ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags17m06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK108514.1| Oryza sativa (japonica cultivar-group) cDNA clon... 440 e-120
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 335 1e-88
3dbj|AP004255.3| Oryza sativa (japonica cultivar-group) genomic D... 335 1e-88
4gb|AC151804.1| Solanum demissum chromosome 5 BAC PGEC475B22 geno... 62 2e-06
5gb|AC102517.7| Mus musculus chromosome 5, clone RP24-491H24, com... 44 0.51
6emb|CR762416.8| Zebrafish DNA sequence from clone DKEY-99N4 in l... 44 0.51
7gb|AC121837.2| Mus musculus BAC clone RP24-74E24 from 5, complet... 44 0.51
8gb|AC144476.11| Medicago truncatula clone mth2-10a6, complete se... 44 0.51
9gb|AC147431.19| Medicago truncatula clone mth2-88g17, complete s... 44 0.51
10gb|AC115050.23| Mus musculus chromosome 3, clone RP24-338K10, co... 44 0.51
11emb|CR735121.16| Zebrafish DNA sequence from clone DKEY-42H23 in... 44 0.51
12gb|AC145863.3| Pan troglodytes BAC clone RP43-6J8 from 7, comple... 42 2.0
13gb|AC007567.2| Homo sapiens BAC clone CTB-36G2 from 7, complete ... 42 2.0
14gb|AC146211.3| Pan troglodytes BAC clone RP43-33E10 from 7, comp... 42 2.0
15gb|AC022025.8| Homo sapiens chromosome 10 clone RP11-489D8, comp... 42 2.0
16gb|AC110778.4| Homo sapiens BAC clone RP11-320L7 from 4, complet... 42 2.0
17gb|AC008258.4|AC008258 Drosophila melanogaster, chromosome 2R, r... 42 2.0
18gb|AC152939.2| Mus musculus BAC clone RP23-312I2 from chromosome... 42 2.0
19gb|AC007249.5| Homo sapiens BAC clone RP11-320M2 from 2, complet... 42 2.0
20gb|AE003841.5| Drosophila melanogaster chromosome 2R, section 9 ... 42 2.0
21emb|BX537743.1|HSM805824 Homo sapiens mRNA; cDNA DKFZp686E2388 (... 42 2.0
22gb|AC004280.1|AC004280 Drosophila melanogaster DNA sequence (P1 ... 42 2.0
23gb|AC149607.6| Mus musculus BAC clone RP23-455C13 from chromosom... 42 2.0
24gb|DP000017.1| Sus scrofa target 1 genomic scaffold 40 7.9
25gb|AC121499.9| Mus musculus chromosome 9, clone RP23-269E5, comp... 40 7.9
26gb|AC087424.2| Sus scrofa clone RP44-56M21, complete sequence 40 7.9
27gb|AY810630.1| Schistosoma japonicum SJCHGC05675 protein mRNA, p... 40 7.9
28gb|AC145449.8| Medicago truncatula clone mth2-20m15, complete se... 40 7.9
29gb|AE008721.1| Salmonella typhimurium LT2, section 29 of 220 of ... 40 7.9
30emb|AL607000.3|OSJN00132 Oryza sativa genomic DNA, chromosome 4,... 40 7.9
31emb|AJ829704.1| Escherichia coli genome fragment containing the ... 40 7.9
32emb|AL603708.13| Mouse DNA sequence from clone RP23-381C21 on ch... 40 7.9
33gb|AC112175.2| Homo sapiens chromosome 5 clone CTD-2568P10, comp... 40 7.9
34gb|AC106000.6| Homo sapiens chromosome 15, clone RP11-61N5, comp... 40 7.9
35gb|AC097518.2| Homo sapiens BAC clone RP11-487E13 from 4, comple... 40 7.9
36dbj|AK153393.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 40 7.9
37gb|AC026688.7| Homo sapiens chromosome 5 clone CTB-158E9, comple... 40 7.9
38gb|AC016355.8| Homo sapiens chromosome 15, clone RP11-502I4, com... 40 7.9
39dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
40gb|L19338.1|STYFIMCLUS Salmonella typhimurium fimbrial gene clus... 40 7.9
41emb|AL845440.23| Mouse DNA sequence from clone RP23-294B7 on chr... 40 7.9
42emb|BX088590.7| Pig DNA sequence from clone XX-591C4, complete s... 40 7.9
43gb|AC097355.15| Mus musculus strain C57BL/6J chromosome 2 clone ... 40 7.9
44gb|AC166175.2| Mus musculus BAC clone RP23-53H1 from chromosome ... 40 7.9
45emb|AL845285.5| Mouse DNA sequence from clone RP23-167M2 on chro... 40 7.9
46emb|AL929137.5| Mouse DNA sequence from clone RP23-412L18 on chr... 40 7.9 
>dbj|AK108514.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-A08, full
           insert sequence
          Length = 813

