ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags18d02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467006.1| Oryza sativa (japonica cultivar-group), mRNA 165 2e-37
2dbj|AK068423.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 2e-37
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 119 8e-24
4dbj|AP005291.3| Oryza sativa (japonica cultivar-group) genomic D... 119 8e-24
5gb|AC018796.4|AC018796 Homo sapiens chromosome 8, clone RP11-51K... 44 0.39
6ref|XM_463556.1| Oryza sativa (japonica cultivar-group), predic... 42 1.5
7gb|AC121301.8| Mus musculus chromosome 7, clone RP23-432H1, comp... 42 1.5
8ref|XR_003811.1| PREDICTED: Mus musculus similar to High mobilit... 42 1.5
9ref|XR_002016.1| PREDICTED: Mus musculus similar to High mobilit... 42 1.5
10gb|AC129179.3| Mus musculus BAC clone RP23-240C24 from chromosom... 42 1.5
11emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.5
12emb|BX640431.1| Bordetella parapertussis strain 12822, complete ... 42 1.5
13dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
14gb|AF229199.1|AF229199 Oryza sativa chromosome 1 clone OSJNBa004... 42 1.5
15gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.5
16dbj|AP003379.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
17dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.5
18gb|AC171404.5| Mus musculus chromosome 7, clone RP24-235N21, com... 42 1.5
19ref|XM_480161.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.1
20ref|XM_463783.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.1
21ref|NM_196987.1| Oryza sativa (japonica cultivar-group) putative... 40 6.1
22ref|NM_196985.1| Oryza sativa (japonica cultivar-group) putative... 40 6.1
23ref|NM_196979.1| Oryza sativa (japonica cultivar-group) putative... 40 6.1
24ref|XM_469637.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.1
25gb|AY234384.1|AY234384S1 Rubrivivax gelatinosus strain S1 5' reg... 40 6.1
26gb|AC104280.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
27gb|AY545956.1| Synthetic construct Ch35.16 E1E2 region of HCV po... 40 6.1
28gb|AY545955.1| Synthetic construct Ch35.10 E1E2 region of HCV po... 40 6.1
29gb|AY545954.1| Synthetic construct Ch35.1 E1E2 region of HCV pol... 40 6.1
30gb|AE007195.1| Sinorhizobium meliloti 1021 plasmid pSymA section... 40 6.1
31gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.1
32ref|XM_806917.1| Trypanosoma cruzi strain CL Brener minichromoso... 40 6.1
33gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa... 40 6.1
34gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 6.1
35gb|AC078893.10| Oryza sativa chromosome 10 BAC OSJNBb0044B19 gen... 40 6.1
36gb|AC078948.11| Oryza sativa chromosome 10 BAC OSJNBa0001K12 gen... 40 6.1
37gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 6.1
38gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 6.1
39gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 genom... 40 6.1
40gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 6.1
41dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
42dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
43dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
44dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
45dbj|AP003905.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
46dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
47dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
48dbj|AK104023.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
49dbj|AK070191.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
50dbj|AK068443.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
51gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 6.1
52gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
53emb|AL844519.9| Mouse DNA sequence from clone RP23-250M11 on chr... 40 6.1
54dbj|AB034704.1| Rubrivivax gelatinosus photosynthetic gene clust... 40 6.1 
>ref|XM_467006.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1082

 Score =  165 bits (83), Expect = 2e-37
 Identities = 193/230 (83%)
 Strand = Plus / Plus

                                                                       
Query: 223 acgcagatctgaacaagtacgaggcggatcagaggggcgagttcggcatcggttcagccg 282
           |||| ||||| ||||||| ||||||||| ||| | || ||||||||||| || || || |
Sbjct: 278 acgcggatcttaacaagttcgaggcggagcagcgtggggagttcggcattggctccgctg 337

