ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags18b12 |
|---|---|
| Clone Library Name | barley_pub |
>UBAX1_ARATH (Q7Y175) UBA and UBX domain-containing protein At4g15410| Length = 421 Score = 117 bits (292), Expect = 2e-26 Identities = 58/130 (44%), Positives = 76/130 (58%), Gaps = 3/130 (2%) Frame = +2 Query: 53 EPQEYYTGGEKSGMLVQDPTRRNNVDSIFEQARVMGAQQVPLPXXXXXXXXXXXXXXXXR 232 E EYYTGG+KSGM+VQDP + +VD +F+QAR + P R Sbjct: 155 EANEYYTGGQKSGMMVQDPKKVKDVDELFDQARQSAVDRPVEPSRSASTSFTGAA----R 210 Query: 233 VLSGDXXXXXXXXXXXXD---VLHNIHFWNNGFTVDDGPLRGYDDPENADFIESIKKSQC 403 +LSG+ ++H I FW NGFTV+DGPLRG+ DPENA F+ SI +S+C Sbjct: 211 LLSGEAVSSSPQQQQQEQPQRIMHTITFWLNGFTVNDGPLRGFSDPENAAFMNSISRSEC 270 Query: 404 PQELEPADRR 433 P ELEPAD++ Sbjct: 271 PSELEPADKK 280
>NSF1C_HUMAN (Q9UNZ2) NSFL1 cofactor p47 (p97 cofactor p47)| Length = 370 Score = 60.5 bits (145), Expect = 2e-09 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 17/138 (12%) Frame = +2 Query: 53 EPQEYYTGG-EKSGMLVQDPTRRNN----VDSIFEQARVMGAQQV------------PLP 181 E Q +Y GG E+SG + P R+ + VD +F+ A+ GA V P P Sbjct: 90 EGQRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRP 149 Query: 182 XXXXXXXXXXXXXXXXRVLSGDXXXXXXXXXXXXDVLHNIHFWNNGFTVDDGPLRGYDDP 361 ++G+ DV + W +GF++D+G LR Y DP Sbjct: 150 FAGGGYRLGAAPEEESAYVAGEKRQHSSQ-----DVHVVLKLWKSGFSLDNGELRSYQDP 204 Query: 362 ENADFIESIKKSQCPQEL 415 NA F+ESI++ + P EL Sbjct: 205 SNAQFLESIRRGEVPAEL 222
>NSF1C_RAT (O35987) NSFL1 cofactor p47 (p97 cofactor p47) (XY body-associated| protein XY40) Length = 370 Score = 59.7 bits (143), Expect = 3e-09 Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 17/138 (12%) Frame = +2 Query: 53 EPQEYYTGG-EKSGMLVQDPTRRNN----VDSIFEQARVMGAQQV------------PLP 181 E Q +Y GG E+SG + P R+ + VD +F+ A+ GA V P P Sbjct: 90 EGQRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRP 149 Query: 182 XXXXXXXXXXXXXXXXRVLSGDXXXXXXXXXXXXDVLHNIHFWNNGFTVDDGPLRGYDDP 361 ++G+ DV + W GF++D+G LR Y DP Sbjct: 150 FAGGGYRLGAAPEEESAYVAGERRRHSGQ-----DVHVVLKLWKTGFSLDNGDLRSYQDP 204 Query: 362 ENADFIESIKKSQCPQEL 415 NA F+ESI++ + P EL Sbjct: 205 SNAQFLESIRRGEVPAEL 222
>NSF1C_MOUSE (Q9CZ44) NSFL1 cofactor p47 (p97 cofactor p47)| Length = 370 Score = 59.7 bits (143), Expect = 3e-09 Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 17/138 (12%) Frame = +2 Query: 53 EPQEYYTGG-EKSGMLVQDPTRRNN----VDSIFEQARVMGAQQV------------PLP 181 E Q +Y GG E+SG + P R+ + VD +F+ A+ GA V P P Sbjct: 90 EGQRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRP 149 Query: 182 XXXXXXXXXXXXXXXXRVLSGDXXXXXXXXXXXXDVLHNIHFWNNGFTVDDGPLRGYDDP 361 ++G+ DV + W GF++D+G LR Y DP Sbjct: 150 FAGGGYRLGAAPEEESAYVAGERRRHSGQ-----DVHVVLKLWKTGFSLDNGDLRSYQDP 204 Query: 362 ENADFIESIKKSQCPQEL 415 NA F+ESI++ + P EL Sbjct: 205 SNAQFLESIRRGEVPAEL 222