 Score =  440 bits (222), Expect = e-120
 Identities = 384/438 (87%)
 Strand = Plus / Plus

                                                                       
Query: 146 tatcctcgagactttggaactaagtaatccacggtcactgttgcaatatcttgcattcca 205
           |||||| || || |||||||| ||| ||||| | |||||  |||| |||||||||| |||
Sbjct: 8   tatcctagaaacattggaactgagtgatccaagatcactaatgcagtatcttgcatacca 67

                                                                       
Query: 206 agatttgtgtgcagtatctgaatgtaacatcgaaccttggcgtcgaggtgccttcttcga 265
           |||||||||||| ||||||||||||||| | ||||| ||||||||||  |||||||| ||
Sbjct: 68  agatttgtgtgctgtatctgaatgtaacttagaaccatggcgtcgagcggccttctttga 127

                                                                       
Query: 266 ggaatctggtgaaacttacaaaagaattgtgacagcctgtttgaagccacttgaggactt 325
           |||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct: 128 ggaatctggtgagacttacaaaagaattgtgacagcttgtttgaagccgcttgaggagtt 187

                                                                       
Query: 326 cacttcaaaaattgctgaagcacttgaagggtttactagcgaaaagccagaactattgtt 385
           ||| ||||||||||||||||| |||||||||||| |||| || || |||||| | |||| 
Sbjct: 188 cacgtcaaaaattgctgaagctcttgaagggttttctagtgagaaaccagaattgttgtc 247

                                                                       
Query: 386 acaacagtctaagctctatggtgcatttagtgattcacagatatgctcatggtgtgctcg 445
           ||||||||  || ||   || |||||||| |||||||||||||||| ||||||| |||||
Sbjct: 248 acaacagttcaaacttgctgctgcatttaatgattcacagatatgcacatggtgcgctcg 307

                                                                       
Query: 446 gacattggctacattaactgcacgctcacgacaagaggaccggtatggagttgctcaact 505
           ||||||| |  | ||||||||||| ||||| ||||| || ||||||||||||||||||||
Sbjct: 308 gacattgtcatctttaactgcacggtcacgccaagaagatcggtatggagttgctcaact 367

                                                                       
Query: 506 cactggctgcaatgctgctgtgatgtctactttgctgtctgcgctagttgcggttgaagc 565
           ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 368 cacaggctgcaatgctgctgtgatgtctactttgctgtctgcgctagttgccgttgaggc 427

                             
Query: 566 atgtttagggaagaaaac 583
            ||||| |||||||||||
Sbjct: 428 ctgtttggggaagaaaac 445
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  335 bits (169), Expect = 1e-88
 Identities = 286/325 (88%)
 Strand = Plus / Plus

                                                                            
Query: 69       caggttgtgcatacaagaagatgcagttttactccacctcagagctctgctgctgcggag 128
                |||||||||||||||||||| ||||||||  ||||||| |||||| |||||||||| |||
Sbjct: 28005014 caggttgtgcatacaagaaggtgcagtttcgctccaccacagagcactgctgctgcagag 28005073

