ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags18c18 |
|---|---|
| Clone Library Name | barley_pub |
>LCYE_LYCES (O65837) Lycopene epsilon cyclase, chloroplast precursor (EC| 1.14.-.-) Length = 526 Score = 192 bits (487), Expect = 4e-49 Identities = 98/141 (69%), Positives = 112/141 (79%) Frame = +1 Query: 19 EEANPTFXYAMAXSSTRVFFEETCLASKDAMPFDLLKKRLMSRLDAMGVRILKVYEEEWX 198 E PTF YAM S TRVFFEETCLASKDAMPFDLLKK+LM RL+ +GVRI ++YEEEW Sbjct: 297 EAKYPTFLYAMPMSPTRVFFEETCLASKDAMPFDLLKKKLMLRLNTLGVRIKEIYEEEWS 356 Query: 199 YIPVGGSLPNTDQKNLAFGAAXSMVHPATGYSVVRSLSEAPRYAXVISDILGNRVYSGQY 378 YIPVGGSLPNT+QK LAFGAA SMVHPATGYSVVRSLSEAP+ A V+++IL R + + Sbjct: 357 YIPVGGSLPNTEQKTLAFGAAASMVHPATGYSVVRSLSEAPKCASVLANIL--RQHYSKN 414 Query: 379 LPGSSEMSSPSMLAWGTLWPQ 441 + SS + S S AW TLWPQ Sbjct: 415 MLTSSSIPSISTQAWNTLWPQ 435
>LCYE_ARATH (Q38932) Lycopene epsilon cyclase, chloroplast precursor (EC| 1.14.-.-) Length = 524 Score = 187 bits (475), Expect = 1e-47 Identities = 96/146 (65%), Positives = 107/146 (73%) Frame = +1 Query: 1 EKFSHPEEANPTFXYAMAXSSTRVFFEETCLASKDAMPFDLLKKRLMSRLDAMGVRILKV 180 EK E PTF YAM + +R+FFEETCLASKD MPFDLLK +LM RLD +G+RILK Sbjct: 294 EKVRSLEAEYPTFLYAMPMTKSRLFFEETCLASKDVMPFDLLKTKLMLRLDTLGIRILKT 353 Query: 181 YEEEWXYIPVGGSLPNTDQKNLAFGAAXSMVHPATGYSVVRSLSEAPRYAXVISDILGNR 360 YEEEW YIPVGGSLPNT+QKNLAFGAA SMVHPATGYSVVRSLSEAP+YA VI++IL Sbjct: 354 YEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAEILREE 413 Query: 361 VYSGQYLPGSSEMSSPSMLAWGTLWP 438 S+ S AW TLWP Sbjct: 414 T-------TKQINSNISRQAWDTLWP 432
>LCYB_LYCES (Q43503) Lycopene beta cyclase, chloroplast precursor (EC 1.14.-.-)| Length = 500 Score = 102 bits (253), Expect = 6e-22 Identities = 54/137 (39%), Positives = 79/137 (57%), Gaps = 1/137 (0%) Frame = +1 Query: 31 PTFXYAMAXSSTRVFFEETCLASKDAMPFDLLKKRLMSRLDAMGVRILKVYEEEWXYIPV 210 PTF YAM SS R+F EET L ++ + D +++R+++RL+ +G+++ + E+E IP+ Sbjct: 281 PTFLYAMPFSSNRIFLEETSLVARPGLRIDDIQERMVARLNHLGIKVKSIEEDEHCLIPM 340 Query: 211 GGSLPNTDQKNLAFGAAXSMVHPATGYSVVRSLSEAPRYAXVISDILGN-RVYSGQYLPG 387 GG LP Q+ + G MVHP+TGY V R+L+ AP A I LG+ R +SG L Sbjct: 341 GGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVANAIIQYLGSERSHSGNEL-- 398 Query: 388 SSEMSSPSMLAWGTLWP 438 S W LWP Sbjct: 399 -------STAVWKDLWP 408