                                                                       
Query: 283 cgcagttcggcantgcggacctcaaaaacactgtgcatgttaacgaaaacttcaggcggg 342
           ||||||| ||    || |||||||| ||  | || |||||||| || |||||||||||||
Sbjct: 338 cgcagtttgggtcggccgacctcaagaaggccgtccatgttaatgagaacttcaggcggg 397

                                                                       
Query: 343 cgaacttcacatctgctgatatgagggaatcagattttagtggttccacattcaatggtg 402
           | ||||||||  |||||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct: 398 caaacttcactgctgctgatatgagggagtcaaatttcagtggttccacattcaatggtg 457

                                                             
Query: 403 cctatatggaaaaggctgttgctttcagagcgaatttcacaggtgcagat 452
           ||||| | ||||||||||||||||  ||||| ||||| || |||||||||
Sbjct: 458 cctatcttgaaaaggctgttgcttatagagcaaattttactggtgcagat 507
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>dbj|AK068423.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153L01, full
           insert sequence
          Length = 1081

 Score =  165 bits (83), Expect = 2e-37
 Identities = 193/230 (83%)
 Strand = Plus / Plus

                                                                       
Query: 223 acgcagatctgaacaagtacgaggcggatcagaggggcgagttcggcatcggttcagccg 282
           |||| ||||| ||||||| ||||||||| ||| | || ||||||||||| || || || |
Sbjct: 277 acgcggatcttaacaagttcgaggcggagcagcgtggggagttcggcattggctccgctg 336

                                                                       
Query: 283 cgcagttcggcantgcggacctcaaaaacactgtgcatgttaacgaaaacttcaggcggg 342
           ||||||| ||    || |||||||| ||  | || |||||||| || |||||||||||||
Sbjct: 337 cgcagtttgggtcggccgacctcaagaaggccgtccatgttaatgagaacttcaggcggg 396

                                                                       
Query: 343 cgaacttcacatctgctgatatgagggaatcagattttagtggttccacattcaatggtg 402
           | ||||||||  |||||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct: 397 caaacttcactgctgctgatatgagggagtcaaatttcagtggttccacattcaatggtg 456

                                                             
Query: 403 cctatatggaaaaggctgttgctttcagagcgaatttcacaggtgcagat 452
           ||||| | ||||||||||||||||  ||||| ||||| || |||||||||
Sbjct: 457 cctatcttgaaaaggctgttgcttatagagcaaattttactggtgcagat 506
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  119 bits (60), Expect = 8e-24
 Identities = 93/104 (89%)
 Strand = Plus / Plus

                                                                            
Query: 336      aggcgggcgaacttcacatctgctgatatgagggaatcagattttagtggttccacattc 395
                |||||||| ||||||||  |||||||||||||||| ||| |||| |||||||||||||||
Sbjct: 25875325 aggcgggcaaacttcactgctgctgatatgagggagtcaaatttcagtggttccacattc 25875384

                                                            
Query: 396      aatggtgcctatatggaaaaggctgttgctttcagagcgaattt 439
                |||||||||||| | ||||||||||||||||  ||||| |||||
Sbjct: 25875385 aatggtgcctatcttgaaaaggctgttgcttatagagcaaattt 25875428



 Score = 46.1 bits (23), Expect = 0.099
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                            
Query: 223      acgcagatctgaacaagtacgaggcggatcagaggggcgagttcggcatcggttcagccg 282
                |||| ||||| ||||||| ||||||||| ||| | || ||||||||||| || || || |
Sbjct: 25874411 acgcggatcttaacaagttcgaggcggagcagcgtggggagttcggcattggctccgctg 25874470

                       
Query: 283      cgcagtt 289
                |||||||
Sbjct: 25874471 cgcagtt 25874477



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 144    acgtcgccggcgccgccgaggtggcgcg 171
              |||||| ||||||||| |||||||||||
Sbjct: 113055 acgtcggcggcgccgcggaggtggcgcg 113028
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>dbj|AP005291.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1282_H11
          Length = 143314

