ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags17m18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_464744.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1148 Score = 361 bits (182), Expect = 1e-96 Identities = 293/331 (88%) Strand = Plus / Plus Query: 67 ggcagtacctgctccagctgcagcgccacccactccgcaccaagatgatcactgctgggt 126 |||||||||||| |||||| |||| |||||| ||||| |||||||||||||| || |||| Sbjct: 348 ggcagtacctgcgccagctccagctccaccctctccggaccaagatgatcacggcggggt 407 Query: 127 tcctcgcaggcatcagtgactccgnggcgcagaagctctctggatatcagaagattgaga 186 |||||| ||| |||| ||||||| ||||||||||||||| || || |||| ||| |||| Sbjct: 408 gcctcgccggcgtcagcgactccgtggcgcagaagctctccggctaccagaggatcgaga 467 Query: 187 agcgccgnctcctgctcaagatgatatttgggtttgcatatggtggcccatttgggcatt 246 ||||||| ||||||||||||||| | ||||||||||| ||||||||||| ||||| |||| Sbjct: 468 agcgccgcctcctgctcaagatgctctttgggtttgcttatggtggcccttttggccatt 527 Query: 247 tcctgcataaaatgttggattatatctttaaagggaagaaggataccaaaactgtagcta 306 |||| |||||| |||| ||||||||||| |||||||||||||||||||||||| |||| | Sbjct: 528 tcctccataaagtgttagattatatcttcaaagggaagaaggataccaaaactatagcca 587 Query: 307 anaaggtgttgctggagcagatcacttcctcaccctggaacaatttactcttcttattct 366 | |||||||| ||||||||||||||||| || |||||||| ||| | |||||||| |||| Sbjct: 588 agaaggtgttactggagcagatcacttcttctccctggaataatctgctcttcttgttct 647 Query: 367 attatggatatgttgttgagaagaggccttt 397 ||||||||||||||||||||| ||||||||| Sbjct: 648 attatggatatgttgttgagaggaggccttt 678
>dbj|AK121976.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108J17, full insert sequence Length = 1146 Score = 361 bits (182), Expect = 1e-96 Identities = 293/331 (88%) Strand = Plus / Plus Query: 67 ggcagtacctgctccagctgcagcgccacccactccgcaccaagatgatcactgctgggt 126 |||||||||||| |||||| |||| |||||| ||||| |||||||||||||| || |||| Sbjct: 346 ggcagtacctgcgccagctccagctccaccctctccggaccaagatgatcacggcggggt 405 Query: 127 tcctcgcaggcatcagtgactccgnggcgcagaagctctctggatatcagaagattgaga 186 |||||| ||| |||| ||||||| ||||||||||||||| || || |||| ||| |||| Sbjct: 406 gcctcgccggcgtcagcgactccgtggcgcagaagctctccggctaccagaggatcgaga 465 Query: 187 agcgccgnctcctgctcaagatgatatttgggtttgcatatggtggcccatttgggcatt 246 ||||||| ||||||||||||||| | ||||||||||| ||||||||||| ||||| |||| Sbjct: 466 agcgccgcctcctgctcaagatgctctttgggtttgcttatggtggcccttttggccatt 525 Query: 247 tcctgcataaaatgttggattatatctttaaagggaagaaggataccaaaactgtagcta 306 |||| |||||| |||| ||||||||||| |||||||||||||||||||||||| |||| | Sbjct: 526 tcctccataaagtgttagattatatcttcaaagggaagaaggataccaaaactatagcca 585 Query: 307 anaaggtgttgctggagcagatcacttcctcaccctggaacaatttactcttcttattct 366 | |||||||| ||||||||||||||||| || |||||||| ||| | |||||||| |||| Sbjct: 586 agaaggtgttactggagcagatcacttcttctccctggaataatctgctcttcttgttct 645 Query: 367 attatggatatgttgttgagaagaggccttt 397 ||||||||||||||||||||| ||||||||| Sbjct: 646 attatggatatgttgttgagaggaggccttt 676
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 123 bits (62), Expect = 5e-25 Identities = 91/101 (90%) Strand = Plus / Minus Query: 213 tttgggtttgcatatggtggcccatttgggcatttcctgcataaaatgttggattatatc 272 ||||||||||| ||||||||||| ||||| |||||||| |||||| |||| ||||||||| Sbjct: 7067075 tttgggtttgcttatggtggcccttttggccatttcctccataaagtgttagattatatc 7067016 Query: 273 tttaaagggaagaaggataccaaaactgtagctaanaaggt 313 || |||||||||||||||||||||||| |||| || ||||| Sbjct: 7067015 ttcaaagggaagaaggataccaaaactatagccaagaaggt 7066975 Score = 101 bits (51), Expect = 2e-18 Identities = 88/101 (87%) Strand = Plus / Minus Query: 109 