>LCYB_NARPS (Q40424) Lycopene beta cyclase, chloroplast precursor (EC 1.14.-.-)| Length = 503 Score = 99.4 bits (246), Expect = 4e-21 Identities = 54/138 (39%), Positives = 80/138 (57%), Gaps = 2/138 (1%) Frame = +1 Query: 31 PTFXYAMAXSSTRVFFEETCLASKDAMPFDLLKKRLMSRLDAMGVRILKVYEEEWXYIPV 210 PTF YAM SS R+F EET L ++ + + +++R+++RL+ +G+RI + E+E IP+ Sbjct: 284 PTFLYAMPFSSNRIFLEETSLVARPGLKMEDIQERMVARLNHLGIRIKSIEEDERCVIPM 343 Query: 211 GGSLPNTDQKNLAFGAAXSMVHPATGYSVVRSLSEAPRYAXVISDILGNRVYSGQYLPGS 390 GG LP Q+ + G MVHP+TGY V R+L+ AP I+ N + QYL Sbjct: 344 GGPLPVIPQRVVGIGGTAGMVHPSTGYMVARTLAAAP--------IVANSIV--QYLVSD 393 Query: 391 SEMSSPSMLA--WGTLWP 438 S +S + A W LWP Sbjct: 394 SGLSGNDLSADVWKDLWP 411
>CCS_CITSI (Q9SEA0) Capsanthin/capsorubin synthase, chloroplast precursor (EC| 5.3.99.8) Length = 503 Score = 99.4 bits (246), Expect = 4e-21 Identities = 54/137 (39%), Positives = 76/137 (55%), Gaps = 1/137 (0%) Frame = +1 Query: 31 PTFXYAMAXSSTRVFFEETCLASKDAMPFDLLKKRLMSRLDAMGVRILKVYEEEWXYIPV 210 PTF YAM S VF EET L S+ + + +K R+ +RL MG+R+ +V E+E IP+ Sbjct: 284 PTFLYAMPFDSNLVFLEETSLVSRPVLSYKEVKSRMAARLRHMGIRVKRVIEDEKCLIPM 343 Query: 211 GGSLPNTDQKNLAFGAAXSMVHPATGYSVVRSLSEAPRYAXVISDILGN-RVYSGQYLPG 387 GG LP Q +A G ++HPATGY V R+++ AP A I++ LG+ R+ G+ L Sbjct: 344 GGPLPVIPQSVMAIGGTSGLIHPATGYMVARTMALAPALADAIAECLGSTRMIRGRPL-- 401 Query: 388 SSEMSSPSMLAWGTLWP 438 W LWP Sbjct: 402 -------HQKVWNGLWP 411
>LCYB_CAPAN (Q43415) Lycopene beta cyclase, chloroplast precursor (EC 1.14.-.-)| Length = 498 Score = 99.4 bits (246), Expect = 4e-21 Identities = 53/137 (38%), Positives = 77/137 (56%), Gaps = 1/137 (0%) Frame = +1 Query: 31 PTFXYAMAXSSTRVFFEETCLASKDAMPFDLLKKRLMSRLDAMGVRILKVYEEEWXYIPV 210 PTF YAM SS R+F EET L ++ + D +++R+++RL +G+++ + E+E IP+ Sbjct: 279 PTFLYAMPFSSNRIFLEETSLVARPGLGMDDIQERMVARLSHLGIKVKSIEEDEHCVIPM 338 Query: 211 GGSLPNTDQKNLAFGAAXSMVHPATGYSVVRSLSEAPRYAXVISDILGN-RVYSGQYLPG 387 GG LP Q+ + G MVHP+TGY V R+L+ AP A I L + R +SG L Sbjct: 339 GGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVANAIIQYLSSERSHSGDEL-- 396 Query: 388 SSEMSSPSMLAWGTLWP 438 S W LWP Sbjct: 397 -------SAAVWKDLWP 406