 Score =  119 bits (60), Expect = 8e-24
 Identities = 93/104 (89%)
 Strand = Plus / Plus

                                                                         
Query: 336   aggcgggcgaacttcacatctgctgatatgagggaatcagattttagtggttccacattc 395
             |||||||| ||||||||  |||||||||||||||| ||| |||| |||||||||||||||
Sbjct: 26666 aggcgggcaaacttcactgctgctgatatgagggagtcaaatttcagtggttccacattc 26725

                                                         
Query: 396   aatggtgcctatatggaaaaggctgttgctttcagagcgaattt 439
             |||||||||||| | ||||||||||||||||  ||||| |||||
Sbjct: 26726 aatggtgcctatcttgaaaaggctgttgcttatagagcaaattt 26769



 Score = 46.1 bits (23), Expect = 0.099
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                         
Query: 223   acgcagatctgaacaagtacgaggcggatcagaggggcgagttcggcatcggttcagccg 282
             |||| ||||| ||||||| ||||||||| ||| | || ||||||||||| || || || |
Sbjct: 25752 acgcggatcttaacaagttcgaggcggagcagcgtggggagttcggcattggctccgctg 25811

                    
Query: 283   cgcagtt 289
             |||||||
Sbjct: 25812 cgcagtt 25818
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>gb|AC018796.4|AC018796 Homo sapiens chromosome 8, clone RP11-51K12, complete sequence
          Length = 148189

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 408   atggaaaaggctgttgctttcagagcgaatttca 441
             ||||||||||| || |||||||||| ||||||||
Sbjct: 47031 atggaaaaggcagtagctttcagagagaatttca 46998
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>ref|XM_463556.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1203

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 145 cgtcgccggcgccgccgaggt 165
           |||||||||||||||||||||
Sbjct: 937 cgtcgccggcgccgccgaggt 917
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>gb|AC121301.8| Mus musculus chromosome 7, clone RP23-432H1, complete sequence
          Length = 205639

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 307    aaaacactgtgcatgttaacgaaaa 331
              ||||||||||||||||||| |||||
Sbjct: 161571 aaaacactgtgcatgttaaagaaaa 161595
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>ref|XR_003811.1| PREDICTED: Mus musculus similar to High mobility group protein 1
           (HMG-1) (High mobility group protein B1) (Amphoterin)
           (Heparin-binding protein p30) (LOC545257), mRNA
          Length = 717

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 225 gcagatctgaacaagtacgag 245
           |||||||||||||||||||||
Sbjct: 521 gcagatctgaacaagtacgag 541
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>ref|XR_002016.1| PREDICTED: Mus musculus similar to High mobility group protein 1
           (HMG-1) (High mobility group protein B1) (Amphoterin)
           (Heparin-binding protein p30) (LOC545257), mRNA
          Length = 717

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 225 gcagatctgaacaagtacgag 245
           |||||||||||||||||||||
Sbjct: 521 gcagatctgaacaagtacgag 541
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>gb|AC129179.3| Mus musculus BAC clone RP23-240C24 from chromosome 18, complete sequence
          Length = 208462

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 225    gcagatctgaacaagtacgag 245
              |||||||||||||||||||||
Sbjct: 111448 gcagatctgaacaagtacgag 111468
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>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16
          Length = 348706

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 149    gccggcgccgccgaggtggcg 169
              |||||||||||||||||||||
Sbjct: 232345 gccggcgccgccgaggtggcg 232365
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>emb|BX640431.1| Bordetella parapertussis strain 12822, complete genome; segment 9/14
          Length = 347894

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 149   gccggcgccgccgaggtggcg 169
             |||||||||||||||||||||
Sbjct: 70281 gccggcgccgccgaggtggcg 70261
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 145      cgtcgccggcgccgccgaggt 165
                |||||||||||||||||||||
Sbjct: 38478062 cgtcgccggcgccgccgaggt 38478082
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>gb|AF229199.1|AF229199 Oryza sativa chromosome 1 clone OSJNBa0048I01, complete sequence
          Length = 193444