agatgatcactgctgggttcctcgcaggcatcagtgactccgnggcgcagaagctctctg 168 |||||||||| || |||| |||||| ||| |||| ||||||| ||||||||||||||| | Sbjct: 7068125 agatgatcacggcggggtgcctcgccggcgtcagcgactccgtggcgcagaagctctccg 7068066 Query: 169 gatatcagaagattgagaagcgccgnctcctgctcaagatg 209 | || |||| ||| ||||||||||| ||||||||||||||| Sbjct: 7068065 gctaccagaggatcgagaagcgccgcctcctgctcaagatg 7068025 Score = 99.6 bits (50), Expect = 7e-18 Identities = 71/78 (91%) Strand = Plus / Minus Query: 310 aggtgttgctggagcagatcacttcctcaccctggaacaatttactcttcttattctatt 369 ||||||| ||||||||||||||||| || |||||||| ||| | |||||||| ||||||| Sbjct: 7066640 aggtgttactggagcagatcacttcttctccctggaataatctgctcttcttgttctatt 7066581 Query: 370 atggatatgttgttgaga 387 |||||||||||||||||| Sbjct: 7066580 atggatatgttgttgaga 7066563 Score = 48.1 bits (24), Expect = 0.022 Identities = 39/44 (88%) Strand = Plus / Minus Query: 67 ggcagtacctgctccagctgcagcgccacccactccgcaccaag 110 |||||||||||| |||||| |||| |||||| ||||| |||||| Sbjct: 7068251 ggcagtacctgcgccagctccagctccaccctctccggaccaag 7068208
>dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0495C02 Length = 151467 Score = 123 bits (62), Expect = 5e-25 Identities = 91/101 (90%) Strand = Plus / Minus Query: 213 tttgggtttgcatatggtggcccatttgggcatttcctgcataaaatgttggattatatc 272 ||||||||||| ||||||||||| ||||| |||||||| |||||| |||| ||||||||| Sbjct: 70494 tttgggtttgcttatggtggcccttttggccatttcctccataaagtgttagattatatc 70435 Query: 273 tttaaagggaagaaggataccaaaactgtagctaanaaggt 313 || |||||||||||||||||||||||| |||| || ||||| Sbjct: 70434 ttcaaagggaagaaggataccaaaactatagccaagaaggt 70394 Score = 101 bits (51), Expect = 2e-18 Identities = 88/101 (87%) Strand = Plus / Minus Query: 109 agatgatcactgctgggttcctcgcaggcatcagtgactccgnggcgcagaagctctctg 168 |||||||||| || |||| |||||| ||| |||| ||||||| ||||||||||||||| | Sbjct: 71544 agatgatcacggcggggtgcctcgccggcgtcagcgactccgtggcgcagaagctctccg 71485 Query: 169 gatatcagaagattgagaagcgccgnctcctgctcaagatg 209 | || |||| ||| ||||||||||| ||||||||||||||| Sbjct: 71484 gctaccagaggatcgagaagcgccgcctcctgctcaagatg 71444 Score = 99.6 bits (50), Expect = 7e-18 Identities = 71/78 (91%) Strand = Plus / Minus Query: 310 aggtgttgctggagcagatcacttcctcaccctggaacaatttactcttcttattctatt 369 ||||||| ||||||||||||||||| || |||||||| ||| | |||||||| ||||||| Sbjct: 70059 aggtgttactggagcagatcacttcttctccctggaataatctgctcttcttgttctatt 70000 Query: 370 atggatatgttgttgaga 387 |||||||||||||||||| Sbjct: 69999 atggatatgttgttgaga 69982 Score = 48.1 bits (24), Expect = 0.022 Identities = 39/44 (88%) Strand = Plus / Minus Query: 67 ggcagtacctgctccagctgcagcgccacccactccgcaccaag 110 |||||||||||| |||||| |||| |||||| ||||| |||||| Sbjct: 71670 ggcagtacctgcgccagctccagctccaccctctccggaccaag 71627
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 72 tacctgctccagctgcagcgcc 93 |||||||||||||||||||||| Sbjct: 754750 tacctgctccagctgcagcgcc 754771
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome Length = 4607203 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 68 gcagtacctgctccagctgcagcgc 92 |||||||||||||||| |||||||| Sbjct: 59623 gcagtacctgctccagttgcagcgc 59647
>gb|AC110530.10| Mus musculus chromosome 9, clone RP23-414K12, complete sequence Length = 207312 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 ggaggagttgggggaggaaca 31 ||||||||||||||||||||| Sbjct: 125755 ggaggagttgggggaggaaca 125775
>gb|AE014075.1| Escherichia coli CFT073, complete genome Length = 5231428 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 68 gcagtacctgctccagctgcagcgc 92 |||||||||||||||| |||||||| Sbjct: 63497 gcagtacctgctccagttgcagcgc 63521
