| Clone Name | bags18b01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK062254.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-G06, full insert sequence Length = 1642 Score = 490 bits (247), Expect = e-135 Identities = 472/547 (86%) Strand = Plus / Plus Query: 5 gctatcgagtccttcgcgttggagcagctggaagcgaacgctgcaccacctgaagtttct 64 |||||||||||||| || ||||||||| ||||||| || ||||| ||||||||||||||| Sbjct: 883 gctatcgagtcctttgcattggagcagttggaagccaatgctgctccacctgaagtttct 942 Query: 65 gagttgactagcgcagatgtgatggaagagaagtgtgcttctgctgccatttgctttgtg 124 ||||||||| || |||| | ||||||||||| |||||||||||||||||||||||||| Sbjct: 943 gagttgactggcccagacgccatggaagagaaatgtgcttctgctgccatttgctttgta 1002 Query: 125 tctttccttccagacatcctggactcaaaggcagaaggaagaaacaagtaccttgagctg 184 |||||||||||||| ||| |||| |||||||| ||||||||||||||||||||||||||| Sbjct: 1003 tctttccttccagatatcttggattcaaaggccgaaggaagaaacaagtaccttgagctg 1062 Query: 185 ctactatctgttgctgagaaatttaagaagagtccatacagttttgtctgggcaggcgcc 244 ||| |||||||||||||||||||||| |||||||||||||||||||||||| ||| || Sbjct: 1063 ctattatctgttgctgagaaatttaaaaagagtccatacagttttgtctggacagctgct 1122 Query: 245 ggcaagcaagctgatctggagaagcaggtcggagtcggtggctatggctatccagccatg 304 || |||||||||||||| |||||||| || ||||| ||||| |||||||||||||| ||| Sbjct: 1123 gggaagcaagctgatcttgagaagcaagttggagttggtggttatggctatccagcgatg 1182 Query: 305 gtcgctctcaacgtgaagaaaggcgcatacgctccgctccgtagcgccttcgagctcgcc 364 || || ||||||||||| ||||||||||| ||||| |||||||| || ||| |||| | Sbjct: 1183 gttgccctcaacgtgaaaaaaggcgcatatgctccactccgtagtgctttccagcttgat 1242 Query: 365 gaaatcaccgagtttgtgaaggaggcagggcgcggcggaaagggcaaccttcctctggag 424 ||||| || |||||||||| ||| ||||||||||| || ||||| || |||||| |||| Sbjct: 1243 gaaataactgagtttgtgagggaagcagggcgcggtgggaagggtaatcttcctttggac 1302 Query: 425 ggcgccccgacggtggtccagtcggaaccatgggacggcaaggatggagaggtcatcgag 484 || |||| ||| | ||||| || ||||||||||||||||| ||||| ||||| || || Sbjct: 1303 ggtaccccaacgatagtccaatctgaaccatgggacggcaaagatggtgaggttattgaa 1362 Query: 485 gaggacgagttctcgctcgaggagctcatggcggacagctctgcgcccaacgacgagttg 544 |||||||| ||||| || |||||||| ||||| |||| |||| | || ||||||||| Sbjct: 1363 gaggacgaattctcccttgaggagctgatggccgacaactctccagtaaatgacgagttg 1422 Query: 545 tgattct 551 ||||||| Sbjct: 1423 tgattct 1429
>gb|AY739290.1| Zea mays protein disulfide isomerase (PDIL2-3) mRNA, complete cds Length = 1531 Score = 448 bits (226), Expect = e-122 Identities = 430/498 (86%) Strand = Plus / Plus Query: 54 ctgaagtttctgagttgactagcgcagatgtgatggaagagaagtgtgcttctgctgcca 113 |||||||||||||||||||| || | ||||| |||||||||||||| ||||||||||||| Sbjct: 877 ctgaagtttctgagttgactggcccggatgtcatggaagagaagtgcgcttctgctgcca 936 Query: 114 tttgctttgtgtctttccttccagacatcctggactcaaaggcagaaggaagaaacaagt 173 |||| ||||| || ||||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 937 tttgttttgtatcattccttccagacatccttgattcaaaggcagaaggaagaaacaagt 996 Query: 174 accttgagctgctactatctgttgctgagaaatttaagaagagtccatacagttttgtct 233 |||||||||| || || ||||| |||||||| ||||| |||||||||||||||||||||| Sbjct: 997 accttgagctcctgctctctgtagctgagaagtttaaaaagagtccatacagttttgtct 1056 Query: 234 gggcaggcgccggcaagcaagctgatctggagaagcaggtcggagtcggtggctatggct 293 || ||| || |||||||||||| |||| ||||| ||||| || || || ||||| |||| Sbjct: 1057 ggacagctgctggcaagcaagctaatctcgagaaccaggttggtgtgggcggctacggct 1116 Query: 294 atccagccatggtcgctctcaacgtgaagaaaggcgcatacgctccgctccgtagcgcct 353 |||| |||||||| |||||||||||||||||||| ||||||||||| |||||||| |||| Sbjct: 1117 atcccgccatggtagctctcaacgtgaagaaaggtgcatacgctccactccgtagtgcct 1176 Query: 354 tcgagctcgccgaaatcaccgagtttgtgaaggaggcagggcgcggcggaaagggcaacc 413 || ||| || |||||||| |||||| ||||||||||||||||| || |||||||| |||| Sbjct: 1177 tccagcgcgacgaaatcatcgagttcgtgaaggaggcagggcgtggtggaaagggaaacc 1236 Query: 414 ttcctctggagggcgccccgacggtggtccagtcggaaccatgggacggcaaggatggag 473 |||||||| | | || || || || ||| ||| || || ||||||||||| ||||||| Sbjct: 1237 ttcctctgaacgatgcacctacagtagtcgcgtccgagccgtgggacggcaaagatggag 1296 Query: 474 aggtcatcgaggaggacgagttctcgctcgaggagctcatggcggacagctctgcgccca 533 ||||||| |||||||| || ||||| ||||| |||||||||| |||||||| | | | Sbjct: 1297 aggtcattgaggaggatgaattctccctcgacgagctcatgggcgacagctcctcagcaa 1356 Query: 534 acgacgagttgtgattct 551 |||| ||||||||||||| Sbjct: 1357 acgatgagttgtgattct 1374
