ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags17m06 |
|---|---|
| Clone Library Name | barley_pub |
>NDC1_RAT (Q6AXN4) Nucleoporin NDC1 (Transmembrane protein 48)| Length = 673 Score = 40.8 bits (94), Expect = 0.003 Identities = 27/69 (39%), Positives = 38/69 (55%) Frame = +3 Query: 357 FTSEKPELLLQQSKLYGAFSDSQICSWCARTLATLTARSRQEDRYGVAQLTGCNAAVMST 536 F S+ PE +Q FSD+Q+ W L+ L A S EDR+GV Q T A+++T Sbjct: 541 FFSKHPEASIQ-----AVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTT--LPAILNT 593 Query: 537 LLSALVAVE 563 LL+ AV+ Sbjct: 594 LLTLQEAVD 602 Score = 34.3 bits (77), Expect = 0.27 Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 5/103 (4%) Frame = +3 Query: 45 WEIIHHFVQVVHTRRCSFTPPQSSAAAETNPTDCILETLELSNPRSLLQYLAFQDLCAVS 224 W I ++ T F P Q A E++ +C+ + L SNP +++YLA QDL +S Sbjct: 285 WYISWILFKIYATEAYMF-PVQPPFAEESD--ECLPKVLN-SNPPLIIKYLALQDLMLLS 340 Query: 225 ECNIEPWRRGAFFEES-----GETYKRIVTACLKPLEDFTSKI 338 + P RR F S + I CL L D T K+ Sbjct: 341 Q--YSPSRRQEVFSLSQPGGHPHNWTAISRECLSLLNDMTQKL 381
>NDC1_PONPY (Q5RBY5) Nucleoporin NDC1 (Transmembrane protein 48)| Length = 674 Score = 40.8 bits (94), Expect = 0.003 Identities = 27/69 (39%), Positives = 38/69 (55%) Frame = +3 Query: 357 FTSEKPELLLQQSKLYGAFSDSQICSWCARTLATLTARSRQEDRYGVAQLTGCNAAVMST 536 F S+ PE +Q FSD+Q+ W L+ L A S EDR+GV Q T A+++T Sbjct: 542 FFSKHPEASIQ-----AVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTT--LPAILNT 594 Query: 537 LLSALVAVE 563 LL+ AV+ Sbjct: 595 LLTLQEAVD 603 Score = 29.6 bits (65), Expect = 6.6 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 5/71 (7%) Frame = +3 Query: 141 DCILETLELSNPRSLLQYLAFQDLCAVSECNIEPWRRGAFFEES-----GETYKRIVTAC 305 +C+ + L SNP +++YLA QDL S+ P RR F S + I C Sbjct: 313 ECLPKVLN-SNPPPIIKYLALQDLMLFSQ--YSPSRRQEVFSLSQPGGHPHNWTAISREC 369 Query: 306 LKPLEDFTSKI 338 L L T K+ Sbjct: 370 LNLLNGMTQKL 380
>NDC1_HUMAN (Q9BTX1) Nucleoporin NDC1 (hNDC1) (Transmembrane protein 48)| Length = 674 Score = 40.8 bits (94), Expect = 0.003 Identities = 27/69 (39%), Positives = 38/69 (55%) Frame = +3 Query: 357 FTSEKPELLLQQSKLYGAFSDSQICSWCARTLATLTARSRQEDRYGVAQLTGCNAAVMST 536 F S+ PE +Q FSD+Q+ W L+ L A S EDR+GV Q T A+++T Sbjct: 542 FFSKHPEASIQ-----AVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTT--LPAILNT 594 Query: 537 LLSALVAVE 563 LL+ AV+ Sbjct: 595 LLTLQEAVD 603 Score = 30.4 bits (67), Expect = 3.9 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 5/71 (7%) Frame = +3 Query: 141 DCILETLELSNPRSLLQYLAFQDLCAVSECNIEPWRRGAFFEES-----GETYKRIVTAC 305 +C+ + L SNP +++YLA QDL +S+ P RR F S + I C Sbjct: 313 ECLPKVLN-SNPPPIIKYLALQDLMLLSQ--YSPSRRQEVFSLSQPGGHPHNWTAISREC 369 Query: 306 LKPLEDFTSKI 338 L L T K+ Sbjct: 370 LNLLNGMTQKL 380
>NDC1_MOUSE (Q8VCB1) Nucleoporin NDC1 (Transmembrane protein 48)| Length = 673 Score = 40.0 bits (92), Expect = 0.005 Identities = 27/69 (39%), Positives = 37/69 (53%) Frame = +3 Query: 357 FTSEKPELLLQQSKLYGAFSDSQICSWCARTLATLTARSRQEDRYGVAQLTGCNAAVMST 536 F S+ PE +Q FSD+Q+ W L+ L A S EDR+GV Q T A++ T Sbjct: 541 FFSKHPEASIQ-----AVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTT--LPAILHT 593 Query: 537 LLSALVAVE 563 LL+ AV+ Sbjct: 594 LLTLQEAVD 602 Score = 33.9 bits (76), Expect = 0.35 Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 5/114 (4%) Frame = +3 Query: 12 IFIVTTCVSFCWEIIHHFVQVVHTRRCSFTPPQSSAAAETNPTDCILETLELSNPRSLLQ 191 +F++ T S W + + H PP + A+ E C+ + L SNP +++ Sbjct: 279 VFLLVTWYS-SWILFKIYATEAHV--FPVQPPFAEASDE-----CLPKVLN-SNPPRIVK 329 Query: 192 YLAFQDLCAVSECNIEPWRRGAFFEES-----GETYKRIVTACLKPLEDFTSKI 338 YLA QDL +S+ P RR F S + I CL L D T K+ Sbjct: 330 YLALQDLMLLSQ--YSPSRRQEVFSLSQPGGHPHNWTAISRECLNLLNDMTQKL 381