                                                                            
Query: 129      actaatcctactgattgtatcctcgagactttggaactaagtaatccacggtcactgttg 188
                |||||||||||||| | |||||| || || |||||||| ||| ||||| | |||||  ||
Sbjct: 28005074 actaatcctactgagtatatcctagaaacattggaactgagtgatccaagatcactaatg 28005133

                                                                            
Query: 189      caatatcttgcattccaagatttgtgtgcagtatctgaatgtaacatcgaaccttggcgt 248
                || |||||||||| ||||||||||||||| ||||||||||||||| | ||||| ||||||
Sbjct: 28005134 cagtatcttgcataccaagatttgtgtgctgtatctgaatgtaacttagaaccatggcgt 28005193

                                                                            
Query: 249      cgaggtgccttcttcgaggaatctggtgaaacttacaaaagaattgtgacagcctgtttg 308
                ||||  |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 28005194 cgagcggccttctttgaggaatctggtgagacttacaaaagaattgtgacagcttgtttg 28005253

                                                                            
Query: 309      aagccacttgaggacttcacttcaaaaattgctgaagcacttgaagggtttactagcgaa 368
                ||||| |||||||| ||||| ||||||||||||||||| |||||||||||| |||| || 
Sbjct: 28005254 aagccgcttgaggagttcacgtcaaaaattgctgaagctcttgaagggttttctagtgag 28005313

                                         
Query: 369      aagccagaactattgttacaacagt 393
                || |||||| | |||| ||||||||
Sbjct: 28005314 aaaccagaattgttgtcacaacagt 28005338



 Score =  198 bits (100), Expect = 1e-47
 Identities = 145/160 (90%)
 Strand = Plus / Plus

                                                                            
Query: 424      agatatgctcatggtgtgctcggacattggctacattaactgcacgctcacgacaagagg 483
                |||||||| ||||||| |||||||||||| |  | ||||||||||| ||||| ||||| |
Sbjct: 28006867 agatatgcacatggtgcgctcggacattgtcatctttaactgcacggtcacgccaagaag 28006926

                                                                            
Query: 484      accggtatggagttgctcaactcactggctgcaatgctgctgtgatgtctactttgctgt 543
                | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 28006927 atcggtatggagttgctcaactcacaggctgcaatgctgctgtgatgtctactttgctgt 28006986

                                                        
Query: 544      ctgcgctagttgcggttgaagcatgtttagggaagaaaac 583
                ||||||||||||| ||||| || ||||| |||||||||||
Sbjct: 28006987 ctgcgctagttgccgttgaggcctgtttggggaagaaaac 28007026



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                            
Query: 1        cccaaatcgctatttttatagtgaccacatgtgtttccttttgttgggaaataatccatc 60
                ||||||||| |||||||||| ||| |||    ||| |||| |||||||||||||  ||||
Sbjct: 28004803 cccaaatcggtatttttataatgagcactgccgttgccttctgttgggaaataagtcatc 28004862

                              
Query: 61       attttgtccaggtt 74
                ||||||||||||||
Sbjct: 28004863 attttgtccaggtt 28004876
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>dbj|AP004255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1212_A08
          Length = 119304

 Score =  335 bits (169), Expect = 1e-88
 Identities = 286/325 (88%)
 Strand = Plus / Plus

                                                                         
Query: 69    caggttgtgcatacaagaagatgcagttttactccacctcagagctctgctgctgcggag 128
             |||||||||||||||||||| ||||||||  ||||||| |||||| |||||||||| |||
Sbjct: 48676 caggttgtgcatacaagaaggtgcagtttcgctccaccacagagcactgctgctgcagag 48735

