVTYTGLIQICIDSGSIENAKYIFKEMCNYCSPNNVT 584
            +A+L  + I  V     V T+ G    C + G I +     K+ C   +  N+T
Sbjct: 520 HKAMLMAQAITGVVLGGQVRTFGGK---CYNCGQIGH----LKKNCPVLNKQNIT 567

>GAK12_HUMAN (P63130) HERV-K_1q22 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K102 Gag protein) (HERV-K(III) Gag
           protein) [Contains: Matrix protein; Capsid protein;
           Nucleocapsid protein]
          Length = 665

 Score = 33.1 bits (74), Expect = 0.69
 Identities = 31/115 (26%), Positives = 48/115 (41%)
 Frame = +3

Query: 240 VKQKSIPGALNYKVLVNALWREGKIDEAVMAVKDMENRGIVGSASLYYDLARCLCSGGRC 419
           V QKSI      KV+V  +  E    E   A+K ++ +   GS  +   +  C   GG  
Sbjct: 460 VAQKSIADEKARKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYVKACDGIGGAM 519

Query: 420 KEALLQVEKICKVANKPLVVTYTGLIQICIDSGSIENAKYIFKEMCNYCSPNNVT 584
            +A+L  + I  V     V T+ G    C + G I +     K+ C   +  N+T
Sbjct: 520 HKAMLMAQAITGVVLGGQVRTFGGK---CYNCGQIGH----LKKNCPVLNKQNIT 567

>GAK11_HUMAN (P63145) HERV-K_22q11.21 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K101 Gag protein) [Contains: Matrix
           protein; Capsid protein; Nucleocapsid protein]
          Length = 665

 Score = 33.1 bits (74), Expect = 0.69
 Identities = 31/115 (26%), Positives = 48/115 (41%)
 Frame = +3

Query: 240 VKQKSIPGALNYKVLVNALWREGKIDEAVMAVKDMENRGIVGSASLYYDLARCLCSGGRC 419
           V QKSI      KV+V  +  E    E   A+K ++ +   GS  +   +  C   GG  
Sbjct: 460 VAQKSIADEKARKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYVKACDGIGGAM 519

Query: 420 KEALLQVEKICKVANKPLVVTYTGLIQICIDSGSIENAKYIFKEMCNYCSPNNVT 584
            +A+L  + I  V     V T+ G    C + G I +     K+ C   +  N+T
Sbjct: 520 HKAMLMAQAITGVVLGGQVRTFGGK---CYNCGQIGH----LKKNCPVLNKQNIT 567

>GAK6_HUMAN (P62685) HERV-K_8p23.1 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K115 Gag protein) [Contains: Matrix
           protein; Capsid protein; Nucleocapsid protein]
          Length = 646

 Score = 33.1 bits (74), Expect = 0.69
 Identities = 31/115 (26%), Positives = 48/115 (41%)
 Frame = +3

Query: 240 VKQKSIPGALNYKVLVNALWREGKIDEAVMAVKDMENRGIVGSASLYYDLARCLCSGGRC 419
           V QKSI      KV+V  +  E    E   A+K ++ +   GS  +   +  C   GG  
Sbjct: 460 VAQKSIADEKARKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYVKACDGIGGAM 519

Query: 420 KEALLQVEKICKVANKPLVVTYTGLIQICIDSGSIENAKYIFKEMCNYCSPNNVT 584
            +A+L  + I  V     V T+ G    C + G I +     K+ C   +  N+T
Sbjct: 520 HKAMLMAQAITGVVLGGQVRTFGGK---CYNCGQIGH----LKKNCPVLNKQNIT 567

>GAK10_HUMAN (P87889) HERV-K_5q33.3 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K10 Gag protein) (HERV-K107 Gag
           protein) [Contains: Matrix protein; Capsid protein;
           Nucleocapsid protein]
          Length = 665

 Score = 32.7 bits (73), Expect = 0.90
 Identities = 31/115 (26%), Positives = 48/115 (41%)
 Frame = +3