>dbj|AK072941.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150F04, full insert sequence Length = 1738 Score = 424 bits (214), Expect = e-115 Identities = 403/466 (86%) Strand = Plus / Plus Query: 86 atggaagagaagtgtgcttctgctgccatttgctttgtgtctttccttccagacatcctg 145 ||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||| || Sbjct: 1108 atggaagagaaatgtgcttctgctgccatttgctttgtatctttccttccagatatcttg 1167 Query: 146 gactcaaaggcagaaggaagaaacaagtaccttgagctgctactatctgttgctgagaaa 205 || |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 1168 gattcaaaggccgaaggaagaaacaagtaccttgagctgctattatctgttgctgagaaa 1227 Query: 206 tttaagaagagtccatacagttttgtctgggcaggcgccggcaagcaagctgatctggag 265 ||||| |||||||||||||||||||||||| ||| || || |||||||||||||| ||| Sbjct: 1228 tttaaaaagagtccatacagttttgtctggacagctgctgggaagcaagctgatcttgag 1287 Query: 266 aagcaggtcggagtcggtggctatggctatccagccatggtcgctctcaacgtgaagaaa 325 ||||| || ||||| ||||| |||||||||||||| ||||| |||| ||||||||| ||| Sbjct: 1288 aagcaagttggagttggtggttatggctatccagcgatggttgctcacaacgtgaaaaaa 1347 Query: 326 ggcgcatacgctccgctccgtagcgccttcgagctcgccgaaatcaccgagtttgtgaag 385 |||||||| ||||| |||||||| || ||| |||| | ||||| || |||||||||||| Sbjct: 1348 ggcgcatatgctccactccgtagtgctttccagcttgatgaaataactgagtttgtgaag 1407 Query: 386 gaggcagggcgcggcggaaagggcaaccttcctctggagggcgccccgacggtggtccag 445 || ||||||||||| || ||||| || |||||| |||| || |||| ||| | ||||| Sbjct: 1408 gaagcagggcgcggtgggaagggtaatcttcctttggacggtaccccaacgatagtccaa 1467 Query: 446 tcggaaccatgggacggcaaggatggagaggtcatcgaggaggacgagttctcgctcgag 505 || ||||||||||||||||| ||||| ||||| || || |||||||| ||||| || ||| Sbjct: 1468 tctgaaccatgggacggcaaagatggtgaggttattgaagaggacgaattctcccttgag 1527 Query: 506 gagctcatggcggacagctctgcgcccaacgacgagttgtgattct 551 ||||| ||||| |||| |||| | || |||||||||||||||| Sbjct: 1528 gagctgatggccgacaactctccagtaaatgacgagttgtgattct 1573 Score = 89.7 bits (45), Expect = 1e-14 Identities = 63/69 (91%) Strand = Plus / Plus Query: 5 gctatcgagtccttcgcgttggagcagctggaagcgaacgctgcaccacctgaagtttct 64 |||||||||||||| || ||||||||| ||||||| || ||||| ||||||||||||||| Sbjct: 938 gctatcgagtcctttgcattggagcagttggaagccaatgctgctccacctgaagtttct 997 Query: 65 gagttgact 73 ||||||||| Sbjct: 998 gagttgact 1006
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 214 bits (108), Expect = 3e-52 Identities = 132/140 (94%) Strand = Plus / Plus Query: 86 atggaagagaagtgtgcttctgctgccatttgctttgtgtctttccttccagacatcctg 145 ||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||| || Sbjct: 16880090 atggaagagaaatgtgcttctgctgccatttgctttgtatctttccttccagatatcttg 16880149 Query: 146 gactcaaaggcagaaggaagaaacaagtaccttgagctgctactatctgttgctgagaaa 205 || |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 16880150 gattcaaaggccgaaggaagaaacaagtaccttgagctgctattatctgttgctgagaaa 16880209 Query: 206 tttaagaagagtccatacag 225 ||||| |||||||||||||| Sbjct: 16880210 tttaaaaagagtccatacag 16880229 Score = 131 bits (66), Expect = 3e-27 Identities = 111/126 (88%) Strand = Plus / Plus Query: 223 cagttttgtctgggcaggcgccggcaagcaagctgatctggagaagcaggtcggagtcgg 282 ||||||||||||| ||| || || |||||||||||||| |||||||| || ||||| || Sbjct: 16880630 cagttttgtctggacagctgctgggaagcaagctgatcttgagaagcaagttggagttgg 16880689 Query: 283 