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 145   cgtcgccggcgccgccgaggt 165
             |||||||||||||||||||||
Sbjct: 71159 cgtcgccggcgccgccgaggt 71179
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 151    cggcgccgccgaggtggcgcg 171
              |||||||||||||||||||||
Sbjct: 830194 cggcgccgccgaggtggcgcg 830214
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>dbj|AP003379.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0408G07
          Length = 126631

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 145   cgtcgccggcgccgccgaggt 165
             |||||||||||||||||||||
Sbjct: 63477 cgtcgccggcgccgccgaggt 63497
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 143     tacgtcgccggcgccgccgag 163
               |||||||||||||||||||||
Sbjct: 3007383 tacgtcgccggcgccgccgag 3007363



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 146     gtcgccggcgccgccgaggt 165
               ||||||||||||||||||||
Sbjct: 6565066 gtcgccggcgccgccgaggt 6565047
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>gb|AC171404.5| Mus musculus chromosome 7, clone RP24-235N21, complete sequence
          Length = 146054

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 307    aaaacactgtgcatgttaacgaaaa 331
              ||||||||||||||||||| |||||
Sbjct: 127225 aaaacactgtgcatgttaaagaaaa 127201
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>ref|XM_480161.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 369

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 121 ccggcggcggcaatgcgtcg 140
           ||||||||||||||||||||
Sbjct: 50  ccggcggcggcaatgcgtcg 69
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>ref|XM_463783.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 885

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 144 acgtcgccggcgccgccgaggtggcgcg 171
           |||||| ||||||||| |||||||||||
Sbjct: 596 acgtcggcggcgccgcggaggtggcgcg 623
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>ref|NM_196987.1| Oryza sativa (japonica cultivar-group) putative oxidase
            (OSJNBb0044B19.5), mRNA
          Length = 1935

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 148  cgccggcgccgccgaggtgg 167
            ||||||||||||||||||||
Sbjct: 1413 cgccggcgccgccgaggtgg 1432
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>ref|NM_196985.1| Oryza sativa (japonica cultivar-group) putative alcohol oxidase
            (OSJNBa0001K12.5), mRNA
          Length = 1914

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 148  cgccggcgccgccgaggtgg 167
            ||||||||||||||||||||
Sbjct: 1554 cgccggcgccgccgaggtgg 1573
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>ref|NM_196979.1| Oryza sativa (japonica cultivar-group) putative alcohol oxidase
            (OSJNBa0001K12.13), mRNA
          Length = 2271

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 148  cgccggcgccgccgaggtgg 167
            ||||||||||||||||||||
Sbjct: 1848 cgccggcgccgccgaggtgg 1867
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>ref|XM_469637.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1057

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 148 cgccggcgccgccgaggtggcgcg 171
           ||||||||||||||||| ||||||
Sbjct: 531 cgccggcgccgccgaggcggcgcg 554
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>gb|AY234384.1|AY234384S1 Rubrivivax gelatinosus strain S1 5' region photosynthesis gene cluster,
             partial sequence
          Length = 24637

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 106   cgaccaccgaccgctccggcggcg 129
             |||||||||| |||||||||||||
Sbjct: 24578 cgaccaccgaacgctccggcggcg 24601
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>gb|AC104280.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1430_B02,
            complete sequence
          Length = 75456

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 145  cgtcgccggcgccgccgaggtggc 168
            |||||||| |||||||||||||||
Sbjct: 9173 cgtcgccgccgccgccgaggtggc 9196
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>gb|AY545956.1| Synthetic construct Ch35.16 E1E2 region of HCV polyprotein gene,
            complete cds
          Length = 1734

