| Clone Name | bags17l23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_196485.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0045B21.18), mRNA Length = 1113 Score = 432 bits (218), Expect = e-118 Identities = 398/458 (86%) Strand = Plus / Plus Query: 154 gcctcggaaacgactttggaatcagggttgtatctagtggcgacacccattgggaacctc 213 ||||||||| || |||||| || ||| ||||||| ||||| || || || ||||||||| Sbjct: 154 gcctcggaaccggatttggattccgggctgtatcttgtggcaacgccaatcgggaacctc 213 Query: 214 gaggatatcaccttgagggcattgcgtgttctgaaatgtgcttgtgtgatactctctgaa 273 |||||||||||||| |||||||||||| | || ||||||||| ||| ||||| || ||| Sbjct: 214 gaggatatcaccttaagggcattgcgtatcctcaaatgtgctgatgtcatactatcagaa 273 Query: 274 gacacaaggcattctggaaagttacttcagcattacaacatcaagacacctcttctcagc 333 ||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| Sbjct: 274 gacacaaggcattctggaaagctacttcaacattataacatcaagacacctcttctcagc 333 Query: 334 ttccataagttcaatgagcgcgagagagagcccattatcttaaagaggctccatgaaggg 393 || |||||||| |||||||| || |||||||| | |||||||||||| || ||||||||| Sbjct: 334 tttcataagtttaatgagcgtgaaagagagcctaatatcttaaagagacttcatgaaggg 393 Query: 394 gaagcaattgcagtgattagtgatgctggcactccaggcatcagtgaccctggcatggag 453 |||||| ||||| |||||||||||||||| ||||| || || ||||| ||||||||||| Sbjct: 394 gaagcagttgcattgattagtgatgctggtactcctggaattagtgatcctggcatggaa 453 Query: 454 ctggctagactatgcatgactgaaaaaattcctgttattcccattcctgggccttctgcc 513 |||||||||||||| ||||| ||| |||||||| |||||||||||||| ||||| Sbjct: 454 ctggctagactatgtgctactgagggaatccctgttatccccattcctgggccgtctgct 513 Query: 514 gcaattgccgctctttctgcatcgggtttgccaaccgaggaattcacatttgtgggtttt 573 ||||| || |||||||||||||| ||||||||||| || ||||| ||||||||||| ||| Sbjct: 514 gcaatagctgctctttctgcatctggtttgccaactgatgaatttacatttgtggggttt 573 Query: 574 ttaccaaagcatggtcgatcaagaaaagctaggcttga 611 ||||||||||||| |||||||||||||| |||||||| Sbjct: 574 ttaccaaagcatgctcgatcaagaaaagaaaggcttga 611 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 1 atggcgtctctgctccgcctccaggccctc 30 |||||||| ||||||||||||||||||||| Sbjct: 1 atggcgtcgctgctccgcctccaggccctc 30
>dbj|AK067754.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114M12, full insert sequence Length = 1599 Score = 432 bits (218), Expect = e-118 Identities = 398/458 (86%) Strand = Plus / Plus Query: 154 gcctcggaaacgactttggaatcagggttgtatctagtggcgacacccattgggaacctc 213 ||||||||| || |||||| || ||| ||||||| ||||| || || || ||||||||| Sbjct: 217 gcctcggaaccggatttggattccgggctgtatcttgtggcaacgccaatcgggaacctc 276 Query: 214 gaggatatcaccttgagggcattgcgtgttctgaaatgtgcttgtgtgatactctctgaa 273 |||||||||||||| |||||||||||| | || ||||||||| ||| ||||| || ||| Sbjct: 277 gaggatatcaccttaagggcattgcgtatcctcaaatgtgctgatgtcatactatcagaa 336 Query: 274 gacacaaggcattctggaaagttacttcagcattacaacatcaagacacctcttctcagc 333 ||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| Sbjct: 337 gacacaaggcattctggaaagctacttcaacattataacatcaagacacctcttctcagc 396 Query: 334 ttccataagttcaatgagcgcgagagagagcccattatcttaaagaggctccatgaaggg 393 || |||||||| |||||||| || |||||||| | |||||||||||| || ||||||||| Sbjct: 