tggctatggctatccagccatggtcgctctcaacgtgaagaaaggcgcatacgctccgct 342 ||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||||| || Sbjct: 16880690 tggttatggctatccagcgatggttgctctcaacgtgaaaaaaggcgcatatgctccact 16880749 Query: 343 ccgtag 348 |||||| Sbjct: 16880750 ccgtag 16880755 Score = 107 bits (54), Expect = 4e-20 Identities = 147/178 (82%) Strand = Plus / Plus Query: 374 gagtttgtgaaggaggcagggcgcggcggaaagggcaaccttcctctggagggcgccccg 433 |||||||||||||| ||||||||||| || ||||| || |||||| |||| || |||| Sbjct: 16880863 gagtttgtgaaggaagcagggcgcggtgggaagggtaatcttcctttggacggtacccca 16880922 Query: 434 acggtggtccagtcggaaccatgggacggcaaggatggagaggtcatcgaggaggacgag 493 ||| | ||||| || ||||||||||||||||| ||||| ||||| || || |||||||| Sbjct: 16880923 acgatagtccaatctgaaccatgggacggcaaagatggtgaggttattgaagaggacgaa 16880982 Query: 494 ttctcgctcgaggagctcatggcggacagctctgcgcccaacgacgagttgtgattct 551 ||||| || |||||||| ||||| |||| |||| | || |||||||||||||||| Sbjct: 16880983 ttctcccttgaggagctgatggccgacaactctccagtaaatgacgagttgtgattct 16881040 Score = 89.7 bits (45), Expect = 1e-14 Identities = 63/69 (91%) Strand = Plus / Plus Query: 5 gctatcgagtccttcgcgttggagcagctggaagcgaacgctgcaccacctgaagtttct 64 |||||||||||||| || ||||||||| ||||||| || ||||| ||||||||||||||| Sbjct: 16879920 gctatcgagtcctttgcattggagcagttggaagccaatgctgctccacctgaagtttct 16879979 Query: 65 gagttgact 73 ||||||||| Sbjct: 16879980 gagttgact 16879988
>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0488D02 Length = 154537 Score = 214 bits (108), Expect = 3e-52 Identities = 132/140 (94%) Strand = Plus / Plus Query: 86 atggaagagaagtgtgcttctgctgccatttgctttgtgtctttccttccagacatcctg 145 ||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||| || Sbjct: 9903 atggaagagaaatgtgcttctgctgccatttgctttgtatctttccttccagatatcttg 9962 Query: 146 gactcaaaggcagaaggaagaaacaagtaccttgagctgctactatctgttgctgagaaa 205 || |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 9963 gattcaaaggccgaaggaagaaacaagtaccttgagctgctattatctgttgctgagaaa 10022 Query: 206 tttaagaagagtccatacag 225 ||||| |||||||||||||| Sbjct: 10023 tttaaaaagagtccatacag 10042 Score = 131 bits (66), Expect = 3e-27 Identities = 111/126 (88%) Strand = Plus / Plus Query: 223 cagttttgtctgggcaggcgccggcaagcaagctgatctggagaagcaggtcggagtcgg 282 ||||||||||||| ||| || || |||||||||||||| |||||||| || ||||| || Sbjct: 10443 cagttttgtctggacagctgctgggaagcaagctgatcttgagaagcaagttggagttgg 10502 Query: 283 tggctatggctatccagccatggtcgctctcaacgtgaagaaaggcgcatacgctccgct 342 ||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||||| || Sbjct: 10503 tggttatggctatccagcgatggttgctctcaacgtgaaaaaaggcgcatatgctccact 10562 Query: 343 ccgtag 348 |||||| Sbjct: 10563 ccgtag 10568 Score = 107 bits (54), Expect = 4e-20 Identities = 147/178 (82%) Strand = Plus / Plus Query: 374 gagtttgtgaaggaggcagggcgcggcggaaagggcaaccttcctctggagggcgccccg 433 |||||||||||||| ||||||||||| || ||||| || |||||| |||| || |||| Sbjct: 10676 gagtttgtgaaggaagcagggcgcggtgggaagggtaatcttcctttggacggtacccca 10735 Query: 434 acggtggtccagtcggaaccatgggacggcaaggatggagaggtcatcgaggaggacgag 493 ||| | ||||| || ||||||||||||||||| ||||| ||||| || || |||||||| Sbjct: 10736 acgatagtccaatctgaaccatgggacggcaaagatggtgaggttattgaagaggacgaa 10795 Query: 494 ttctcgctcgaggagctcatggcggacagctctgcgcccaacgacgagttgtgattct 551 ||||| || |||||||| ||||| |||| |||| | || |||||||||||||||| Sbjct: 10796 ttctcccttgaggagctgatggccgacaactctccagtaaatgacgagttgtgattct 10853 Score = 89.7 bits (45), Expect = 1e-14 Identities = 63/69 (91%) Strand = Plus / Plus Query: 5 gctatcgagtccttcgcgttggagcagctggaagcgaacgctgcaccacctgaagtttct 64 |||||||||||||| || ||||||||| ||||||| || ||||| ||||||||||||||| Sbjct: 9733 gctatcgagtcctttgcattggagcagttggaagccaatgctgctccacctgaagtttct 9792 Query: 65 gagttgact 73 ||||||||| Sbjct: 9793 gagttgact 9801