>gb|CP000243.1| Escherichia coli UTI89, complete genome Length = 5065741 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 68 gcagtacctgctccagctgcagcgc 92 |||||||||||||||| |||||||| Sbjct: 63535 gcagtacctgctccagttgcagcgc 63559
>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome Length = 4639675 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 68 gcagtacctgctccagctgcagcgc 92 |||||||||||||||| |||||||| Sbjct: 61695 gcagtacctgctccagttgcagcgc 61719
>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome Length = 4646332 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 68 gcagtacctgctccagctgcagcgc 92 |||||||||||||||| |||||||| Sbjct: 61695 gcagtacctgctccagttgcagcgc 61719
>gb|AF335538.1| Bacteriophage HK620, complete genome Length = 38297 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 76 tgctccagctgcagcgccacccact 100 ||||||| ||||||||||||||||| Sbjct: 33051 tgctccacctgcagcgccacccact 33027
>gb|AF223956.1|AF223956 Hepatitis B virus strain C-1858 isolate ea3, complete genome Length = 3197 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 4 aggaatcggaggagttgggggagga 28 |||||| |||||||||||||||||| Sbjct: 1726 aggaatgggaggagttgggggagga 1750
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome Length = 4599354 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 68 gcagtacctgctccagctgcagcgc 92 |||||||||||||||| |||||||| Sbjct: 59108 gcagtacctgctccagttgcagcgc 59132
>emb|AJ344116.1|HEB344116 Hepatitis B virus complete genome, genotype D, isolate GX27 Length = 3182 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 4 aggaatcggaggagttgggggagga 28 |||||| |||||||||||||||||| Sbjct: 1726 aggaatgggaggagttgggggagga 1750
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 68 gcagtacctgctccagctgcagcgc 92 |||||||||||||||| |||||||| Sbjct: 49366 gcagtacctgctccagttgcagcgc 49390
>gb|CP000038.1| Shigella sonnei Ss046, complete genome Length = 4825265 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 68 gcagtacctgctccagctgcagcgc 92 |||||||||||||||| |||||||| Sbjct: 69640 gcagtacctgctccagttgcagcgc 69664
>ref|NM_120251.3| Arabidopsis thaliana wave3 AT5G01730 (wave3) mRNA, complete cds Length = 3700 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 agaagctctctggatatcag 176 |||||||||||||||||||| Sbjct: 1290 agaagctctctggatatcag 1271
>ref|NM_116685.3| Arabidopsis thaliana PMP22 AT4G04470 (PMP22) mRNA, complete cds Length = 907 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 tttaaagggaagaaggatac 292 |||||||||||||||||||| Sbjct: 273 tttaaagggaagaaggatac 292
>gb|AY743927.1| Arabidopsis thaliana SCAR4 (SCAR4) mRNA, complete cds Length = 3513 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 agaagctctctggatatcag 176 |||||||||||||||||||| Sbjct: 1290 agaagctctctggatatcag 1271
>gb|AC102654.7| Mus musculus chromosome 1, clone RP23-2K13, complete sequence Length = 245404 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 348 aatttactcttcttattctattat 371 ||||||||||| |||||||||||| Sbjct: 208002 aatttactctttttattctattat 207979
>ref|XM_580955.2| PREDICTED: Bos taurus similar to Protein AATF (Apoptosis-antagonizing transcription factor) (Rb-binding protein Che-1) (LOC504783), partial mRNA Length = 1381 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 ctgctccagctgcagcgcca 94 |||||||||||||||||||| Sbjct: 570 ctgctccagctgcagcgcca 551