397 tttcataagtttaatgagcgtgaaagagagcctaatatcttaaagagacttcatgaaggg 456 Query: 394 gaagcaattgcagtgattagtgatgctggcactccaggcatcagtgaccctggcatggag 453 |||||| ||||| |||||||||||||||| ||||| || || ||||| ||||||||||| Sbjct: 457 gaagcagttgcattgattagtgatgctggtactcctggaattagtgatcctggcatggaa 516 Query: 454 ctggctagactatgcatgactgaaaaaattcctgttattcccattcctgggccttctgcc 513 |||||||||||||| ||||| ||| |||||||| |||||||||||||| ||||| Sbjct: 517 ctggctagactatgtgctactgagggaatccctgttatccccattcctgggccgtctgct 576 Query: 514 gcaattgccgctctttctgcatcgggtttgccaaccgaggaattcacatttgtgggtttt 573 ||||| || |||||||||||||| ||||||||||| || ||||| ||||||||||| ||| Sbjct: 577 gcaatagctgctctttctgcatctggtttgccaactgatgaatttacatttgtggggttt 636 Query: 574 ttaccaaagcatggtcgatcaagaaaagctaggcttga 611 ||||||||||||| |||||||||||||| |||||||| Sbjct: 637 ttaccaaagcatgctcgatcaagaaaagaaaggcttga 674 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 1 atggcgtctctgctccgcctccaggccctc 30 |||||||| ||||||||||||||||||||| Sbjct: 64 atggcgtcgctgctccgcctccaggccctc 93
>gb|AY664417.1| Zea mays cultivar Mo17 locus 9002, complete sequence Length = 366120 Score = 135 bits (68), Expect = 2e-28 Identities = 95/104 (91%) Strand = Plus / Minus Query: 224 ccttgagggcattgcgtgttctgaaatgtgcttgtgtgatactctctgaagacacaaggc 283 |||| |||||| ||||||| || ||||||||| ||||||||| |||||||||||||||| Sbjct: 225582 ccttcagggcactgcgtgtcctaaaatgtgctaatgtgatactatctgaagacacaaggc 225523 Query: 284 attctggaaagttacttcagcattacaacatcaagacacctctt 327 |||| |||||| |||||||||||||||||||||||||||||||| Sbjct: 225522 attcaggaaagctacttcagcattacaacatcaagacacctctt 225479 Score = 133 bits (67), Expect = 8e-28 Identities = 112/127 (88%) Strand = Plus / Minus Query: 331 agcttccataagttcaatgagcgcgagagagagcccattatcttaaagaggctccatgaa 390 ||||||||||||||||| || || ||||||||||||| |||||||| |||||| |||||| Sbjct: 225400 agcttccataagttcaacgaacgggagagagagcccactatcttaaggaggcttcatgaa 225341 Query: 391 ggggaagcaattgcagtgattagtgatgctggcactccaggcatcagtgaccctggcatg 450 || |||||| ||||| |||| ||||||||||| || ||||| || ||||||||||||||| Sbjct: 225340 ggtgaagcagttgcactgataagtgatgctgggacgccaggtattagtgaccctggcatg 225281 Query: 451 gagctgg 457 || |||| Sbjct: 225280 gaactgg 225274 Score = 107 bits (54), Expect = 4e-20 Identities = 84/94 (89%) Strand = Plus / Minus Query: 472 actgaaaaaattcctgttattcccattcctgggccttctgccgcaattgccgctctttct 531 ||||| ||||| ||||| ||||||||||||||||| ||||| |||||||| ||||||||| Sbjct: 225065 actgagaaaatccctgtcattcccattcctgggccatctgctgcaattgctgctctttct 225006 Query: 532 gcatcgggtttgccaaccgaggaattcacatttg 565 ||||||||||||||| | | ||||||||||||| Sbjct: 225005 gcatcgggtttgccatcaaatgaattcacatttg 224972 Score = 63.9 bits (32), Expect = 6e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 568 ggttttttaccaaagcatggtcgatcaagaaaagctaggcttgaggtatctg 619 ||||||||||||||||||| ||| ||||||| || |||||||||| |||||| Sbjct: 224889 ggttttttaccaaagcatgctcggtcaagaagagataggcttgagatatctg 224838
>gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence Length = 317137 Score = 135 bits (68), Expect = 2e-28 Identities = 95/104 (91%) Strand = Plus / Minus Query: 224 ccttgagggcattgcgtgttctgaaatgtgcttgtgtgatactctctgaagacacaaggc 283 |||| |||||| ||||||| || ||||||||| ||||||||| |||||||||||||||| Sbjct: 177847 ccttcagggcactgcgtgtcctaaaatgtgctaatgtgatactatctgaagacacaaggc 177788 Query: 284 attctggaaagttacttcagcattacaacatcaagacacctctt 327 |||| |||||| |||||||||||||||||||||||||||||||| Sbjct: 177787 attcaggaaagctacttcagcattacaacatcaagacacctctt 177744 Score = 133 bits (67), Expect = 8e-28 Identities = 112/127 (88%) Strand = Plus / Minus Query: 331 agcttccataagttcaatgagcgcgagagagagcccattatcttaaagaggctccatgaa 390 ||||||||||||||||| || || ||||||||||||| |||||||| |||||| |||||| Sbjct: 177665 agcttccataagttcaacgaacgggagagagagcccactatcttaaggaggcttcatgaa 177606 Query: 391 ggggaagcaattgcagtgattagtgatgctggcactccaggcatcagtgaccctggcatg 450 || |||||| ||||| |||| ||||||||||| || ||||| || ||||||||||||||| Sbjct: 177605 ggtgaagcagttgcactgataagtgatgctgggacgccaggtattagtgaccctggcatg 177546 Query: 451 gagctgg 457 || |||| Sbjct: 177545 gaactgg 177539 Score = 107 bits (54), Expect = 4e-20 Identities = 84/94 (89%) Strand = Plus / Minus Query: 472 actgaaaaaattcctgttattcccattcctgggccttctgccgcaattgccgctctttct 531 ||||| ||||| ||||| ||||||||||||||||| ||||| |||||||| ||||||||| Sbjct: 177277 actgagaaaatccctgtcattcccattcctgggccatctgctgcaattgctgctctttct 177218 Query: 532 gcatcgggtttgccaaccgaggaattcacatttg 565 ||||||||||||||| | | ||||||||||||| Sbjct: 177217 gcatcgggtttgccatcaaatgaattcacatttg 177184 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 571 tttttaccaaagcatggtcgatcaagaaaagctaggcttgaggtatctg 619 |||||||||||||||| ||| ||||||| || |||||||||| |||||| Sbjct: 177098 tttttaccaaagcatgctcggtcaagaagagataggcttgagatatctg 177050
>gb|AC027660.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone BAC nbxb0045B21, complete sequence Length = 152397 Score = 131 bits (66), Expect = 3e-27 Identities = 114/130 (87%) Strand = Plus / Minus Query: 328 ctcagcttccataagttcaatgagcgcgagagagagcccattatcttaaagaggctccat 387 |||||||| |||||||| |||||||| || |||||||| | |||||||||||| || ||| Sbjct: 130448 ctcagctttcataagtttaatgagcgtgaaagagagcctaatatcttaaagagacttcat 130389 Query: 388 gaaggggaagcaattgcagtgattagtgatgctggcactccaggcatcagtgaccctggc 447 |||||||||||| ||||| |||||||||||||||| ||||| || || ||||| |||||| Sbjct: 130388 gaaggggaagcagttgcattgattagtgatgctggtactcctggaattagtgatcctggc 130329 Query: 448 atggagctgg 457 ||||| |||| Sbjct: 130328 atggaactgg 130319 Score = 109 bits (55), Expect = 1e-20 Identities = 88/99 (88%) Strand = Plus / Minus Query: 229 agggcattgcgtgttctgaaatgtgcttgtgtgatactctctgaagacacaaggcattct 288 |||||||||||| | || ||||||||| ||| ||||| || |||||||||||||||||| Sbjct: 130659 agggcattgcgtatcctcaaatgtgctgatgtcatactatcagaagacacaaggcattct 130600 Query: 289 ggaaagttacttcagcattacaacatcaagacacctctt 327 |||||| ||||||| ||||| |||||||||||||||||| Sbjct: 130599 ggaaagctacttcaacattataacatcaagacacctctt 130561 Score = 91.7 bits (46), Expect = 3e-15 Identities = 73/82 (89%) Strand = Plus / Minus Query: 484 