>dbj|AP005559.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1163_C07 Length = 107121 Score = 214 bits (108), Expect = 3e-52 Identities = 132/140 (94%) Strand = Plus / Plus Query: 86 atggaagagaagtgtgcttctgctgccatttgctttgtgtctttccttccagacatcctg 145 ||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||| || Sbjct: 77781 atggaagagaaatgtgcttctgctgccatttgctttgtatctttccttccagatatcttg 77840 Query: 146 gactcaaaggcagaaggaagaaacaagtaccttgagctgctactatctgttgctgagaaa 205 || |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 77841 gattcaaaggccgaaggaagaaacaagtaccttgagctgctattatctgttgctgagaaa 77900 Query: 206 tttaagaagagtccatacag 225 ||||| |||||||||||||| Sbjct: 77901 tttaaaaagagtccatacag 77920 Score = 131 bits (66), Expect = 3e-27 Identities = 111/126 (88%) Strand = Plus / Plus Query: 223 cagttttgtctgggcaggcgccggcaagcaagctgatctggagaagcaggtcggagtcgg 282 ||||||||||||| ||| || || |||||||||||||| |||||||| || ||||| || Sbjct: 78321 cagttttgtctggacagctgctgggaagcaagctgatcttgagaagcaagttggagttgg 78380 Query: 283 tggctatggctatccagccatggtcgctctcaacgtgaagaaaggcgcatacgctccgct 342 ||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||||| || Sbjct: 78381 tggttatggctatccagcgatggttgctctcaacgtgaaaaaaggcgcatatgctccact 78440 Query: 343 ccgtag 348 |||||| Sbjct: 78441 ccgtag 78446 Score = 107 bits (54), Expect = 4e-20 Identities = 147/178 (82%) Strand = Plus / Plus Query: 374 gagtttgtgaaggaggcagggcgcggcggaaagggcaaccttcctctggagggcgccccg 433 |||||||||||||| ||||||||||| || ||||| || |||||| |||| || |||| Sbjct: 78554 gagtttgtgaaggaagcagggcgcggtgggaagggtaatcttcctttggacggtacccca 78613 Query: 434 acggtggtccagtcggaaccatgggacggcaaggatggagaggtcatcgaggaggacgag 493 ||| | ||||| || ||||||||||||||||| ||||| ||||| || || |||||||| Sbjct: 78614 acgatagtccaatctgaaccatgggacggcaaagatggtgaggttattgaagaggacgaa 78673 Query: 494 ttctcgctcgaggagctcatggcggacagctctgcgcccaacgacgagttgtgattct 551 ||||| || |||||||| ||||| |||| |||| | || |||||||||||||||| Sbjct: 78674 ttctcccttgaggagctgatggccgacaactctccagtaaatgacgagttgtgattct 78731 Score = 89.7 bits (45), Expect = 1e-14 Identities = 63/69 (91%) Strand = Plus / Plus Query: 5 gctatcgagtccttcgcgttggagcagctggaagcgaacgctgcaccacctgaagtttct 64 |||||||||||||| || ||||||||| ||||||| || ||||| ||||||||||||||| Sbjct: 77611 gctatcgagtcctttgcattggagcagttggaagccaatgctgctccacctgaagtttct 77670 Query: 65 gagttgact 73 ||||||||| Sbjct: 77671 gagttgact 77679
>gb|AY112452.1| Zea mays CL286_2 mRNA sequence Length = 1510 Score = 210 bits (106), Expect = 4e-51 Identities = 247/294 (84%) Strand = Plus / Plus Query: 258 atctggagaagcaggtcggagtcggtggctatggctatccagccatggtcgctctcaacg 317 |||| ||||| ||||| || || || ||||| |||||||| |||||||| |||||||||| Sbjct: 1081 atctcgagaaccaggttggtgtgggcggctacggctatcccgccatggtagctctcaacg 1140 Query: 318 tgaagaaaggcgcatacgctccgctccgtagcgccttcgagctcgccgaaatcaccgagt 377 |||||||||| ||||||||||| |||||||| |||||| ||| || |||||||| ||||| Sbjct: 1141 tgaagaaaggtgcatacgctccactccgtagtgccttccagcgcgacgaaatcatcgagt 1200 Query: 378 ttgtgaaggaggcagggcgcggcggaaagggcaaccttcctctggagggcgccccgacgg 437 | ||||||||||||||||| || |||||||| |||||||||||| | | || || || | Sbjct: 1201 tcgtgaaggaggcagggcgtggtggaaagggaaaccttcctctgaacgatgcacctacag 1260 Query: 438 tggtccagtcggaaccatgggacggcaaggatggagaggtcatcgaggaggacgagttct 497 | ||| ||| || || ||||||||||| |||||||||||||| |||||||| || |||| Sbjct: 1261 tagtcgcgtccgagccgtgggacggcaaagatggagaggtcattgaggaggatgaattct 1320 Query: 498 cgctcgaggagctcatggcggacagctctgcgcccaacgacgagttgtgattct 551 | ||||| |||||||||| |||||||| | | ||||| ||||||||||||| Sbjct: 1321 ccctcgacgagctcatgggcgacagctcctcagcaaacgatgagttgtgattct 1374 Score = 117 bits (59), Expect = 4e-23 Identities = 83/91 (91%) Strand = Plus / Plus Query: 54 ctgaagtttctgagttgactagcgcagatgtgatggaagagaagtgtgcttctgctgcca 113 |||||||||||||||||||| || | ||||| |||||||||||||| ||||||||||||| Sbjct: 877 ctgaagtttctgagttgactggcccggatgtcatggaagagaagtgcgcttctgctgcca 936 Query: 114 tttgctttgtgtctttccttccagacatcct 144 |||| ||||| || ||||||||||||||||| Sbjct: 937 tttgttttgtatcattccttccagacatcct 967 Score = 54.0 bits (27), Expect = 5e-04 Identities = 52/62 (83%) Strand = Plus / Plus Query: 174 accttgagctgctactatctgttgctgagaaatttaagaagagtccatacagttttgtct 233 |||||||||| || || ||||| |||||||| ||| |||||||||||||||||||| Sbjct: 997 accttgagctcctgctctctgtagctgagaagtttnnnnngagtccatacagttttgtct 1056 Query: 234 gg 235 || Sbjct: 1057 gg 1058
>emb|AJ719135.1| Nicotiana tabacum cDNA-AFLP-fragment BSTT2-31-530, cultivar Bright Yellow 2 Length = 501 Score = 65.9 bits (33), Expect = 1e-07 Identities = 73/87 (83%) Strand = Plus / Plus Query: 46 tgcaccacctgaagtttctgagttgactagcgcagatgtgatggaagagaagtgtgcttc 105 |||||| |||||||| ||||||||||||| ||||||| |||||| |||| ||| ||| Sbjct: 243 tgcacctcctgaagtgattgagttgactagcccagatgtcatggaanagaaatgtaattc 302 Query: 106 tgctgccatttgctttgtgtctttcct 132 |||||| || |||||||| || ||||| Sbjct: 303 tgctgcnatctgctttgtttcattcct 329
>gb|M99566.1|SYNSCOS sCos cloning vector SfiI containing bacteriophage promoters and flanking restriction sites in sCos vectors Length = 7937 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 tctgctgccatttgctttgtg 124 ||||||||||||||||||||| Sbjct: 1547 tctgctgccatttgctttgtg 1567 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 tctgctgccatttgctttgtg 124 ||||||||||||||||||||| Sbjct: 466 tctgctgccatttgctttgtg 486
>gb|M99569.1|SYNPWE15 sCos cloning vector SfiI containing bacteriophage promoters and flanking restriction sites in sCos vectors Length = 8164 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 tctgctgccatttgctttgtg 124 ||||||||||||||||||||| Sbjct: 1016 tctgctgccatttgctttgtg 1036
>gb|AC025962.5|AC025962 Homo sapiens chromosome 8, clone RP11-790J24, complete sequence Length = 167872 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 91 agagaagtgtgcttctgctgc 111 ||||||||||||||||||||| Sbjct: 21248 agagaagtgtgcttctgctgc 21268
>gb|U00003.1|PIB8 pIB8 cosmid vector; complete sequence Length = 5406 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 tctgctgccatttgctttgtg 124 ||||||||||||||||||||| Sbjct: 4453 tctgctgccatttgctttgtg 4433
>gb|AY532632.1| Cloning vector pLAFR, complete sequence Length = 20352 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 tctgctgccatttgctttgtg 124 ||||||||||||||||||||| Sbjct: 18626 tctgctgccatttgctttgtg 18606
>gb|AE004686.1| Pseudomonas aeruginosa PAO1, section 247 of 529 of the complete genome Length = 10905 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 ggatggagaggtcatcgagga 486 ||||||||||||||||||||| Sbjct: 9016 ggatggagaggtcatcgagga 9036
>gb|AF184978.1|AF184978 Binary vector pCLD04541, complete sequence Length = 27608 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 tctgctgccatttgctttgtg 124 ||||||||||||||||||||| Sbjct: 4607 tctgctgccatttgctttgtg 4587
>emb|Z96759.1|HS8QT041 H.sapiens telomeric DNA sequence, clone 8QTEL041, read 8QTELOO041.seq Length = 342 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 tctgctgccatttgctttgtg 124 ||||||||||||||||||||| Sbjct: 99 tctgctgccatttgctttgtg 79
>gb|L19900.1|SYNSVPHEP Cloning vector cosmid svPHEP DNA sequence encoding beta-lactamase and HSV thymidine kinase genes Length = 9201 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 tctgctgccatttgctttgtg 124 ||||||||||||||||||||| Sbjct: 7131 tctgctgccatttgctttgtg 7111
>gb|L19899.1|SYNCVPTCF Cloning vector cosmid pTCF DNA sequence encoding beta-lactamase gene Length = 7941 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 tctgctgccatttgctttgtg 124 ||||||||||||||||||||| Sbjct: 6488 tctgctgccatttgctttgtg 6508