>LCYB_ARATH (Q38933) Lycopene beta cyclase, chloroplast precursor (EC 1.14.-.-)| Length = 501 Score = 97.1 bits (240), Expect = 2e-20 Identities = 56/150 (37%), Positives = 83/150 (55%), Gaps = 7/150 (4%) Frame = +1 Query: 10 SHPE--EAN---PTFXYAMAXSSTRVFFEETCLASKDAMPFDLLKKRLMSRLDAMGVRIL 174 S+PE E N PTF YAM SS R+F EET L ++ + + +++R+ +RL +G+ + Sbjct: 268 SYPELKERNSKIPTFLYAMPFSSNRIFLEETSLVARPGLRMEDIQERMAARLKHLGINVK 327 Query: 175 KVYEEEWXYIPVGGSLPNTDQKNLAFGAAXSMVHPATGYSVVRSLSEAPRYAXVISDILG 354 ++ E+E IP+GG LP Q+ + G MVHP+TGY V R+L+ AP A I LG Sbjct: 328 RIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRYLG 387 Query: 355 NRVYSGQYLPGSSEMSSPSMLA--WGTLWP 438 + P S+ + + A W LWP Sbjct: 388 S--------PSSNSLRGDQLSAEVWRDLWP 409
>LCYB_TOBAC (Q43578) Lycopene beta cyclase, chloroplast precursor (EC 1.14.-.-)| Length = 500 Score = 96.7 bits (239), Expect = 2e-20 Identities = 53/136 (38%), Positives = 82/136 (60%) Frame = +1 Query: 31 PTFXYAMAXSSTRVFFEETCLASKDAMPFDLLKKRLMSRLDAMGVRILKVYEEEWXYIPV 210 PTF YAM SS ++F EET L ++ + D +++R+++RL+ +G+++ + E+E IP+ Sbjct: 281 PTFLYAMPFSSNKIFLEETSLVARPGLRMDDIQERMVARLNHLGIKVKSIEEDEHCVIPM 340 Query: 211 GGSLPNTDQKNLAFGAAXSMVHPATGYSVVRSLSEAPRYAXVISDILGNRVYSGQYLPGS 390 GGSLP Q+ + G +VHP+TGY V R+L+ AP A I LG S + L G Sbjct: 341 GGSLPVIPQRVVGTGGTAGLVHPSTGYMVARTLAAAPVVANAIIHYLG----SEKDLLG- 395 Query: 391 SEMSSPSMLAWGTLWP 438 +E+S+ W LWP Sbjct: 396 NELSA---AVWKDLWP 408
>LCYB_SYNP7 (Q55276) Lycopene beta cyclase (EC 1.14.-.-)| Length = 411 Score = 90.5 bits (223), Expect = 2e-18 Identities = 56/143 (39%), Positives = 72/143 (50%), Gaps = 2/143 (1%) Frame = +1 Query: 16 PEEAN--PTFXYAMAXSSTRVFFEETCLASKDAMPFDLLKKRLMSRLDAMGVRILKVYEE 189 PEE PTF YAM + F EET LA+ A+P+D LK+RL RL GV + + E Sbjct: 187 PEERQLPPTFLYAMDLGNDVYFVEETSLAACPAIPYDRLKQRLYQRLATRGVTVQVIQHE 246 Query: 190 EWXYIPVGGSLPNTDQKNLAFGAAXSMVHPATGYSVVRSLSEAPRYAXVISDILGNRVYS 369 E+ P+ LP+ Q + FG A SMVHPA+GY V L AP L N + + Sbjct: 247 EYCLFPMNLPLPDLTQSVVGFGGAASMVHPASGYMVGALLRRAPD--------LANAIAA 298 Query: 370 GQYLPGSSEMSSPSMLAWGTLWP 438 G S + + AW LWP Sbjct: 299 GLNASSSLTTAELATQAWRGLWP 321
>CCS_CAPAN (Q42435) Capsanthin/capsorubin synthase, chloroplast precursor (EC| 5.3.99.8) Length = 498 Score = 89.7 bits (221), Expect = 3e-18 Identities = 52/139 (37%), Positives = 73/139 (52%), Gaps = 3/139 (2%) Frame = +1 Query: 31 PTFXYAMAXSSTRVFFEETCLASKDAMPFDLLKKRLMSRLDAMGVRILKVYEEEWXYIPV 210 PTF YAM VF EET L S+ + + +K+R+++RL +G+++ V EEE I + Sbjct: 279 PTFLYAMPFDRNLVFLEETSLVSRPMLSYMEVKRRMVARLRHLGIKVRSVLEEEKCVITM 338 Query: 211 GGSLPNTDQKNLAFGAAXSMVHPATGYSVVRSLSEAPRYAXVISDILGNRVYSGQYLPGS 390 GG LP Q +A G +VHP++GY V RS++ AP A I + L GS Sbjct: 339 GGPLPRIPQNVMAIGGTSGIVHPSSGYMVARSMALAPVLAEAIVESL-----------GS 387 Query: 391 SEMSSPSML---AWGTLWP 438 + M S L W LWP Sbjct: 388 TRMIRGSQLYHRVWNGLWP 406
