ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags18c09 |
|---|---|
| Clone Library Name | barley_pub |
>APH1_ARATH (Q8L9G7) Gamma-secretase subunit APH1-like| Length = 250 Score = 280 bits (716), Expect = 3e-75 Identities = 128/219 (58%), Positives = 171/219 (78%) Frame = +2 Query: 2 PRAVLTLLSSTLFWLISLIVLSGIWRGFLPLKSGLWWPYVILILTSVAFQEGIRLVFWRL 181 P +LT+LSSTL WL+SLI+LSG+WR FLPLK+ +WWPY +L++TSV FQEG+R +FW++ Sbjct: 29 PFLILTVLSSTLLWLVSLIILSGLWRPFLPLKANVWWPYALLVITSVCFQEGLRFLFWKV 88 Query: 182 YKKMEEMLDAFADRISKPRLCLTDKMLISXXXXXXXXXXXXVFFCLSLLTPAFGRATFYV 361 YK++E++LD+FADRIS+PRL LTDK+ I+ VFFCLSLLTPAFG ATFYV Sbjct: 89 YKRLEDVLDSFADRISRPRLFLTDKLQIALAGGLGHGVAHAVFFCLSLLTPAFGPATFYV 148 Query: 362 ERCSRMPFFLVSAIISLGFLVIHTSSMIIAFNGYGERKKRDQIFVPVVHLIAAVMTLINL 541 ERCS++PFFL+SAII+L F+ IHT SM+IAF GY + K DQI VPV+HL A ++TL+N Sbjct: 149 ERCSKVPFFLISAIIALAFVTIHTFSMVIAFEGYAKGNKVDQIIVPVIHLTAGMLTLVNF 208 Query: 542 VPGGCLIGTPLLCVTAAMTLYHSWRVVGQRITEQQHRQS 658 GC+IG PLL + A++TL H ++V QR+ E +++ S Sbjct: 209 ASEGCVIGVPLLYLVASLTLVHCGKMVWQRLLESRNQSS 247
>APH1_DROME (Q9VQG2) Gamma-secretase subunit Aph-1 (Presenilin-stabilization| factor) Length = 238 Score = 68.2 bits (165), Expect = 2e-11 Identities = 48/180 (26%), Positives = 89/180 (49%), Gaps = 1/180 (0%) Frame = +2 Query: 2 PRAVLTLLSSTLFWLISLIVLSGIWRGFLPLKSGLWWPYVILILTSVAFQEGIRLVFWRL 181 P ++ L+++ FWL+SL++ S +W +PLK L + V SV FQE R + +R+ Sbjct: 29 PVRIIILIAAAFFWLLSLLI-SSLWYALIPLKEFLAFGVVF----SVCFQEAFRYIIYRI 83 Query: 182 YKKMEEMLDAFADRISKPRLCLTD-KMLISXXXXXXXXXXXXVFFCLSLLTPAFGRATFY 358 + E+ L A A+ +TD K +++ +F +++L G T Sbjct: 84 LRSTEQGLHAVAEDTR-----VTDNKHILAYVSGLGFGIISGMFALVNVLADMSGPGTMG 138 Query: 359 VERCSRMPFFLVSAIISLGFLVIHTSSMIIAFNGYGERKKRDQIFVPVVHLIAAVMTLIN 538 ++ + + FF+ SA +L +++HT +I FN + +V HL +++TL+N Sbjct: 139 LKGGTEL-FFVTSAAQALSIILLHTFWSVIFFNAFDTNNYIHIGYVVFSHLFVSLITLLN 197
>APH1B_PONPY (Q5RDM3) Gamma-secretase subunit APH-1B (APH-1b) (Aph-1beta)| Length = 257 Score = 64.3 bits (155), Expect = 3e-10 Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 5/184 (2%) Frame = +2 Query: 2 PRAVLTLLSSTLFWLISLIVLSGIW---RGFLPLKSGLWWPYVILILT--SVAFQEGIRL 166 P ++ L++ FWL+SL++ S +W R + K G Y+++ T SV QE R Sbjct: 29 PLRIIFLIAGAFFWLVSLLISSLVWFMARVIIDNKDGPTQKYLLIFGTFVSVYIQEMFRF 