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 107  gaccaccgaccgctccggcg 126
            ||||||||||||||||||||
Sbjct: 1044 gaccaccgaccgctccggcg 1063
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>gb|AY545955.1| Synthetic construct Ch35.10 E1E2 region of HCV polyprotein gene,
            complete cds
          Length = 1734

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 107  gaccaccgaccgctccggcg 126
            ||||||||||||||||||||
Sbjct: 1044 gaccaccgaccgctccggcg 1063
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>gb|AY545954.1| Synthetic construct Ch35.1 E1E2 region of HCV polyprotein gene,
            complete cds
          Length = 1734

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 107  gaccaccgaccgctccggcg 126
            ||||||||||||||||||||
Sbjct: 1044 gaccaccgaccgctccggcg 1063
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>gb|AE007195.1| Sinorhizobium meliloti 1021 plasmid pSymA section 1 of 121 of the
            complete plasmid sequence
          Length = 11408

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 118  gctccggcggcggcaatgcg 137
            ||||||||||||||||||||
Sbjct: 6365 gctccggcggcggcaatgcg 6346
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 148      cgccggcgccgccgaggtggcgcg 171
                ||||||||||||||||| ||||||
Sbjct: 29912081 cgccggcgccgccgaggcggcgcg 29912104
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>ref|XM_806917.1| Trypanosoma cruzi strain CL Brener minichromosome maintenance (MCM)
           complex subunit (Tc00.1047053506933.40) partial mRNA
          Length = 2862

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 87  cagcgcatctcctgccaggcgacc 110
           |||||||||| |||||||||||||
Sbjct: 258 cagcgcatctactgccaggcgacc 235
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>gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa0084L17, complete
             sequence
          Length = 159661

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 148   cgccggcgccgccgaggtggcgcg 171
             ||||||||||||||||| ||||||
Sbjct: 98525 cgccggcgccgccgaggcggcgcg 98502
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 113     cgaccgctccggcggcggca 132
               ||||||||||||||||||||
Sbjct: 2308954 cgaccgctccggcggcggca 2308973
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>gb|AC078893.10| Oryza sativa chromosome 10 BAC OSJNBb0044B19 genomic sequence, complete
             sequence
          Length = 81784

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   cgccggcgccgccgaggtgg 167
             ||||||||||||||||||||
Sbjct: 79396 cgccggcgccgccgaggtgg 79415
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>gb|AC078948.11| Oryza sativa chromosome 10 BAC OSJNBa0001K12 genomic sequence, complete
             sequence
          Length = 144724

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   cgccggcgccgccgaggtgg 167
             ||||||||||||||||||||
Sbjct: 87690 cgccggcgccgccgaggtgg 87709



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   cgccggcgccgccgaggtgg 167
             ||||||||||||||||||||
Sbjct: 33562 cgccggcgccgccgaggtgg 33581



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   cgccggcgccgccgaggtgg 167
             ||||||||||||||||||||
Sbjct: 24132 cgccggcgccgccgaggtgg 24151
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 145    cgtcgccggcgccgccgagg 164
              ||||||||||||||||||||
Sbjct: 710838 cgtcgccggcgccgccgagg 710857
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 250     atcagaggggcgagttcggcatcg 273
               |||||||||||||| |||||||||
Sbjct: 1610092 atcagaggggcgaggtcggcatcg 1610069
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>gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 genomic sequence, complete
             sequence
          Length = 139946

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 148   cgccggcgccgccgaggtggcgcg 171
             ||||||||||||||||| ||||||
Sbjct: 78022 cgccggcgccgccgaggcggcgcg 78045
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 146     gtcgccggcgccgccgaggt 165
               ||||||||||||||||||||
Sbjct: 1753053 gtcgccggcgccgccgaggt 1753072
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 148      cgccggcgccgccgaggtgg 167
                ||||||||||||||||||||
Sbjct: 17168204 cgccggcgccgccgaggtgg 17168185