>Y801_DEIRA (Q9RW68) Putative carotenoid cyclase DR0801| Length = 410 Score = 69.3 bits (168), Expect = 4e-12 Identities = 41/106 (38%), Positives = 54/106 (50%) Frame = +1 Query: 34 TFXYAMAXSSTRVFFEETCLASKDAMPFDLLKKRLMSRLDAMGVRILKVYEEEWXYIPVG 213 TF YAM R F EET L ++ A L++RL++RL A G EEW P+ Sbjct: 195 TFLYAMHLGGDRYFVEETSLIARPAPTRAELRRRLLARLSAQGTPPHATESEEWVAFPMN 254 Query: 214 GSLPNTDQKNLAFGAAXSMVHPATGYSVVRSLSEAPRYAXVISDIL 351 P LA+GAA VHP +G+ V +LS+AP A I+ L Sbjct: 255 AQAP-APGGVLAYGAAAGRVHPVSGFQVAGALSDAPGVATAIATAL 299
>CRTY_PANAN (P21687) Lycopene cyclase| Length = 382 Score = 34.7 bits (78), Expect = 0.11 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 4/104 (3%) Frame = +1 Query: 37 FXYAMAXSSTRVFFEETCLASKDAMPFDLLKKRLMSRLDAMGVRILKVYEEEWXYIPV-- 210 F Y++ S TR+ E+T + + ++ + G ++ + EE +P+ Sbjct: 185 FVYSLPLSPTRLLIEDTHYIDNATLDPECARQNICDYAAQQGWQLQTLLREEQGALPITL 244 Query: 211 -GGSLPNTDQKNLAF-GAAXSMVHPATGYSVVRSLSEAPRYAXV 336 G + Q+ LA G + HP TGYS+ +++ A R + + Sbjct: 245 SGNADAFWQQRPLACSGLRAGLFHPTTGYSLPLAVAVADRLSAL 288
>PEX6_RAT (P54777) Peroxisome assembly factor 2 (PAF-2) (Peroxisomal-type| ATPase 1) (Peroxin-6) (Peroxisomal biogenesis factor 6) Length = 978 Score = 31.2 bits (69), Expect = 1.2 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 5/38 (13%) Frame = +1 Query: 151 DAMGV-----RILKVYEEEWXYIPVGGSLPNTDQKNLA 249 DA+GV R L +++ EW ++ G LPNT Q +LA Sbjct: 203 DALGVSRSCLRSLGLFQGEWVWVARVGELPNTSQPHLA 240
>CENG3_MOUSE (Q8VHH5) Centaurin-gamma 3 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 3) (AGAP-3) (MR1-interacting protein) (MRIP-1) (CRAM-associated GTPase) (CRAG) Length = 910 Score = 29.6 bits (65), Expect = 3.5 Identities = 21/68 (30%), Positives = 31/68 (45%) Frame = +1 Query: 217 SLPNTDQKNLAFGAAXSMVHPATGYSVVRSLSEAPRYAXVISDILGNRVYSGQYLPGSSE 396 S+ +TDQ + A SM HPA+G SLS +P+ S + + G+ G+ Sbjct: 534 SVSSTDQWSEAAALPASMQHPASG--PAESLSSSPKLEPPPSPHSNRKKHRGKKSTGTPR 591 Query: 397 MSSPSMLA 420 PS A Sbjct: 592 PDGPSSAA 599