                                                                         
Query: 129   actaatcctactgattgtatcctcgagactttggaactaagtaatccacggtcactgttg 188
             |||||||||||||| | |||||| || || |||||||| ||| ||||| | |||||  ||
Sbjct: 48736 actaatcctactgagtatatcctagaaacattggaactgagtgatccaagatcactaatg 48795

                                                                         
Query: 189   caatatcttgcattccaagatttgtgtgcagtatctgaatgtaacatcgaaccttggcgt 248
             || |||||||||| ||||||||||||||| ||||||||||||||| | ||||| ||||||
Sbjct: 48796 cagtatcttgcataccaagatttgtgtgctgtatctgaatgtaacttagaaccatggcgt 48855

                                                                         
Query: 249   cgaggtgccttcttcgaggaatctggtgaaacttacaaaagaattgtgacagcctgtttg 308
             ||||  |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 48856 cgagcggccttctttgaggaatctggtgagacttacaaaagaattgtgacagcttgtttg 48915

                                                                         
Query: 309   aagccacttgaggacttcacttcaaaaattgctgaagcacttgaagggtttactagcgaa 368
             ||||| |||||||| ||||| ||||||||||||||||| |||||||||||| |||| || 
Sbjct: 48916 aagccgcttgaggagttcacgtcaaaaattgctgaagctcttgaagggttttctagtgag 48975

                                      
Query: 369   aagccagaactattgttacaacagt 393
             || |||||| | |||| ||||||||
Sbjct: 48976 aaaccagaattgttgtcacaacagt 49000



 Score =  198 bits (100), Expect = 1e-47
 Identities = 145/160 (90%)
 Strand = Plus / Plus

                                                                         
Query: 424   agatatgctcatggtgtgctcggacattggctacattaactgcacgctcacgacaagagg 483
             |||||||| ||||||| |||||||||||| |  | ||||||||||| ||||| ||||| |
Sbjct: 50529 agatatgcacatggtgcgctcggacattgtcatctttaactgcacggtcacgccaagaag 50588

                                                                         
Query: 484   accggtatggagttgctcaactcactggctgcaatgctgctgtgatgtctactttgctgt 543
             | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 50589 atcggtatggagttgctcaactcacaggctgcaatgctgctgtgatgtctactttgctgt 50648

                                                     
Query: 544   ctgcgctagttgcggttgaagcatgtttagggaagaaaac 583
             ||||||||||||| ||||| || ||||| |||||||||||
Sbjct: 50649 ctgcgctagttgccgttgaggcctgtttggggaagaaaac 50688



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                         
Query: 1     cccaaatcgctatttttatagtgaccacatgtgtttccttttgttgggaaataatccatc 60
             ||||||||| |||||||||| ||| |||    ||| |||| |||||||||||||  ||||
Sbjct: 48465 cccaaatcggtatttttataatgagcactgccgttgccttctgttgggaaataagtcatc 48524

                           
Query: 61    attttgtccaggtt 74
             ||||||||||||||
Sbjct: 48525 attttgtccaggtt 48538
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>gb|AC151804.1| Solanum demissum chromosome 5 BAC PGEC475B22 genomic sequence, complete
             sequence
          Length = 104138

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                
Query: 240   ccttggcgtcgaggtgccttcttcgaggaatctggtgaaacttacaaaaga 290
             |||||||| |||| ||||||||| ||||||  |||||||||||||||||||
Sbjct: 79944 ccttggcgccgagctgccttctttgaggaaagtggtgaaacttacaaaaga 79894
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>gb|AC102517.7| Mus musculus chromosome 5, clone RP24-491H24, complete sequence
          Length = 186022

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 56     ccatcattttgtccaggttgtg 77
              ||||||||||||||||||||||
Sbjct: 108883 ccatcattttgtccaggttgtg 108862
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>emb|CR762416.8| Zebrafish DNA sequence from clone DKEY-99N4 in linkage group 9,
             complete sequence
          Length = 100931