>gb|AF136442.1|AF136442 Cloning vector pScosBC1, E. coli-Burkholderia shuttle cosmid vector, complete sequence Length = 8772 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 tctgctgccatttgctttgtg 124 ||||||||||||||||||||| Sbjct: 1547 tctgctgccatttgctttgtg 1567 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 tctgctgccatttgctttgtg 124 ||||||||||||||||||||| Sbjct: 466 tctgctgccatttgctttgtg 486
>gb|AF129504.1|AF129504 Cloning vector pWDYcos1.0.1, complete sequence Length = 7478 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 tctgctgccatttgctttgtg 124 ||||||||||||||||||||| Sbjct: 5367 tctgctgccatttgctttgtg 5387 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 tctgctgccatttgctttgtg 124 ||||||||||||||||||||| Sbjct: 4285 tctgctgccatttgctttgtg 4305
>dbj|AB055064.1| Synthetic transposable element dAc-I-RS DNA, complete sequence Length = 7635 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 tctgctgccatttgctttgtg 124 ||||||||||||||||||||| Sbjct: 5322 tctgctgccatttgctttgtg 5342
>emb|Z12112.1|PWE15A pWE15A cosmid vector DNA Length = 8213 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 tctgctgccatttgctttgtg 124 ||||||||||||||||||||| Sbjct: 7195 tctgctgccatttgctttgtg 7175
>emb|X94336.1|CVBETLACT Cloning vector beta-lactamase gene Length = 11142 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 tctgctgccatttgctttgtg 124 ||||||||||||||||||||| Sbjct: 698 tctgctgccatttgctttgtg 678
>emb|X98612.1|CVPJB8 Artificial cloning vector pjb8 Length = 5410 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 tctgctgccatttgctttgtg 124 ||||||||||||||||||||| Sbjct: 958 tctgctgccatttgctttgtg 978
>emb|X65279.1|PWE15 pWE15 cosmid vector DNA Length = 8136 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 tctgctgccatttgctttgtg 124 ||||||||||||||||||||| Sbjct: 7155 tctgctgccatttgctttgtg 7135
>gb|AF075573.1|AF075573 Cloning vector pWEB, complete sequence Length = 8179 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 tctgctgccatttgctttgtg 124 ||||||||||||||||||||| Sbjct: 1033 tctgctgccatttgctttgtg 1053
>gb|L76273.1|SYNHPH Cloning vector pMLF2 hygromycin B phosphotransferase (HPH) gene, complete cds Length = 9184 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 tctgctgccatttgctttgtg 124 ||||||||||||||||||||| Sbjct: 4743 tctgctgccatttgctttgtg 4763
>gb|AC113182.14| Mus musculus chromosome 8, clone RP23-39F24, complete sequence Length = 217373 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 151 aaaggcagaaggaagaaacaa 171 ||||||||||||||||||||| Sbjct: 142611 aaaggcagaaggaagaaacaa 142631
>gb|U07340.1|U07340 Cosmid vector pTL5, complete sequence Length = 5793 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 tctgctgccatttgctttgtg 124 ||||||||||||||||||||| Sbjct: 3281 tctgctgccatttgctttgtg 3261
>dbj|AP003697.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1261H7, complete sequence Length = 170468 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 agagaagtgtgcttctgctgc 111 ||||||||||||||||||||| Sbjct: 149935 agagaagtgtgcttctgctgc 149915
>ref|XM_483499.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1345 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 460 cggcaaggatggagaggtca 479 |||||||||||||||||||| Sbjct: 1031 cggcaaggatggagaggtca 1050
>gb|AC110913.13| Mus musculus chromosome 19, clone RP24-399E19, complete sequence Length = 208309 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 382 gaaggaggcagggcgcggcggaaagggcaacc 413 ||||||||||||| | || ||||||||||||| Sbjct: 76007 gaaggaggcagggagagggggaaagggcaacc 75976
>gb|AC113587.16| Mus musculus chromosome 15, clone RP24-424I13, complete sequence Length = 191054 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 ggctatggctatccagccat 303 |||||||||||||||||||| Sbjct: 58644 ggctatggctatccagccat 58625