>gb|AC164600.5| Mus musculus chromosome 1, clone RP23-366M5, complete sequence Length = 191581 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 348 aatttactcttcttattctattat 371 ||||||||||| |||||||||||| Sbjct: 182096 aatttactctttttattctattat 182119
>ref|XM_862407.1| PREDICTED: Canis familiaris similar to Protein AATF (Apoptosis-antagonizing transcription factor) (Rb-binding protein Che-1), transcript variant 2 (LOC480595), mRNA Length = 2081 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 ctgctccagctgcagcgcca 94 |||||||||||||||||||| Sbjct: 183 ctgctccagctgcagcgcca 164
>ref|XM_537715.2| PREDICTED: Canis familiaris similar to Protein AATF (Apoptosis-antagonizing transcription factor) (Rb-binding protein Che-1), transcript variant 1 (LOC480595), mRNA Length = 2137 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 ctgctccagctgcagcgcca 94 |||||||||||||||||||| Sbjct: 183 ctgctccagctgcagcgcca 164
>gb|DQ102518.1| Hepatitis B virus isolate 1314-03 core promoter region Length = 164 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 ggaggagttgggggaggaac 30 |||||||||||||||||||| Sbjct: 84 ggaggagttgggggaggaac 103
>gb|AC022773.17| Mus musculus chromosome X, clone RP23-157B8, complete sequence Length = 212031 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ttaaagggaagaaggataccaaaa 297 |||| ||||||||||||||||||| Sbjct: 119729 ttaaggggaagaaggataccaaaa 119706
>emb|AL162493.21| Human DNA sequence from clone RP11-120L14 on chromosome 13, complete sequence Length = 158083 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 gcataaaatgttggattata 270 |||||||||||||||||||| Sbjct: 8454 gcataaaatgttggattata 8435
>emb|AL161500.2|ATCHRIV12 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 12 Length = 199759 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 tttaaagggaagaaggatac 292 |||||||||||||||||||| Sbjct: 150435 tttaaagggaagaaggatac 150416
>emb|AL162351.1|ATT20L15 Arabidopsis thaliana DNA chromosome 5, BAC clone T20L15 (ESSA project) Length = 96565 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 agaagctctctggatatcag 176 |||||||||||||||||||| Sbjct: 149 agaagctctctggatatcag 168
>emb|AL161946.1|ATF7A7 Arabidopsis thaliana DNA chromosome 5, BAC clone F7A7 (ESSA project) Length = 86690 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 agaagctctctggatatcag 176 |||||||||||||||||||| Sbjct: 83182 agaagctctctggatatcag 83201
>emb|BX323858.12| Zebrafish DNA sequence from clone DKEY-102F10 in linkage group 14, complete sequence Length = 184463 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 ggcatttcctgcataaaatg 260 |||||||||||||||||||| Sbjct: 15918 ggcatttcctgcataaaatg 15937
>gb|DQ381704.1| Hepatitis B virus isolate chronic 40 precore/core protein gene, partial cds Length = 359 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 ggaggagttgggggaggaac 30 |||||||||||||||||||| Sbjct: 48 ggaggagttgggggaggaac 67
>emb|BX829369.1|CNS0A4HG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL9ZA06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 808 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 tttaaagggaagaaggatac 292 |||||||||||||||||||| Sbjct: 253 tttaaagggaagaaggatac 272
>emb|BX828649.1|CNS0A4I6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL25ZF10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 781 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 tttaaagggaagaaggatac 292 |||||||||||||||||||| Sbjct: 259 tttaaagggaagaaggatac 278
>emb|BX828804.1|CNS0A4C9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL40ZA04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 772 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 tttaaagggaagaaggatac 292 |||||||||||||||||||| Sbjct: 234 tttaaagggaagaaggatac 253