Query: 240 VKQKSIPGALNYKVLVNALWREGKIDEAVMAVKDMENRGIVGSASLYYDLARCLCSGGRC 419
           V QKSI      KV+V  +  E    E   A+K ++ +   GS  +   +  C   GG  
Sbjct: 460 VAQKSIADEKAGKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYVKACDGIGGAM 519

Query: 420 KEALLQVEKICKVANKPLVVTYTGLIQICIDSGSIENAKYIFKEMCNYCSPNNVT 584
            +A+L  + I  V     V T+ G    C + G I +     K+ C   +  N+T
Sbjct: 520 HKAMLMAQAITGVVLGGQVRTFGGK---CYNCGQIGH----LKKNCPVLNKQNIT 567

>GAK3_HUMAN (Q9YNA8) HERV-K_19q12 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K(C19) Gag protein) [Contains: Matrix
           protein; Capsid protein; Nucleocapsid protein]
          Length = 665

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 31/115 (26%), Positives = 48/115 (41%)
 Frame = +3

Query: 240 VKQKSIPGALNYKVLVNALWREGKIDEAVMAVKDMENRGIVGSASLYYDLARCLCSGGRC 419
           V QKSI      KV+V  +  E    E   A+K ++ +   GS  +   +  C   GG  
Sbjct: 460 VAQKSIAIEKARKVIVELMAYENPNPECQSAIKPLKGKVPAGSDVISEYVKACDGMGGAM 519

Query: 420 KEALLQVEKICKVANKPLVVTYTGLIQICIDSGSIENAKYIFKEMCNYCSPNNVT 584
            +A+L  + I  V     V T+ G    C + G I +     K+ C   +  N+T
Sbjct: 520 HKAMLMAQAITGVVLGGQVRTFGGK---CYNCGQIGH----LKKNCPVLNKQNIT 567

>Y1345_METJA (Q58741) Hypothetical protein MJ1345|
          Length = 314

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 41/169 (24%), Positives = 78/169 (46%), Gaps = 5/169 (2%)
 Frame = +3

Query: 42  RLEPDLIVYN----AVLNACVQQKQWEGTFWVLQQLKEKNIRPTNTTYGLVMEVMLVCGK 209
           +L+P  I+ N    A+L +  + ++ +  F  L +L EK+  P       +++ +   G+
Sbjct: 73  KLKPKYILANFLKGALLVSLGKLEEAKEVFLKLCRL-EKSDLPVKYVTAFILKKL---GE 128

Query: 210 YNLVYEFFDRVKQKSIPGALNYKVLVNALWREGKIDEAVMAVKDMENRGIVGSASLYYDL 389
           Y+   +  D++ +K    A+ +      L+REGK+ +++    +          SL Y  
Sbjct: 129 YDYALKIIDKILKKYPKSAIAWAEKGEILYREGKLKKSLECFDNALKINPKDCQSLLYK- 187

Query: 390 ARCLCSGGRCKEALLQVEKICKVANKPL-VVTYTGLIQICIDSGSIENA 533
              L   GR  EAL  ++K+ +  NK +  + Y  +IQI I  G +  A
Sbjct: 188 GEILFKLGRYGEALKCLKKVFERNNKDIRALMY--IIQILIYLGRLNQA 234



 Score = 31.6 bits (70), Expect = 2.0
 Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
 Frame = +3

Query: 204 GKYNLVYEFFDRVKQ--KSIPGALNYKVLVNALWREGKIDEAV 326
           GKYN   ++FD+V +   +IP A N K +  AL + GKI+EA+
Sbjct: 263 GKYNEAIKYFDKVLEINPNIPDAWNGKAI--ALEKLGKINEAI 303

>AP2A_YEAST (P38065) AP-2 complex subunit alpha (Alpha-adaptin) (Clathrin|
           assembly protein large alpha chain) (Clathrin assembly
           protein complex 2 alpha large chain)
          Length = 1025

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = -1

Query: 270 SMHQVLIFASPCRRTHIPSYTCHRQALPPLQDHMLY*LGEYSSLSIVAVPRMSLPTAFVE 91
           S+H++      C R  +  Y C +QA   +     + LGEYSSL    +   +L T F E
Sbjct: 536 SLHRIT-----CER--LVDYLCKKQASEAIIKAAAFLLGEYSSLITDRISSANLFTLFAE 588