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 337   ttgctgaagcacttgaagggtt 358
             ||||||||||||||||||||||
Sbjct: 13665 ttgctgaagcacttgaagggtt 13644
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>gb|AC121837.2| Mus musculus BAC clone RP24-74E24 from 5, complete sequence
          Length = 179290

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 56     ccatcattttgtccaggttgtg 77
              ||||||||||||||||||||||
Sbjct: 171745 ccatcattttgtccaggttgtg 171766
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>gb|AC144476.11| Medicago truncatula clone mth2-10a6, complete sequence
          Length = 119355

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 73    ttgtgcatacaagaagatgcag 94
             ||||||||||||||||||||||
Sbjct: 28334 ttgtgcatacaagaagatgcag 28313
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>gb|AC147431.19| Medicago truncatula clone mth2-88g17, complete sequence
          Length = 145905

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 73   ttgtgcatacaagaagatgcag 94
            ||||||||||||||||||||||
Sbjct: 8215 ttgtgcatacaagaagatgcag 8194
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>gb|AC115050.23| Mus musculus chromosome 3, clone RP24-338K10, complete sequence
          Length = 163265

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 335   aattgctgaagcacttgaaggg 356
             ||||||||||||||||||||||
Sbjct: 62824 aattgctgaagcacttgaaggg 62803
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>emb|CR735121.16| Zebrafish DNA sequence from clone DKEY-42H23 in linkage group 9,
             complete sequence
          Length = 114991

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 337   ttgctgaagcacttgaagggtt 358
             ||||||||||||||||||||||
Sbjct: 28826 ttgctgaagcacttgaagggtt 28805
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>gb|AC145863.3| Pan troglodytes BAC clone RP43-6J8 from 7, complete sequence
          Length = 190714

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 187    tgcaatatcttgcattccaag 207
              |||||||||||||||||||||
Sbjct: 150245 tgcaatatcttgcattccaag 150265
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>gb|AC007567.2| Homo sapiens BAC clone CTB-36G2 from 7, complete sequence
          Length = 187413

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 187    tgcaatatcttgcattccaag 207
              |||||||||||||||||||||
Sbjct: 146713 tgcaatatcttgcattccaag 146693
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>gb|AC146211.3| Pan troglodytes BAC clone RP43-33E10 from 7, complete sequence
          Length = 164849

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 187  tgcaatatcttgcattccaag 207
            |||||||||||||||||||||
Sbjct: 8375 tgcaatatcttgcattccaag 8395
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>gb|AC022025.8| Homo sapiens chromosome 10 clone RP11-489D8, complete sequence
          Length = 189762

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 155    gactttggaactaagtaatcc 175
              |||||||||||||||||||||
Sbjct: 132770 gactttggaactaagtaatcc 132790
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>gb|AC110778.4| Homo sapiens BAC clone RP11-320L7 from 4, complete sequence
          Length = 98569

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 215   tgcagtatctgaatgtaacat 235
             |||||||||||||||||||||
Sbjct: 70534 tgcagtatctgaatgtaacat 70554
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>gb|AC008258.4|AC008258 Drosophila melanogaster, chromosome 2R, region 43C-43C, BAC clone
             BACR04G20, complete sequence
          Length = 184079

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 172   atccacggtcactgttgcaat 192
             |||||||||||||||||||||
Sbjct: 84418 atccacggtcactgttgcaat 84398
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>gb|AC152939.2| Mus musculus BAC clone RP23-312I2 from chromosome 7, complete sequence
          Length = 205980

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 212    gtgtgcagtatctgaatgtaa 232
              |||||||||||||||||||||
Sbjct: 177332 gtgtgcagtatctgaatgtaa 177312
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>gb|AC007249.5| Homo sapiens BAC clone RP11-320M2 from 2, complete sequence
          Length = 200491

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 101    tccacctcagagctctgctgc 121
              |||||||||||||||||||||
Sbjct: 168962 tccacctcagagctctgctgc 168982
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>gb|AE003841.5| Drosophila melanogaster chromosome 2R, section 9 of 73 of the complete
              sequence
          Length = 266427