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 tcaaaggcagaaggaagaaacaag 172 ||||||||||||| |||||||||| Sbjct: 1938813 tcaaaggcagaagtaagaaacaag 1938790
>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete sequence Length = 1178688 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 agatgtgatggaagagaagt 98 |||||||||||||||||||| Sbjct: 495355 agatgtgatggaagagaagt 495336
>gb|AC139349.4| Mus musculus BAC clone RP24-318A14 from chromosome 8, complete sequence Length = 199464 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 agctgctactatctgttgct 199 |||||||||||||||||||| Sbjct: 191502 agctgctactatctgttgct 191521
>ref|XM_953631.1| Neurospora crassa OR74A hypothetical protein (NCU09658.1) partial mRNA Length = 3048 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 467 gatggagaggtcatcgagga 486 |||||||||||||||||||| Sbjct: 1351 gatggagaggtcatcgagga 1370
>ref|XM_330307.1| Neurospora crassa OR74A hypothetical protein (NCU09658.1) partial mRNA Length = 3048 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 467 gatggagaggtcatcgagga 486 |||||||||||||||||||| Sbjct: 1351 gatggagaggtcatcgagga 1370
>gb|AC119218.7| Mus musculus chromosome 7, clone RP24-200I20, complete sequence Length = 171061 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 atcgaggaggacgagttctc 498 |||||||||||||||||||| Sbjct: 170915 atcgaggaggacgagttctc 170896
>gb|AC147348.2| Xenopus tropicalis clone CH216-122H9, complete sequence Length = 161088 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 gaagtgtgcttctgctgcca 113 |||||||||||||||||||| Sbjct: 38873 gaagtgtgcttctgctgcca 38892
>ref|XM_572822.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNI01780) partial mRNA Length = 1859 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 agatgtgatggaagagaagt 98 |||||||||||||||||||| Sbjct: 1136 agatgtgatggaagagaagt 1117
>emb|AJ224870.1|SCAJ4870 Streptomyces clavuligerus lexA, nrdR & nrdJ genes Length = 5940 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 474 aggtcatcgaggaggacgag 493 |||||||||||||||||||| Sbjct: 5646 aggtcatcgaggaggacgag 5665
>gb|AC162304.4| Mus musculus chromosome 7, clone RP23-350J16, complete sequence Length = 219899 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 atcgaggaggacgagttctc 498 |||||||||||||||||||| Sbjct: 33870 atcgaggaggacgagttctc 33851
>emb|AL035608.11|HS479J7 Human DNA sequence from clone RP3-479J7 on chromosome Xq21.33-23 Contains the gene for tenomodulin protein (TNMD), the TM4SF6 gene for transmembrane 4 superfamily member 6, the 5' end of the gene for sushi-repeat protein (SRPUL) and two CpG islands, complete sequence Length = 97189 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 aggcagaaggaagaaacaag 172 |||||||||||||||||||| Sbjct: 23462 aggcagaaggaagaaacaag 23481
>emb|AL772193.5| Zebrafish DNA sequence from clone CH211-194C5 in linkage group 7 Contains a novel gene similar to PPP1R14B (protein phosphatase 1, regulatory (inhibitor) subunit 14B), a novel gene similar to BRMS1 (breast cancer metastasis-suppressor 1 (BRMS1), the pc gene for pyruvate carboxylase and three putative novel retrotransposons, complete sequence Length = 192531 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 ccgagtttgtgaaggaggca 391 |||||||||||||||||||| Sbjct: 144201 ccgagtttgtgaaggaggca 144220
>gb|AC092124.2| Homo sapiens chromosome 16 clone RP11-1079H2, complete sequence Length = 197992 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 tttgtgtctttccttccaga 138 |||||||||||||||||||| Sbjct: 158510 tttgtgtctttccttccaga 158529
>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence Length = 642517 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 gctgcaccacctgaagtttc 63 |||||||||||||||||||| Sbjct: 141502 gctgcaccacctgaagtttc 141483