>NDC1_BRARE (Q7SZC5) Nucleoporin NDC1 (Transmembrane protein 48)| Length = 671 Score = 35.4 bits (80), Expect = 0.12 Identities = 21/60 (35%), Positives = 34/60 (56%) Frame = +3 Query: 384 LQQSKLYGAFSDSQICSWCARTLATLTARSRQEDRYGVAQLTGCNAAVMSTLLSALVAVE 563 L ++ F+DSQ W + L+ L A S ED++GV Q T +++S+L+ L AV+ Sbjct: 543 LPEASSQALFADSQAHIWALQGLSHLVAASFSEDQFGVVQTT--LPSILSSLVVLLEAVD 600
>NDC1_XENLA (Q6AX31) Nucleoporin NDC1 (xNDC1) (Transmembrane protein 48)| Length = 660 Score = 34.7 bits (78), Expect = 0.21 Identities = 21/51 (41%), Positives = 30/51 (58%) Frame = +3 Query: 411 FSDSQICSWCARTLATLTARSRQEDRYGVAQLTGCNAAVMSTLLSALVAVE 563 F+D+QI W L+ L A S EDR GV Q + ++V++ LL+ AVE Sbjct: 541 FADAQIHIWALEALSHLVAASFSEDRMGVVQTS--LSSVLAILLTLQEAVE 589 Score = 30.0 bits (66), Expect = 5.0 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 5/93 (5%) Frame = +3 Query: 75 VHTRRCSFTPPQSSAAAETNPTDCILETLELSNPRSLLQYLAFQDLCAVSECNIEPWRRG 254 ++T P Q+S A E C+ L SN L++YLA QDL +S+ P RR Sbjct: 281 IYTTEARIFPVQTSFAEEAEK--CLPFILN-SNTLPLVKYLAMQDLVLLSQ--YSPSRRQ 335 Query: 255 AFFEES-----GETYKRIVTACLKPLEDFTSKI 338 F S + I CL + TS++ Sbjct: 336 EVFSLSQPGGHPHNWTSISKECLNLMSSLTSRL 368
>YB1E_SCHPO (P87179) Serine-rich protein C30B4.01c precursor| Length = 374 Score = 31.6 bits (70), Expect = 1.7 Identities = 37/149 (24%), Positives = 68/149 (45%) Frame = -1 Query: 565 ASTATSADSKVDITAALQPVS*ATPYRSSCRERAVNVANVRAHHEHICESLNAP*SLDCC 386 +S+++S+ S +++ S ++ SS + + ++ + I S ++ S Sbjct: 164 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSS 223 Query: 385 NNSSGFSLVNPSSASAIFEVKSSSGFKQAVTILL*VSPDSSKKAPRRQGSMLHSDTAHKS 206 ++SS S PSS+S+ SSS F VT V+P SS + S + S TA + Sbjct: 224 SSSSSSSSSRPSSSSSFITTMSSSTFISTVT----VTPSSSSSS---TSSEVPSSTAALA 276 Query: 205 WNARYCNSDRGLLSSKVSRIQSVGLVSAA 119 NA ++ L + + I +G V+ A Sbjct: 277 LNASKASNHTSLNAGAIVGI-VIGCVAFA 304
>UL32_HHV11 (P10216) Probable major envelope glycoprotein UL32| Length = 596 Score = 31.2 bits (69), Expect = 2.3 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%) Frame = +3 Query: 108 QSSAAAETNPTDC--ILETLELSNPRSLLQYLAFQDLCAVSECNIEPW 245 Q A ET P D + L + P ++ +++ +CA++E ++PW Sbjct: 465 QLEADPETQPGDGGRFVSLLRAAGPEAIFKHMFCDPMCAITEMEVDPW 512
>RS7_METMP (Q6LXI3) 30S ribosomal protein S7P| Length = 188 Score = 30.4 bits (67), Expect = 3.9 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 8/90 (8%) Frame = +3 Query: 132 NPTDCILETLELSNPRSLLQYLAFQDLCAVSECNIEPWRR--GAF------FEESGETYK 287 NP +++ LE S PR +++ + + ++ P RR AF ES K Sbjct: 90 NPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASESAHKNK 149 Query: 288 RIVTACLKPLEDFTSKIAEALEGFTSEKPE 377 + V CL F SK A+ + F +K E Sbjct: 150 KTVAQCLADELIFASK-ADMQKSFAVKKKE 178
>ACEK_XANAC (Q8PFZ0) Isocitrate dehydrogenase kinase/phosphatase (EC 2.7.11.5)| (EC 3.1.3.-) (IDH kinase/phosphatase) (IDHK/P) Length = 579 Score = 30.4 bits (67), Expect = 3.9 Identities = 13/45 (28%), Positives = 24/45 (53%) Frame = +3 Query: 135 PTDCILETLELSNPRSLLQYLAFQDLCAVSECNIEPWRRGAFFEE 269 P D +L+ ++ + + Y + +LC ++ECN W A +EE Sbjct: 464 PGDMLLKNFGITRHQRAVFY-DYDELCLITECNFRDWPTPATYEE 507 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,783,874 Number of Sequences: 219361 Number of extensions: 1445647 Number of successful extensions: 4047 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3936 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4047 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4986986160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