Query: 90  RKHSKPH 70
           +  S P+
Sbjct: 589 KYFSAPN 595

>GAK2_HUMAN (Q7LDI9) HERV-K_7p22.1 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K(HML-2.HOM) Gag protein) (HERV-K108
           Gag protein) (HERV-K(C7) Gag protein) [Contains: Matrix
           protein; Capsid protein; Nucleocapsid protein]
          Length = 665

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 30/115 (26%), Positives = 48/115 (41%)
 Frame = +3

Query: 240 VKQKSIPGALNYKVLVNALWREGKIDEAVMAVKDMENRGIVGSASLYYDLARCLCSGGRC 419
           V QKSI      KV+V  +  E    E   A+K ++ +   GS  +   +  C   GG  
Sbjct: 460 VAQKSIADEKARKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYVKACDGIGGAM 519

Query: 420 KEALLQVEKICKVANKPLVVTYTGLIQICIDSGSIENAKYIFKEMCNYCSPNNVT 584
            +A+L  + I  V     V T+    + C + G I +     K+ C   +  N+T
Sbjct: 520 HKAMLMAQAITGVVLGGQVRTFG---RKCYNCGQIGH----LKKNCPVLNKQNIT 567

>SYT_CHLPN (Q9Z7A0) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 635

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = -1

Query: 249 FASPCRRTHIPSYTCHRQALPPLQDHMLY*LGEYSSLSIVAVPRMSLPTAFVERKH 82
           F   CR  H+PS T H +A   L+    Y  G+ S  S+V +   S PT+   R H
Sbjct: 172 FFDLCRGPHLPS-TAHVKAFKVLRTSAAYWRGDPSRESLVRIYGTSFPTSKELRAH 226

>SYFB_THETN (Q8R9C7) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 794

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
 Frame = +3

Query: 51  PDLIVYNAVLNACVQQKQWEGTFWVLQQLKEKNIRPTNTTYGLVMEVMLVCGKYNLVYEF 230
           PDL  Y  V       K      W+  +L +  IRP N    +   VML  G+    ++ 
Sbjct: 214 PDLC-YRYVARVVKNVKIGPSPIWMQVRLLKAGIRPINNVVDVTNYVMLELGQPLHAFD- 271

Query: 231 FDRVKQKSI--PGALNYKVLVNALWREGKIDEAVMAVKDMENR-GIVG 365
            D+VK K I    A + + LV    +E  +D +++ + D E   G+ G
Sbjct: 272 LDKVKNKHIIVRRARDGEKLVTLDGKERILDSSMLVIADEEKAIGLAG 319

>HIS8_BACTN (Q8ABA8) Histidinol-phosphate aminotransferase (EC 2.6.1.9)|
           (Imidazole acetol-phosphate transaminase)
          Length = 346

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 18/81 (22%)
 Frame = +3

Query: 426 ALLQVEKICKVANKPLVVTYTGLIQICIDSGSIENAKYIFKEMCNY-------------- 563
           A  + EK   VA  P   TY G+ Q+C D  ++E  K +  E   +              
Sbjct: 87  AFCEPEKDNVVAIDP---TY-GMYQVCADVNNVEYRKVLLDENFQFSAEKLLAATDERTK 142

Query: 564 ----CSPNNVTCNIMLKSYID 614
               CSPNN T N +L+S I+
Sbjct: 143 LIFLCSPNNPTGNDLLRSEIE 163

>YIEJ_ECOLI (P31469) Hypothetical UPF0167 protein yieJ|
          Length = 195

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 309 KIDEAVMAVKDMENRGIVGSASLYYDLARCLCSGGRCKEALLQ 437
           ++DE     +D EN GI  S     DLA+CL  GG C+  L +
Sbjct: 144 RLDEFANLEEDCENFGIRNS-----DLAKCLQKGGHCQGYLFR 181