>E2AK3_MOUSE (Q9Z2B5) Eukaryotic translation initiation factor 2-alpha kinase 3| precursor (EC 2.7.11.1) (PRKR-like endoplasmic reticulum kinase) (Pancreatic eIF2-alpha kinase) Length = 1114 Score = 29.3 bits (64), Expect = 4.5 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Frame = +1 Query: 229 TDQKNLAFGAAXSMVHPATGYSVVRSLSEAPRYAXVISDILGNRVYSGQYLPGSS--EMS 402 TD +NL F + +P V LS +P +DI+ N ++ PG + Sbjct: 1030 TDVRNLKFPLLFTQKYPQEHMMVQDMLSPSPTERPEATDIIENAIFENLEFPGKTVLRQR 1089 Query: 403 SPSMLAWGT 429 S SM + GT Sbjct: 1090 SRSMSSSGT 1098
>FAND_ECOLI (P12050) Outer membrane usher protein fanD precursor| Length = 783 Score = 28.9 bits (63), Expect = 5.9 Identities = 16/57 (28%), Positives = 32/57 (56%) Frame = +1 Query: 82 ETCLASKDAMPFDLLKKRLMSRLDAMGVRILKVYEEEWXYIPVGGSLPNTDQKNLAF 252 ET + + A+ +K + MSR +LKVY++ IP+G ++ N++ + ++F Sbjct: 690 ETIVPTNRAIKLQKIKYKNMSR------HVLKVYDKNGFVIPMGTAVKNSNGEIISF 740
>YO022_YEAST (P25040) Protein YOL022C| Length = 408 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -1 Query: 412 LMDWTFQNFQANIVQNRHDFLRYQISXKHILELQTKI 302 L D TFQ FQ + N LRY + K +L +TK+ Sbjct: 293 LDDDTFQKFQEVVGYNPLQVLRYDLGGKPLLYAETKV 329
>AROC_ZYMMO (Q5NLU3) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 358 Score = 28.5 bits (62), Expect = 7.7 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%) Frame = +1 Query: 91 LASKDAMPFDLLKKRLMSRL-----DAMGVRILK-VYEEEWXYIPVGGSLPNTDQKNLAF 252 L+ KD PF +K SR +A V+IL V+E P+ + NTDQ++ + Sbjct: 36 LSEKDIQPFLDRRKPGSSRFTTQRREADAVKILSGVFEGRTTGTPISLMIENTDQRSRDY 95 Query: 253 GAAXSMVHPATG 288 PA G Sbjct: 96 SNVAQQYRPAHG 107
>E2AK3_RAT (Q9Z1Z1) Eukaryotic translation initiation factor 2-alpha kinase 3| precursor (EC 2.7.11.1) (PRKR-like endoplasmic reticulum kinase) (Pancreatic eIF2-alpha kinase) Length = 1108 Score = 28.5 bits (62), Expect = 7.7 Identities = 17/61 (27%), Positives = 26/61 (42%) Frame = +1 Query: 229 TDQKNLAFGAAXSMVHPATGYSVVRSLSEAPRYAXVISDILGNRVYSGQYLPGSSEMSSP 408 TD +NL F + +P V LS +P +DI+ N V+ PG + + Sbjct: 1024 TDVRNLKFPPLFTQKYPQEHMMVQDMLSPSPMERPEATDIIENAVFENLEFPGKTVLRQR 1083 Query: 409 S 411 S Sbjct: 1084 S 1084 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.131 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,497,441 Number of Sequences: 219361 Number of extensions: 1380487 Number of successful extensions: 3103 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3051 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3098 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