88 Query: 167 VFWRLYKKMEEMLDAFADRISKPRLCLTDKMLISXXXXXXXXXXXXVFFCLSLLTPAFGR 346 ++RL KK E L + + P + L++ VF ++ L+ + G Sbjct: 89 AYYRLLKKASEGLKSINPGETAPSM-----RLLAYVSGLGFGIMSGVFSFVNTLSDSLGP 143 Query: 347 ATFYVERCSRMPFFLVSAIISLGFLVIHTSSMIIAFNGYGERKKRDQIFVPVVHLIAAVM 526 T + S FFL SA ++L +++H I+ F+G ++K + V + HL+ + Sbjct: 144 GTVGIHGDSPQ-FFLYSAFMTLVIILLHVFWGIVFFDGCEKKKWGILLIVLLTHLLVSAQ 202 Query: 527 TLIN 538 T I+ Sbjct: 203 TFIS 206
>APH1B_HUMAN (Q8WW43) Gamma-secretase subunit APH-1B (APH-1b) (Aph-1beta)| (Presenilin-stabilization factor-like) Length = 257 Score = 62.8 bits (151), Expect = 9e-10 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 5/184 (2%) Frame = +2 Query: 2 PRAVLTLLSSTLFWLISLIVLSGIW---RGFLPLKSGLWWPYVILI--LTSVAFQEGIRL 166 P ++ L++ FWL+SL++ S +W R + K G Y+++ SV QE R Sbjct: 29 PLRIIFLIAGAFFWLVSLLISSLVWFMARVIIDNKDGPTQKYLLIFGAFVSVYIQEMFRF 88 Query: 167 VFWRLYKKMEEMLDAFADRISKPRLCLTDKMLISXXXXXXXXXXXXVFFCLSLLTPAFGR 346 +++L KK E L + + P + L++ VF ++ L+ + G Sbjct: 89 AYYKLLKKASEGLKSINPGETAPSM-----RLLAYVSGLGFGIMSGVFSFVNTLSDSLGP 143 Query: 347 ATFYVERCSRMPFFLVSAIISLGFLVIHTSSMIIAFNGYGERKKRDQIFVPVVHLIAAVM 526 T + S FFL SA ++L +++H I+ F+G ++K + V + HL+ + Sbjct: 144 GTVGIHGDSPQ-FFLYSAFMTLVIILLHVFWGIVFFDGCEKKKWGILLIVLLTHLLVSAQ 202 Query: 527 TLIN 538 T I+ Sbjct: 203 TFIS 206
>APH1B_MOUSE (Q8C7N7) Gamma-secretase subunit APH-1B (APH-1b) (Aph-1beta)| Length = 257 Score = 60.5 bits (145), Expect = 5e-09 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 5/184 (2%) Frame = +2 Query: 2 PRAVLTLLSSTLFWLISLIVLSGIW---RGFLPLKSGLWWPYVIL--ILTSVAFQEGIRL 166 P V+ L++ FWL+SL++ S W R + G Y+++ +L SV QE RL Sbjct: 29 PLRVIFLIAGAFFWLVSLLLSSVFWFLVRVITDNRDGPVQNYLLIFGVLLSVCIQELFRL 88 Query: 167 VFWRLYKKMEEMLDAFADRISKPRLCLTDKMLISXXXXXXXXXXXXVFFCLSLLTPAFGR 346 +++L KK E L + + P + L++ VF ++ L+ + G Sbjct: 89 AYYKLLKKASEGLKSINPEETAPSM-----RLLAYVSGLGFGIMSGVFSFVNTLSNSLGP 143 Query: 347 ATFYVERCSRMPFFLVSAIISLGFLVIHTSSMIIAFNGYGERKKRDQIFVPVVHLIAAVM 526 T + S FFL SA ++L +++H ++ F+G + K + V + HL+ + Sbjct: 144 GTVGIHGDSPQ-FFLNSAFMTLVVIMLHVFWGVVFFDGCEKNKWYTLLTVLLTHLVVSTQ 202 Query: 527 TLIN 538 T ++ Sbjct: 203 TFLS 206