>gb|BT003055.1| Arabidopsis thaliana At4g04470 gene, complete cds Length = 573 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 tttaaagggaagaaggatac 292 |||||||||||||||||||| Sbjct: 241 tttaaagggaagaaggatac 260
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 agtacctgctccagctgcag 89 |||||||||||||||||||| Sbjct: 929631 agtacctgctccagctgcag 929650
>emb|AJ006053.1|ATH6053 Arabidopsis thaliana mRNA for peroxisomal membrane protein Length = 580 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 tttaaagggaagaaggatac 292 |||||||||||||||||||| Sbjct: 244 tttaaagggaagaaggatac 263
>gb|AF076243.1|AF076243 Arabidopsis thaliana BAC T26N6 from chromosome IV at 19.3 cM, complete sequence Length = 99384 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 tttaaagggaagaaggatac 292 |||||||||||||||||||| Sbjct: 50089 tttaaagggaagaaggatac 50070
>emb|CR847940.9| Zebrafish DNA sequence from clone CH211-250O24 in linkage group 11, complete sequence Length = 102840 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 ggcatttcctgcataaaatg 260 |||||||||||||||||||| Sbjct: 56814 ggcatttcctgcataaaatg 56833
>emb|CR376825.16| Zebrafish DNA sequence from clone CH211-136O20 in linkage group 14, complete sequence Length = 176973 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 ggcatttcctgcataaaatg 260 |||||||||||||||||||| Sbjct: 152595 ggcatttcctgcataaaatg 152614
>emb|AL731832.13| Mouse DNA sequence from clone RP23-180N10 on chromosome X, complete sequence Length = 144400 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 ttaaagggaagaaggataccaaaa 297 |||| ||||||||||||||||||| Sbjct: 138967 ttaaggggaagaaggataccaaaa 138944
>gb|AY781180.1| Hepatitis B virus strain GIII_15, complete genome Length = 3182 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 ggaggagttgggggaggaac 30 |||||||||||||||||||| Sbjct: 1733 ggaggagttgggggaggaac 1752
>gb|AY781179.1| Hepatitis B virus strain GIII_14, complete genome Length = 3182 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 ggaggagttgggggaggaac 30 |||||||||||||||||||| Sbjct: 1733 ggaggagttgggggaggaac 1752
>emb|AL833774.4| Mouse DNA sequence from clone RP23-383I16 on chromosome 2, complete sequence Length = 194045 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 agctctctggatatcagaag 179 |||||||||||||||||||| Sbjct: 16512 agctctctggatatcagaag 16493
>gb|L08805.1|HPBETNC Hepatitis B virus envelope, surface and nucleocapsid protein genes and transactivator gene, complete cds Length = 3212 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 ggaggagttgggggaggaac 30 |||||||||||||||||||| Sbjct: 1732 ggaggagttgggggaggaac 1751
>dbj|AB014387.1| Hepatitis B virus genomic DNA, complete sequence, isolate 28Y10HCC Length = 3170 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 ggaggagttgggggaggaac 30 |||||||||||||||||||| Sbjct: 1688 ggaggagttgggggaggaac 1707 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,038,570 Number of Sequences: 3902068 Number of extensions: 4038570 Number of successful extensions: 90496 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90239 Number of HSP's gapped (non-prelim): 257 length of query: 397 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 375 effective length of database: 17,147,199,772 effective search space: 6430199914500 effective search space used: 6430199914500 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