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 148      cgccggcgccgccgaggtgg 167
                ||||||||||||||||||||
Sbjct: 17158774 cgccggcgccgccgaggtgg 17158755



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 148      cgccggcgccgccgaggtgg 167
                ||||||||||||||||||||
Sbjct: 17104646 cgccggcgccgccgaggtgg 17104627
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 121     ccggcggcggcaatgcgtcg 140
               ||||||||||||||||||||
Sbjct: 3169609 ccggcggcggcaatgcgtcg 3169590
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 145     cgtcgccggcgccgccgaggtggc 168
               |||||||| |||||||||||||||
Sbjct: 6571119 cgtcgccgccgccgccgaggtggc 6571142
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 148      cgccggcgccgccgaggtggcgcg 171
                ||||||||||||||||| ||||||
Sbjct: 30003503 cgccggcgccgccgaggcggcgcg 30003526
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>dbj|AP003905.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1177_E11
          Length = 92375

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   ccggcggcggcaatgcgtcg 140
             ||||||||||||||||||||
Sbjct: 25689 ccggcggcggcaatgcgtcg 25670
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>dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:B1370C05
          Length = 148271

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 144    acgtcgccggcgccgccgaggtggcgcg 171
              |||||| ||||||||| |||||||||||
Sbjct: 107664 acgtcggcggcgccgcggaggtggcgcg 107637
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>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1435_F07
          Length = 139041

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 144   acgtcgccggcgccgccgaggtggcgcg 171
             |||||| ||||||||| |||||||||||
Sbjct: 62082 acgtcggcggcgccgcggaggtggcgcg 62055
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>dbj|AK104023.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-B05, full
           insert sequence
          Length = 745

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 145 cgtcgccggcgccgccgaggtggc 168
           |||||||| |||||||||||||||
Sbjct: 339 cgtcgccgccgccgccgaggtggc 316
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>dbj|AK070191.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042J24, full
           insert sequence
          Length = 880

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 145 cgtcgccggcgccgccgaggtggc 168
           |||||||| |||||||||||||||
Sbjct: 340 cgtcgccgccgccgccgaggtggc 317
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>dbj|AK068443.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153J23, full
           insert sequence
          Length = 772

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 148 cgccggcgccgccgaggtggcgcg 171
           ||||||||||||||||| ||||||
Sbjct: 264 cgccggcgccgccgaggcggcgcg 287
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 192    gcggctgccgtagtcgtagc 211
              ||||||||||||||||||||
Sbjct: 258598 gcggctgccgtagtcgtagc 258617
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 148      cgccggcgccgccgaggtgg 167
                ||||||||||||||||||||
Sbjct: 17177244 cgccggcgccgccgaggtgg 17177225



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 148      cgccggcgccgccgaggtgg 167
                ||||||||||||||||||||
Sbjct: 17167814 cgccggcgccgccgaggtgg 17167795



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 148      cgccggcgccgccgaggtgg 167
                ||||||||||||||||||||
Sbjct: 17113686 cgccggcgccgccgaggtgg 17113667
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>emb|AL844519.9| Mouse DNA sequence from clone RP23-250M11 on chromosome 2, complete
              sequence
          Length = 183051

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 377    ttttagtggttccacattca 396
              ||||||||||||||||||||
Sbjct: 101322 ttttagtggttccacattca 101303
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>dbj|AB034704.1| Rubrivivax gelatinosus photosynthetic gene cluster, complete cds,
             stain:IL144
          Length = 58996

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 106   cgaccaccgaccgctccggcggcg 129
             |||||||||| |||||||||||||
Sbjct: 33926 cgaccaccgaacgctccggcggcg 33949


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,894,586
Number of Sequences: 3902068
Number of extensions: 2894586
Number of successful extensions: 65560
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63855
Number of HSP's gapped (non-prelim): 1703
length of query: 452
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 430
effective length of database: 17,147,199,772
effective search space: 7373295901960
effective search space used: 7373295901960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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