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 172    atccacggtcactgttgcaat 192
              |||||||||||||||||||||
Sbjct: 240682 atccacggtcactgttgcaat 240662
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>emb|BX537743.1|HSM805824 Homo sapiens mRNA; cDNA DKFZp686E2388 (from clone DKFZp686E2388)
          Length = 3699

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 187  tgcaatatcttgcattccaag 207
            |||||||||||||||||||||
Sbjct: 2786 tgcaatatcttgcattccaag 2766
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>gb|AC004280.1|AC004280 Drosophila melanogaster DNA sequence (P1 DS01142 (D148)), complete
             sequence
          Length = 78174

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 172   atccacggtcactgttgcaat 192
             |||||||||||||||||||||
Sbjct: 48748 atccacggtcactgttgcaat 48728
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>gb|AC149607.6| Mus musculus BAC clone RP23-455C13 from chromosome 7, complete sequence
          Length = 206284

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 212    gtgtgcagtatctgaatgtaa 232
              |||||||||||||||||||||
Sbjct: 131464 gtgtgcagtatctgaatgtaa 131484
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>gb|DP000017.1| Sus scrofa target 1 genomic scaffold
          Length = 1471440

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 33     gtttccttttgttgggaaataatccatc 60
              |||||||||| | |||||||||||||||
Sbjct: 315127 gtttccttttctagggaaataatccatc 315100
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>gb|AC121499.9| Mus musculus chromosome 9, clone RP23-269E5, complete sequence
          Length = 212061

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   cctcagagctctgctgctgc 124
             ||||||||||||||||||||
Sbjct: 15664 cctcagagctctgctgctgc 15683
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>gb|AC087424.2| Sus scrofa clone RP44-56M21, complete sequence
          Length = 163787

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 33    gtttccttttgttgggaaataatccatc 60
             |||||||||| | |||||||||||||||
Sbjct: 82925 gtttccttttctagggaaataatccatc 82898
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>gb|AY810630.1| Schistosoma japonicum SJCHGC05675 protein mRNA, partial cds
          Length = 2000

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 182 actgttgcaatatcttgcat 201
           ||||||||||||||||||||
Sbjct: 790 actgttgcaatatcttgcat 809
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>gb|AC145449.8| Medicago truncatula clone mth2-20m15, complete sequence
          Length = 122694

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 327    acttcaaaaattgctgaagc 346
              ||||||||||||||||||||
Sbjct: 102407 acttcaaaaattgctgaagc 102426
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>gb|AE008721.1| Salmonella typhimurium LT2, section 29 of 220 of the complete genome
          Length = 19985

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 415   gtgattcacagatatgctca 434
             ||||||||||||||||||||
Sbjct: 14763 gtgattcacagatatgctca 14744
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>emb|AL607000.3|OSJN00132 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089B03,
             complete sequence
          Length = 130910

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    atacaagaagatgcagtttt 98
             ||||||||||||||||||||
Sbjct: 68512 atacaagaagatgcagtttt 68531
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>emb|AJ829704.1| Escherichia coli genome fragment containing the GimA island, strain A0
             34/86
          Length = 55489

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     caaatcgctatttttatagt 22
             ||||||||||||||||||||
Sbjct: 46254 caaatcgctatttttatagt 46235
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>emb|AL603708.13| Mouse DNA sequence from clone RP23-381C21 on chromosome 11, complete
              sequence
          Length = 198743

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 104    acctcagagctctgctgctg 123
              ||||||||||||||||||||
Sbjct: 122868 acctcagagctctgctgctg 122849
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>gb|AC112175.2| Homo sapiens chromosome 5 clone CTD-2568P10, complete sequence
          Length = 142712