>APH1A_MOUSE (Q8BVF7) Gamma-secretase subunit APH-1A (APH-1a) (Aph-1alpha)| Length = 265 Score = 56.6 bits (135), Expect = 7e-08 Identities = 51/206 (24%), Positives = 94/206 (45%), Gaps = 5/206 (2%) Frame = +2 Query: 2 PRAVLTLLSSTLFWLISLIVLSGIWRGFLPL--KSGLWWPYVILIL---TSVAFQEGIRL 166 P V+ L++ FWL+SL++ S +W + + +S Y +LI SV QE R Sbjct: 29 PLRVIILVAGAFFWLVSLLLASVVWFILVHVTDRSDARLQYGLLIFGAAVSVLLQEVFRF 88 Query: 167 VFWRLYKKMEEMLDAFADRISKPRLCLTDKMLISXXXXXXXXXXXXVFFCLSLLTPAFGR 346 +++L KK +E L + ++ P + + +S VF +++L A G Sbjct: 89 AYYKLLKKADEGLASLSEDGRSP-ISIRQMAYVSGLSFGIISG---VFSVINILADALGP 144 Query: 347 ATFYVERCSRMPFFLVSAIISLGFLVIHTSSMIIAFNGYGERKKRDQIFVPVVHLIAAVM 526 + S +FL SA ++ +++HT ++ F+ R+ V HL+ + + Sbjct: 145 GVVGIHGDSPY-YFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLVVGSHLLTSGL 203 Query: 527 TLINLVPGGCLIGTPLLCVTAAMTLY 604 T +N L+ P+ VT +M L+ Sbjct: 204 TFLNPWYEASLL--PIYAVTVSMGLW 227
>APH1A_HUMAN (Q96BI3) Gamma-secretase subunit APH-1A (APH-1a) (Aph-1alpha)| (Presenilin-stabilization factor) Length = 265 Score = 56.6 bits (135), Expect = 7e-08 Identities = 51/206 (24%), Positives = 94/206 (45%), Gaps = 5/206 (2%) Frame = +2 Query: 2 PRAVLTLLSSTLFWLISLIVLSGIWRGFLPL--KSGLWWPYVILIL---TSVAFQEGIRL 166 P V+ L++ FWL+SL++ S +W + + +S Y +LI SV QE R Sbjct: 29 PLRVIILVAGAFFWLVSLLLASVVWFILVHVTDRSDARLQYGLLIFGAAVSVLLQEVFRF 88 Query: 167 VFWRLYKKMEEMLDAFADRISKPRLCLTDKMLISXXXXXXXXXXXXVFFCLSLLTPAFGR 346 +++L KK +E L + ++ P + + +S VF +++L A G Sbjct: 89 AYYKLLKKADEGLASLSEDGRSP-ISIRQMAYVSGLSFGIISG---VFSVINILADALGP 144 Query: 347 ATFYVERCSRMPFFLVSAIISLGFLVIHTSSMIIAFNGYGERKKRDQIFVPVVHLIAAVM 526 + S +FL SA ++ +++HT ++ F+ R+ V HL+ + + Sbjct: 145 GVVGIHGDSPY-YFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLVVGSHLLTSGL 203 Query: 527 TLINLVPGGCLIGTPLLCVTAAMTLY 604 T +N L+ P+ VT +M L+ Sbjct: 204 TFLNPWYEASLL--PIYAVTVSMGLW 227
>APH1C_MOUSE (Q9DCZ9) Putative gamma-secretase subunit APH-1C| Length = 258 Score = 53.9 bits (128), Expect = 4e-07 Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 6/185 (3%) Frame = +2 Query: 2 PRAVLTLLSSTLFWLISLIVLSGIW---RGFLPLKSGLWWPYVILI--LTSVAFQEGIRL 166 P V+ L++ FWL+SL++ S W R + Y+++ L SV QE RL Sbjct: 29 PLRVIFLIAGAFFWLVSLLLSSMFWFLVRVITNNRDESVQNYLLIFGALLSVCIQELFRL 88 Query: 167 VFWRLYKKMEEMLDAFADRISKPRLCLTDKM-LISXXXXXXXXXXXXVFFCLSLLTPAFG 343 +++L KK E L + P + M L++ VF ++ L+ + G Sbjct: 89 AYYKLLKKASEGLKSI-----NPEEDIAPSMRLLAYVSGLGFGIMSGVFSFVNTLSNSLG 143 Query: 344 RATFYVERCSRMPFFLVSAIISLGFLVIHTSSMIIAFNGYGERKKRDQIFVPVVHLIAAV 523 T + S FFL SA ++L +++H ++ F+G + K + V + HL+ + Sbjct: 144 PGTVGIHGDSPQ-FFLNSAFMTLVVIMLHVFWGVVFFDGCEKNKWYTLLTVLLTHLVVST 202 Query: 524 MTLIN 538 T ++ Sbjct: 203 QTFLS 207