>PMP12_CHLPN (Q9Z3D6) Probable outer membrane protein pmp12 precursor|
           (Polymorphic membrane protein 12) (Outer membrane
           protein 13)
          Length = 514

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
 Frame = -3

Query: 376 RLAEPTIPRFSISFTAMTASSIFPSLQSAFTR---TL*FNAPGIDFCFTLSKNSYTKLYL 206
           R+ + T+   + S+ A T++ + P  Q A       +  N+  + FC   S  S   +Y 
Sbjct: 108 RVGDTTLTLSNFSYLAFTSAPLLPQGQGAIYSLGSVMIENSEEVTFCGNYSSWSGAAIYT 167

Query: 205 PQTSITSITRPYVVLVGRIFFSF 137
           P    +  +RP V L G  +  F
Sbjct: 168 PYLLGSKASRPSVNLSGNRYLVF 190

>Y1284_METJA (Q58680) Hypothetical protein MJ1284 precursor|
          Length = 121

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +3

Query: 27  QNWDPRLEPDLIVYNAVLNACVQQKQWEGTFWVLQQLKEKNIRPTNTTYG 176
           QN+D  L  + I YNA+ +A ++    EG F  +  L +K   P+N  YG
Sbjct: 32  QNFDYNLSLEFIGYNALYSAHIE----EGDFENISSLYKKIELPSNVGYG 77

>PTCD1_PONPY (Q5R655) Pentatricopeptide repeat protein 1|
          Length = 698

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +3

Query: 36  DPRLEPDLIVYNAVLNACVQQKQWEGTFWVLQQLKEKNIRPTNTTYGLVMEV 191
           + RL+P    Y A++  C +    +  F +  Q+K++++ P++ TY  +  V
Sbjct: 164 EERLQPMESNYTALIGGCGRVGYLKKAFSLYNQMKKRDLEPSDATYTALFNV 215

>LEU12_METAC (Q8THA5) 2-isopropylmalate synthase 2 (EC 2.3.3.13)|
           (Alpha-isopropylmalate synthase 2) (Alpha-IPM synthetase
           2)
          Length = 515

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 17/78 (21%), Positives = 42/78 (53%)
 Frame = +3

Query: 303 EGKIDEAVMAVKDMENRGIVGSASLYYDLARCLCSGGRCKEALLQVEKICKVANKPLVVT 482
           E ++DE V+ +K++ N+G   + +  Y +A  +      +E L++++++  +     ++T
Sbjct: 355 ENQLDEIVLRIKEIANKGKQITDADLYAVASAVLGKASSEEELIKLKEVSVMTGN--ILT 412

Query: 483 YTGLIQICIDSGSIENAK 536
            T +++  I+   I  AK
Sbjct: 413 PTAVVKADIEGKEIIAAK 430

>MED31_YEAST (P38633) RNA polymerase II mediator complex subunit 31 (Hpr1|
           suppressor protein 1)
          Length = 127

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -2

Query: 197 KHYLHYKTICCISWANILLFQLLQYPECPFPLLLLNASIQNRIV 66
           K+YL Y       W N    Q + YP C F L LLN  +++ IV
Sbjct: 55  KNYLKYLEY----WCNPPYSQCIVYPNCLFILKLLNGFMESAIV 94

>YN18_YEAST (P53836) Hypothetical 118.3 kDa protein in ERG24-MET2 intergenic|
           region
          Length = 1060

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = +3

Query: 45  LEPDLIVYNAVLNACVQQKQWEGTFWVLQQLKEKN---IRPTNTTYGLVMEVMLVCGKYN 215
           + P+L+    +LNA   ++  EG F +LQ L        R     YG+++   L      
Sbjct: 58  VSPELVPILTLLNAHTHRRYHEGVFLILQDLNNNGTHAARKWKDVYGVLLGTQLALWDAK 117

Query: 216 LVYEFFD 236
            + EF D
Sbjct: 118 ELAEFTD 124


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,217,114
Number of Sequences: 219361
Number of extensions: 2180509
Number of successful extensions: 5820
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 5537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5808
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5767334219
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)