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 370    agccagaactattgttacaa 389
              ||||||||||||||||||||
Sbjct: 124274 agccagaactattgttacaa 124255
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>gb|AC106000.6| Homo sapiens chromosome 15, clone RP11-61N5, complete sequence
          Length = 159704

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    cacatgtgtttccttttgtt 45
             ||||||||||||||||||||
Sbjct: 50196 cacatgtgtttccttttgtt 50177
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>gb|AC097518.2| Homo sapiens BAC clone RP11-487E13 from 4, complete sequence
          Length = 189323

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 410   atttagtgattcacagatat 429
             ||||||||||||||||||||
Sbjct: 66617 atttagtgattcacagatat 66598
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>dbj|AK153393.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched
            library, clone:I830153K09 product:unclassifiable, full
            insert sequence
          Length = 4063

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 105  cctcagagctctgctgctgc 124
            ||||||||||||||||||||
Sbjct: 1477 cctcagagctctgctgctgc 1458
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>gb|AC026688.7| Homo sapiens chromosome 5 clone CTB-158E9, complete sequence
          Length = 134778

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 370   agccagaactattgttacaa 389
             ||||||||||||||||||||
Sbjct: 97941 agccagaactattgttacaa 97960
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>gb|AC016355.8| Homo sapiens chromosome 15, clone RP11-502I4, complete sequence
          Length = 186428

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 26     cacatgtgtttccttttgtt 45
              ||||||||||||||||||||
Sbjct: 179722 cacatgtgtttccttttgtt 179703
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 79       atacaagaagatgcagtttt 98
                ||||||||||||||||||||
Sbjct: 18600646 atacaagaagatgcagtttt 18600665
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>gb|L19338.1|STYFIMCLUS Salmonella typhimurium fimbrial gene cluster, complete sequence
          Length = 12168

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 415   gtgattcacagatatgctca 434
             ||||||||||||||||||||
Sbjct: 10728 gtgattcacagatatgctca 10709
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>emb|AL845440.23| Mouse DNA sequence from clone RP23-294B7 on chromosome 2, complete
             sequence
          Length = 188464

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 310   agccacttgaggacttcacttcaa 333
             |||||||||||||||||| |||||
Sbjct: 91592 agccacttgaggacttcagttcaa 91615
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>emb|BX088590.7| Pig DNA sequence from clone XX-591C4, complete sequence
          Length = 165790

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 187    tgcaatatcttgcattccaa 206
              ||||||||||||||||||||
Sbjct: 140336 tgcaatatcttgcattccaa 140317
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>gb|AC097355.15| Mus musculus strain C57BL/6J chromosome 2 clone rp23-304j8, complete
              sequence
          Length = 163774

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 381    ttgttacaacagtctaagct 400
              ||||||||||||||||||||
Sbjct: 130688 ttgttacaacagtctaagct 130669
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>gb|AC166175.2| Mus musculus BAC clone RP23-53H1 from chromosome 9, complete sequence
          Length = 264591

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   cctcagagctctgctgctgc 124
             ||||||||||||||||||||
Sbjct: 24386 cctcagagctctgctgctgc 24367
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>emb|AL845285.5| Mouse DNA sequence from clone RP23-167M2 on chromosome 2, complete
             sequence
          Length = 143280

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 563   agcatgtttagggaagaaaa 582
             ||||||||||||||||||||
Sbjct: 50053 agcatgtttagggaagaaaa 50034
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>emb|AL929137.5| Mouse DNA sequence from clone RP23-412L18 on chromosome 2, complete
              sequence
          Length = 221534

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 381    ttgttacaacagtctaagct 400
              ||||||||||||||||||||
Sbjct: 216227 ttgttacaacagtctaagct 216208


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,181,208
Number of Sequences: 3902068
Number of extensions: 5181208
Number of successful extensions: 94271
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94112
Number of HSP's gapped (non-prelim): 158
length of query: 583
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 560
effective length of database: 17,143,297,704
effective search space: 9600246714240
effective search space used: 9600246714240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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