>CXB4_HUMAN (Q9NTQ9) Gap junction beta-4 protein (Connexin-30.3) (Cx30.3)| Length = 266 Score = 33.9 bits (76), Expect = 0.46 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +2 Query: 95 KSGLWWPYVILILTSVAFQEGIRLVFWRLYK 187 + GLWW Y++ ++ A G +F RLYK Sbjct: 124 RGGLWWTYLLSLIFKAAVDAGFLYIFHRLYK 154
>CYB_LEPCU (Q8WGF6) Cytochrome b| Length = 379 Score = 32.3 bits (72), Expect = 1.3 Identities = 22/61 (36%), Positives = 31/61 (50%) Frame = +2 Query: 23 LSSTLFWLISLIVLSGIWRGFLPLKSGLWWPYVILILTSVAFQEGIRLVFWRLYKKMEEM 202 LS LFWL+ I+L+ W G P++ +PYVI+ T+ L+F L ME Sbjct: 320 LSQCLFWLLVAILLTLTWIGGQPVE----YPYVIIGQTASILYFLTILIFMPLVSIMENH 375 Query: 203 L 205 L Sbjct: 376 L 376
>YK33_YEAST (P23501) Hypothetical 46.5 kDa protein in MRS4-DYN1 intergenic| region Length = 404 Score = 31.2 bits (69), Expect = 3.0 Identities = 20/48 (41%), Positives = 27/48 (56%) Frame = +2 Query: 74 WRGFLPLKSGLWWPYVILILTSVAFQEGIRLVFWRLYKKMEEMLDAFA 217 WR + L L WP +L+L+ V F + LVF R+Y M MLD F+ Sbjct: 174 WR--ICLSDTLVWPTKLLLLSLVIFYY-LTLVFGRVYCGMHGMLDLFS 218
>CYB_CRAGR (Q34108) Cytochrome b| Length = 379 Score = 31.2 bits (69), Expect = 3.0 Identities = 17/50 (34%), Positives = 28/50 (56%) Frame = +2 Query: 23 LSSTLFWLISLIVLSGIWRGFLPLKSGLWWPYVILILTSVAFQEGIRLVF 172 LS TLFW++ V++ W G LP++S PY+++ + I L+F Sbjct: 320 LSQTLFWMLVSDVIALTWIGGLPVES----PYIMIGQVASVLYFSIILIF 365
>CYB_ARTHA (Q95734) Cytochrome b| Length = 379 Score = 31.2 bits (69), Expect = 3.0 Identities = 20/61 (32%), Positives = 30/61 (49%) Frame = +2 Query: 23 LSSTLFWLISLIVLSGIWRGFLPLKSGLWWPYVILILTSVAFQEGIRLVFWRLYKKMEEM 202 LS LFWL+ ++ + W G P++ PY+I+ T+ I L+F L ME Sbjct: 320 LSQCLFWLLVAVLFTLTWIGGQPVEH----PYIIIGQTASVLYFLIILIFMPLTSIMENY 375 Query: 203 L 205 L Sbjct: 376 L 376