>UBX3_SCHPO (Q9UT81) UBX domain-containing protein 3| Length = 410 Score = 50.8 bits (120), Expect = 1e-06 Identities = 34/139 (24%), Positives = 52/139 (37%), Gaps = 18/139 (12%) Frame = +2 Query: 53 EPQEYYTGGEKSGMLVQD---PTRRNNVDSIFEQARVMGAQQVPLPXXXXXXXXXXXXXX 223 E +TGGEKSG+ V+D ++ V I E+AR + Sbjct: 116 EKSHLFTGGEKSGLSVEDGDPDPKKQLVRDILEKARQHTISPLDEQDSGPSSLASSWASV 175 Query: 224 XXRVLSGDXXXXXXXXXXXXD---------------VLHNIHFWNNGFTVDDGPLRGYDD 358 R+ + + + ++FW NGF+VDDGP+ YDD Sbjct: 176 GQRLGTENEASGSTTPVTQSGPPRENPPTESQPEKPLRRTLYFWRNGFSVDDGPIYTYDD 235 Query: 359 PENADFIESIKKSQCPQEL 415 P N + + I + P L Sbjct: 236 PANQEMLRYINSGRAPLHL 254
>UBX1_YEAST (P34223) UBX domain-containing protein 1 (Suppressor of high-copy| PP1 protein) Length = 423 Score = 48.9 bits (115), Expect = 5e-06 Identities = 36/132 (27%), Positives = 54/132 (40%), Gaps = 11/132 (8%) Frame = +2 Query: 53 EPQEYYTGGEKSGMLVQDPTRRNNV-DSIFEQAR---VMGAQQVPLPXXXXXXXXXXXXX 220 +P+ + GGE SG+ V DP+ N++ + E+AR MGA+ Sbjct: 144 QPRNTFAGGETSGLEVTDPSDPNSLLKDLLEKARRGGQMGAENGFRDDEDHEMGANRFTG 203 Query: 221 XXXRVLSGDXXXXXXXXXXXXD-------VLHNIHFWNNGFTVDDGPLRGYDDPENADFI 379 R+ S V I FW GF V DGPL YDDP N+ ++ Sbjct: 204 RGFRLGSTIDAADEVVEDNTSQSQRRPEKVTREITFWKEGFQVADGPLYRYDDPANSFYL 263 Query: 380 ESIKKSQCPQEL 415 + + + P +L Sbjct: 264 SELNQGRAPLKL 275
>UBXD4_HUMAN (P68543) UBX domain-containing protein 4| Length = 259 Score = 43.5 bits (101), Expect = 2e-04 Identities = 20/41 (48%), Positives = 25/41 (60%) Frame = +2 Query: 296 NIHFWNNGFTVDDGPLRGYDDPENADFIESIKKSQCPQELE 418 NI W NGFTV+D R Y D + F+ SIKK + P EL+ Sbjct: 64 NIKLWKNGFTVNDD-FRSYSDGASQQFLNSIKKGELPSELQ 103
>UBXD4_MOUSE (Q99KJ0) UBX domain-containing protein 4| Length = 258 Score = 42.7 bits (99), Expect = 4e-04 Identities = 20/40 (50%), Positives = 24/40 (60%) Frame = +2 Query: 296 NIHFWNNGFTVDDGPLRGYDDPENADFIESIKKSQCPQEL 415 NI W NGFTV+D R Y D + F+ SIKK + P EL Sbjct: 65 NIKLWKNGFTVNDD-FRSYSDGASQQFLNSIKKGELPSEL 103
>ADB4C_MELGA (P43141) Beta-4C adrenergic receptor (Beta-4C adrenoceptor)| (Beta-4C adrenoreceptor) Length = 428 Score = 28.1 bits (61), Expect = 9.7 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +2 Query: 302 HFWNNGFTVDDGPLRGYDDPENADFIESI 388 H+W +G D+ +R YDDP DF+ ++ Sbjct: 162 HWWRDG--ADEQAVRCYDDPRCCDFVTNM 188 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,849,237 Number of Sequences: 219361 Number of extensions: 790456 Number of successful extensions: 1873 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1836 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1870 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