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ctgctgccatttgctttgtg 124 |||||||||||||||||||| Sbjct: 2159975 ctgctgccatttgctttgtg 2159956
>gb|AC079789.7| Homo sapiens BAC clone RP11-475B2 from 4, complete sequence Length = 198586 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 tttgctttgtgtctttccttccag 137 |||||||||| ||||||||||||| Sbjct: 156866 tttgctttgtttctttccttccag 156889
>gb|AC093905.3| Homo sapiens BAC clone RP11-739C17 from 4, complete sequence Length = 184862 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 caagcaagctgatctggaga 266 |||||||||||||||||||| Sbjct: 52901 caagcaagctgatctggaga 52882
>gb|AC092810.2| Homo sapiens chromosome 1 clone RP11-385M4, complete sequence Length = 173917 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 tcaaaggcagaaggaagaaa 168 |||||||||||||||||||| Sbjct: 54849 tcaaaggcagaaggaagaaa 54830
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 cggcaaggatggagaggtca 479 |||||||||||||||||||| Sbjct: 26540060 cggcaaggatggagaggtca 26540041
>dbj|AP005529.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0702E04 Length = 190948 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 cggcaaggatggagaggtca 479 |||||||||||||||||||| Sbjct: 88927 cggcaaggatggagaggtca 88908
>emb|BX470085.6| Zebrafish DNA sequence from clone DKEY-238K17 in linkage group 20, complete sequence Length = 107263 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 ccgagtttgtgaaggaggca 391 |||||||||||||||||||| Sbjct: 31217 ccgagtttgtgaaggaggca 31198
>dbj|AK119370.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-H09, full insert sequence Length = 2945 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 cggcaaggatggagaggtca 479 |||||||||||||||||||| Sbjct: 1158 cggcaaggatggagaggtca 1139
>dbj|AK073978.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076N21, full insert sequence Length = 1345 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 460 cggcaaggatggagaggtca 479 |||||||||||||||||||| Sbjct: 1031 cggcaaggatggagaggtca 1050
>tpe|BN000648.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx119 gene for class III peroxidase 119 precursor, exons 1-3 Length = 2477 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 460 cggcaaggatggagaggtca 479 |||||||||||||||||||| Sbjct: 2429 cggcaaggatggagaggtca 2448
>gb|AC123724.9| Mus musculus chromosome 15, clone RP23-432N1, complete sequence Length = 200503 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 ggctatggctatccagccat 303 |||||||||||||||||||| Sbjct: 182801 ggctatggctatccagccat 182782
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29 Length = 303450 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 424 gggcgccccgacggtggtcc 443 |||||||||||||||||||| Sbjct: 157646 gggcgccccgacggtggtcc 157627
>gb|AC132382.3| Mus musculus BAC clone RP23-425E9 from 8, complete sequence Length = 218283 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 agctgctactatctgttgct 199 |||||||||||||||||||| Sbjct: 26308 agctgctactatctgttgct 26327
>emb|AL592224.17| Mouse DNA sequence from clone RP23-174G1 on chromosome 1, complete sequence Length = 217775 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 agaagagtccatacagtttt 229 |||||||||||||||||||| Sbjct: 147055 agaagagtccatacagtttt 147074 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,253,752 Number of Sequences: 3902068 Number of extensions: 5253752 Number of successful extensions: 98623 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98376 Number of HSP's gapped (non-prelim): 239 length of query: 607 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 584 effective length of database: 17,143,297,704 effective search space: 10011685859136 effective search space used: 10011685859136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)