>VATI_METTH (O27041) V-type ATP synthase subunit I (EC 3.6.3.14) (V-type ATPase| subunit I) Length = 658 Score = 30.8 bits (68), Expect = 3.9 Identities = 20/69 (28%), Positives = 37/69 (53%) Frame = +2 Query: 404 ISLGFLVIHTSSMIIAFNGYGERKKRDQIFVPVVHLIAAVMTLINLVPGGCLIGTPLLCV 583 +++G L I+ ++ A N R+ + +V LI + ++ LV GG + G PL+ + Sbjct: 480 LTVGVLHINFGLILGARNNIRLGNMREALGSQIVWLILELGIILYLV-GGMIFGAPLIIL 538 Query: 584 TAAMTLYHS 610 AM LY++ Sbjct: 539 AFAMLLYYN 547
>CYB_GLOLO (Q8WGG8) Cytochrome b| Length = 379 Score = 30.8 bits (68), Expect = 3.9 Identities = 22/61 (36%), Positives = 29/61 (47%) Frame = +2 Query: 23 LSSTLFWLISLIVLSGIWRGFLPLKSGLWWPYVILILTSVAFQEGIRLVFWRLYKKMEEM 202 LS LFW + I+L+ W G P++ PYVI+ T+ LVF L ME Sbjct: 320 LSQCLFWFLVAILLTLTWIGGQPVEX----PYVIIGQTASVLYFLTILVFMPLVSIMENH 375 Query: 203 L 205 L Sbjct: 376 L 376
>CYB_EROSE (Q4VUY8) Cytochrome b| Length = 379 Score = 30.8 bits (68), Expect = 3.9 Identities = 20/61 (32%), Positives = 30/61 (49%) Frame = +2 Query: 23 LSSTLFWLISLIVLSGIWRGFLPLKSGLWWPYVILILTSVAFQEGIRLVFWRLYKKMEEM 202 LS LFWL+ ++L+ W G P++ PYVI+ + I L+F L +E Sbjct: 320 LSQCLFWLLVAVLLTLTWIGGQPVEH----PYVIIGQVASVLYFLILLIFMPLISILENY 375 Query: 203 L 205 L Sbjct: 376 L 376
>CXB1_HORSE (Q6WGK6) Gap junction beta-1 protein (Connexin-32) (Cx32)| Length = 283 Score = 30.4 bits (67), Expect = 5.1 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +2 Query: 56 IVLSGIWRGFLPLKSGLWWPYVILILTSVAFQEGIRLVFWRLY 184 I L + R + + LWW YVI ++ + F+ VF+ LY Sbjct: 115 IHLEEVKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLY 157
>APH1_CAEEL (O45876) Gamma-secretase subunit aph-1 (Anterior-pharynx-defective| protein 1) (Presenilin enhancer protein 1) Length = 308 Score = 30.4 bits (67), Expect = 5.1 Identities = 18/69 (26%), Positives = 34/69 (49%) Frame = +2 Query: 2 PRAVLTLLSSTLFWLISLIVLSGIWRGFLPLKSGLWWPYVILILTSVAFQEGIRLVFWRL 181 P ++ + FWL+SL+ S W G L + L +++ + + QE R+ ++ L Sbjct: 29 PVRIILFFLGSFFWLVSLLFSSLAWLG---LSTVLPDTFLLSLTVCIIAQELSRVAYFML 85 Query: 182 YKKMEEMLD 208 KK + L+ Sbjct: 86 LKKAQRGLN 94
>CXB4_MOUSE (Q02738) Gap junction beta-4 protein (Connexin-30.3) (Cx30.3)| Length = 266 Score = 30.4 bits (67), Expect = 5.1 Identities = 10/31 (32%), Positives = 17/31 (54%) Frame = +2 Query: 95 KSGLWWPYVILILTSVAFQEGIRLVFWRLYK 187 + GLWW Y++ ++ A G +F +YK Sbjct: 124 RGGLWWTYLLSLIFKAAVDSGFLYIFHCIYK 154