cctgttattcccattcctgggccttctgccgcaattgccgctctttctgcatcgggtttg 543 |||||||| |||||||||||||| ||||| ||||| || |||||||||||||| |||||| Sbjct: 130012 cctgttatccccattcctgggccgtctgctgcaatagctgctctttctgcatctggtttg 129953 Query: 544 ccaaccgaggaattcacatttg 565 ||||| || ||||| ||||||| Sbjct: 129952 ccaactgatgaatttacatttg 129931 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 565 gtgggttttttaccaaagcatggtcgatcaagaaaagctaggcttga 611 ||||| |||||||||||||||| |||||||||||||| |||||||| Sbjct: 129852 gtggggtttttaccaaagcatgctcgatcaagaaaagaaaggcttga 129806 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 168 tttggaatcagggttgtatctagtggcgacacccattgggaacctcgaggatatcacctt 227 |||||| || ||| ||||||| ||||| || || || ||||||||||||||||||||||| Sbjct: 131327 tttggattccgggctgtatcttgtggcaacgccaatcgggaacctcgaggatatcacctt 131268 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 1 atggcgtctctgctccgcctccaggccctc 30 |||||||| ||||||||||||||||||||| Sbjct: 132065 atggcgtcgctgctccgcctccaggccctc 132036
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 131 bits (66), Expect = 3e-27 Identities = 114/130 (87%) Strand = Plus / Minus Query: 328 ctcagcttccataagttcaatgagcgcgagagagagcccattatcttaaagaggctccat 387 |||||||| |||||||| |||||||| || |||||||| | |||||||||||| || ||| Sbjct: 13961822 ctcagctttcataagtttaatgagcgtgaaagagagcctaatatcttaaagagacttcat 13961763 Query: 388 gaaggggaagcaattgcagtgattagtgatgctggcactccaggcatcagtgaccctggc 447 |||||||||||| ||||| |||||||||||||||| ||||| || || ||||| |||||| Sbjct: 13961762 gaaggggaagcagttgcattgattagtgatgctggtactcctggaattagtgatcctggc 13961703 Query: 448 atggagctgg 457 ||||| |||| Sbjct: 13961702 atggaactgg 13961693 Score = 109 bits (55), Expect = 1e-20 Identities = 88/99 (88%) Strand = Plus / Minus Query: 229 agggcattgcgtgttctgaaatgtgcttgtgtgatactctctgaagacacaaggcattct 288 |||||||||||| | || ||||||||| ||| ||||| || |||||||||||||||||| Sbjct: 13962033 agggcattgcgtatcctcaaatgtgctgatgtcatactatcagaagacacaaggcattct 13961974 Query: 289 ggaaagttacttcagcattacaacatcaagacacctctt 327 |||||| ||||||| ||||| |||||||||||||||||| Sbjct: 13961973 ggaaagctacttcaacattataacatcaagacacctctt 13961935 Score = 91.7 bits (46), Expect = 3e-15 Identities = 73/82 (89%) Strand = Plus / Minus Query: 484 cctgttattcccattcctgggccttctgccgcaattgccgctctttctgcatcgggtttg 543 |||||||| |||||||||||||| ||||| ||||| || |||||||||||||| |||||| Sbjct: 13961386 cctgttatccccattcctgggccgtctgctgcaatagctgctctttctgcatctggtttg 13961327 Query: 544 ccaaccgaggaattcacatttg 565 ||||| || ||||| ||||||| Sbjct: 13961326 ccaactgatgaatttacatttg 13961305 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 565 gtgggttttttaccaaagcatggtcgatcaagaaaagctaggcttga 611 ||||| |||||||||||||||| |||||||||||||| |||||||| Sbjct: 13961226 gtggggtttttaccaaagcatgctcgatcaagaaaagaaaggcttga 13961180 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 168 tttggaatcagggttgtatctagtggcgacacccattgggaacctcgaggatatcacctt 227 |||||| || ||| ||||||| ||||| || || || ||||||||||||||||||||||| Sbjct: 13962701 tttggattccgggctgtatcttgtggcaacgccaatcgggaacctcgaggatatcacctt 13962642 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 1 atggcgtctctgctccgcctccaggccctc 30 |||||||| ||||||||||||||||||||| Sbjct: 13963439 atggcgtcgctgctccgcctccaggccctc 13963410