>G137B_HUMAN (O60478) Protein GPR137B (Transmembrane 7 superfamily member 1)| Length = 399 Score = 30.4 bits (67), Expect = 5.1 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 7/63 (11%) Frame = +2 Query: 308 FFCLSLLTPAFGRATFYVERCS-------RMPFFLVSAIISLGFLVIHTSSMIIAFNGYG 466 FF L+L+ F + F + R+P +L S ISL FL+++ + ++ G Sbjct: 126 FFTLTLMNLYFTQVIFKAKSKYSPELLKYRLPLYLASLFISLVFLLVNLTCAVLVKTGNW 185 Query: 467 ERK 475 ERK Sbjct: 186 ERK 188
>CXB4_RAT (P36380) Gap junction beta-4 protein (Connexin-30.3) (Cx30.3)| Length = 265 Score = 30.4 bits (67), Expect = 5.1 Identities = 10/31 (32%), Positives = 17/31 (54%) Frame = +2 Query: 95 KSGLWWPYVILILTSVAFQEGIRLVFWRLYK 187 + GLWW Y++ ++ A G +F +YK Sbjct: 124 RGGLWWTYLLSLIFKAAVDSGFLYIFHCIYK 154
>CXB1_BOVIN (O18968) Gap junction beta-1 protein (Connexin-32) (Cx32)| Length = 284 Score = 30.0 bits (66), Expect = 6.7 Identities = 13/41 (31%), Positives = 21/41 (51%) Frame = +2 Query: 62 LSGIWRGFLPLKSGLWWPYVILILTSVAFQEGIRLVFWRLY 184 L + R + + LWW YVI ++ + F+ VF+ LY Sbjct: 117 LEEVKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLY 157
>ISP3_SCHPO (P40899) Sexual differentiation process protein isp3 (Meiotic| expression up-regulated protein 4) Length = 182 Score = 30.0 bits (66), Expect = 6.7 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Frame = +1 Query: 472 KEERPNFCPSGSPDCCCNDVNQPCARR--LPHRYTFT------VCDSCDD 597 ++++P C P CC ++ N C RR L R F CD C++ Sbjct: 81 EKKKPKCCEKKKPKCCESEQNNGCGRRNQLARRLAFLGSFGDGDCDGCNE 130
>CYB_EPTSE (O21159) Cytochrome b| Length = 379 Score = 30.0 bits (66), Expect = 6.7 Identities = 20/61 (32%), Positives = 30/61 (49%) Frame = +2 Query: 23 LSSTLFWLISLIVLSGIWRGFLPLKSGLWWPYVILILTSVAFQEGIRLVFWRLYKKMEEM 202 +S LFWL+ +L+ W G P++ +PYVI+ + I +VF L ME Sbjct: 320 ISQCLFWLLVADLLTLTWIGGQPVE----YPYVIIGQLASVLYFSIIIVFMPLVGLMENY 375 Query: 203 L 205 L Sbjct: 376 L 376
>LMIP_RAT (P54825) Lens fiber membrane intrinsic protein (MP17) (MP18) (MP19)| (MP20) Length = 173 Score = 29.6 bits (65), Expect = 8.7 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 4/81 (4%) Frame = +2 Query: 8 AVLTLLSSTLFWLISLIVLSGIWRGFLPLKSGLW---WPYVI-LILTSVAFQEGIRLVFW 175 A + +STLF L++L + +G+ FL + G W W Y++ + + F GI F+ Sbjct: 101 AGIMFFASTLFVLLALAIYTGVTVSFLGRRFGDWRFSWSYILGWVALLMTFFAGI---FY 157 Query: 176 RLYKKMEEMLDAFADRISKPR 238 +M E R+S PR Sbjct: 158 MCAYRMHE-----CRRLSTPR 173
>CYB_RHIAL (Q9G1F7) Cytochrome b| Length = 379 Score = 29.6 bits (65), Expect = 8.7 Identities = 19/61 (31%), Positives = 31/61 (50%) Frame = +2 Query: 23 LSSTLFWLISLIVLSGIWRGFLPLKSGLWWPYVILILTSVAFQEGIRLVFWRLYKKMEEM 202 LS LFWL+ ++ + W G P++ +P++I+ T+ I LVF L +E Sbjct: 320 LSQCLFWLLVAVLFTLTWIGGQPVE----YPFIIIGQTASVLYFLIILVFMPLTSLIENH 375 Query: 203 L 205 L Sbjct: 376 L 376
>CYB_GLOMN (Q8W8Y1) Cytochrome b| Length = 379 Score = 29.6 bits (65), Expect = 8.7 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Frame = +2 Query: 23 LSSTLFWLISLIVLSGIWRGFLPLKSGLWWPYVIL-ILTSVAFQEGIRLVFWRLYKKMEE 199 LS LFW + I+L+ W G P++ +PYVI+ + SV + I LVF L ME Sbjct: 320 LSQCLFWFLVAILLTLTWIGGQPVE----YPYVIIGQMASVLYFLTI-LVFMPLISIMEN 374 Query: 200 ML 205 L Sbjct: 375 HL 376
>CYB_GLOLE (Q8WGG5) Cytochrome b| Length = 379 Score = 29.6 bits (65), Expect = 8.7 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Frame = +2 Query: 23 LSSTLFWLISLIVLSGIWRGFLPLKSGLWWPYVIL-ILTSVAFQEGIRLVFWRLYKKMEE 199 LS LFW + I+L+ W G P++ +PYVI+ + SV + I LVF L ME Sbjct: 320 LSQCLFWFLVAILLTLTWIGGQPVE----YPYVIIGQMASVLYFLTI-LVFMPLVSIMEN 374 Query: 200 ML 205 L Sbjct: 375 HL 376
>CYB_EPTNI (Q957C6) Cytochrome b| Length = 379 Score = 29.6 bits (65), Expect = 8.7 Identities = 20/61 (32%), Positives = 30/61 (49%) Frame = +2 Query: 23 LSSTLFWLISLIVLSGIWRGFLPLKSGLWWPYVILILTSVAFQEGIRLVFWRLYKKMEEM 202 +S LFWL+ +L+ W G P++ +PYVI+ + I +VF L ME Sbjct: 320 ISQCLFWLLVADLLTLTWIGGQPVE----YPYVIIGQLASVLYFSIIIVFMPLVGLMENH 375 Query: 203 L 205 L Sbjct: 376 L 376
>CYB_CRAGG (Q34106) Cytochrome b| Length = 379 Score = 29.6 bits (65), Expect = 8.7 Identities = 16/50 (32%), Positives = 27/50 (54%) Frame = +2 Query: 23 LSSTLFWLISLIVLSGIWRGFLPLKSGLWWPYVILILTSVAFQEGIRLVF 172 LS TLFW++ V++ W G P++S PY+++ + I L+F Sbjct: 320 LSQTLFWMLISDVIALTWIGGQPVES----PYIVIGQVASVLYFSIILIF 365 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,466,831 Number of Sequences: 219361 Number of extensions: 2148586 Number of successful extensions: 6577 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 6376 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6576 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6598423128 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