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 131 bits (66), Expect = 3e-27 Identities = 114/130 (87%) Strand = Plus / Minus Query: 328 ctcagcttccataagttcaatgagcgcgagagagagcccattatcttaaagaggctccat 387 |||||||| |||||||| |||||||| || |||||||| | |||||||||||| || ||| Sbjct: 13969164 ctcagctttcataagtttaatgagcgtgaaagagagcctaatatcttaaagagacttcat 13969105 Query: 388 gaaggggaagcaattgcagtgattagtgatgctggcactccaggcatcagtgaccctggc 447 |||||||||||| ||||| |||||||||||||||| ||||| || || ||||| |||||| Sbjct: 13969104 gaaggggaagcagttgcattgattagtgatgctggtactcctggaattagtgatcctggc 13969045 Query: 448 atggagctgg 457 ||||| |||| Sbjct: 13969044 atggaactgg 13969035 Score = 109 bits (55), Expect = 1e-20 Identities = 88/99 (88%) Strand = Plus / Minus Query: 229 agggcattgcgtgttctgaaatgtgcttgtgtgatactctctgaagacacaaggcattct 288 |||||||||||| | || ||||||||| ||| ||||| || |||||||||||||||||| Sbjct: 13969375 agggcattgcgtatcctcaaatgtgctgatgtcatactatcagaagacacaaggcattct 13969316 Query: 289 ggaaagttacttcagcattacaacatcaagacacctctt 327 |||||| ||||||| ||||| |||||||||||||||||| Sbjct: 13969315 ggaaagctacttcaacattataacatcaagacacctctt 13969277 Score = 91.7 bits (46), Expect = 3e-15 Identities = 73/82 (89%) Strand = Plus / Minus Query: 484 cctgttattcccattcctgggccttctgccgcaattgccgctctttctgcatcgggtttg 543 |||||||| |||||||||||||| ||||| ||||| || |||||||||||||| |||||| Sbjct: 13968728 cctgttatccccattcctgggccgtctgctgcaatagctgctctttctgcatctggtttg 13968669 Query: 544 ccaaccgaggaattcacatttg 565 ||||| || ||||| ||||||| Sbjct: 13968668 ccaactgatgaatttacatttg 13968647 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 565 gtgggttttttaccaaagcatggtcgatcaagaaaagctaggcttga 611 ||||| |||||||||||||||| |||||||||||||| |||||||| Sbjct: 13968568 gtggggtttttaccaaagcatgctcgatcaagaaaagaaaggcttga 13968522 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 168 tttggaatcagggttgtatctagtggcgacacccattgggaacctcgaggatatcacctt 227 |||||| || ||| ||||||| ||||| || || || ||||||||||||||||||||||| Sbjct: 13970043 tttggattccgggctgtatcttgtggcaacgccaatcgggaacctcgaggatatcacctt 13969984 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 1 atggcgtctctgctccgcctccaggccctc 30 |||||||| ||||||||||||||||||||| Sbjct: 13970781 atggcgtcgctgctccgcctccaggccctc 13970752
>gb|BC099942.1| Mus musculus solute carrier family 9 (sodium/hydrogen exchanger), isoform 9, mRNA (cDNA clone MGC:107413 IMAGE:30103308), complete cds Length = 3539 Score = 48.1 bits (24), Expect = 0.035 Identities = 27/28 (96%) Strand = Plus / Minus Query: 591 atcaagaaaagctaggcttgaggtatct 618 ||||||| |||||||||||||||||||| Sbjct: 3132 atcaagagaagctaggcttgaggtatct 3105
>dbj|AK156494.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830027D23 product:solute carrier family 9 (sodium/hydrogen exchanger), isoform 9, full insert sequence Length = 3447 Score = 48.1 bits (24), Expect = 0.035 Identities = 27/28 (96%) Strand = Plus / Minus Query: 591 atcaagaaaagctaggcttgaggtatct 618 ||||||| |||||||||||||||||||| Sbjct: 3122 atcaagagaagctaggcttgaggtatct 3095
>gb|AC157517.2| Mus musculus BAC clone RP24-69C11 from chromosome 9, complete sequence Length = 189253 Score = 48.1 bits (24), Expect = 0.035 Identities = 27/28 (96%) Strand = Plus / Plus Query: 591 atcaagaaaagctaggcttgaggtatct 618 ||||||| |||||||||||||||||||| Sbjct: 59279 atcaagagaagctaggcttgaggtatct 59306
>ref|NM_177909.3| Mus musculus solute carrier family 9 (sodium/hydrogen exchanger), isoform 9 (Slc9a9), mRNA Length = 3539 Score = 48.1 bits (24), Expect = 0.035 Identities = 27/28 (96%) Strand = Plus / Minus Query: 591 atcaagaaaagctaggcttgaggtatct 618 ||||||| |||||||||||||||||||| Sbjct: 3132 atcaagagaagctaggcttgaggtatct 3105
>ref|NM_103586.3| Arabidopsis thaliana methyltransferase AT1G45110 mRNA, complete cds Length = 1316 Score = 44.1 bits (22), Expect = 0.55 Identities = 46/54 (85%) Strand = Plus / Plus Query: 258 tgtgatactctctgaagacacaaggcattctggaaagttacttcagcattacaa 311 ||||||||||||||| || ||||| || ||||| ||||| || ||| ||||||| Sbjct: 284 tgtgatactctctgaggatacaagacactctgggaagttgctacagtattacaa 337
>gb|BT010558.1| Arabidopsis thaliana At1g45110 gene, complete cds Length = 1032 Score = 44.1 bits (22), Expect = 0.55 Identities = 46/54 (85%) Strand = Plus / Plus Query: 258 tgtgatactctctgaagacacaaggcattctggaaagttacttcagcattacaa 311 ||||||||||||||| || ||||| || ||||| ||||| || ||| ||||||| Sbjct: 246 tgtgatactctctgaggatacaagacactctgggaagttgctacagtattacaa 299
>emb|BX814552.1|CNS0AC8P Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB7ZG01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1283 Score = 44.1 bits (22), Expect = 0.55 Identities = 46/54 (85%) Strand = Plus / Plus Query: 258 tgtgatactctctgaagacacaaggcattctggaaagttacttcagcattacaa 311 ||||||||||||||| || ||||| || ||||| ||||| || ||| ||||||| Sbjct: 251 tgtgatactctctgaggatacaagacactctgggaagttgctacagtattacaa 304
>gb|AC007915.3|AC007915 Genomic sequence for Arabidopsis thaliana BAC F27F5 from chromosome I, complete sequence Length = 137336 Score = 44.1 bits (22), Expect = 0.55 Identities = 46/54 (85%) Strand = Plus / Plus Query: 258 tgtgatactctctgaagacacaaggcattctggaaagttacttcagcattacaa 311 ||||||||||||||| || ||||| || ||||| ||||| || ||| ||||||| Sbjct: 78928 tgtgatactctctgaggatacaagacactctgggaagttgctacagtattacaa 78981
>gb|AY692264.1| Bacteriophage T5 strain st0 deletion mutant, complete genome Length = 113238 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 agcaattgcagtgattagtg 415 |||||||||||||||||||| Sbjct: 102743 agcaattgcagtgattagtg 102724
>gb|AY543070.1| Bacteriophage T5, complete genome Length = 121750 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 agcaattgcagtgattagtg 415 |||||||||||||||||||| Sbjct: 110785 agcaattgcagtgattagtg 110766
>gb|AC185539.1| Drosophila melanogaster clone BACR22O16, complete sequence Length = 180099 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 497 ttcctgggccttctgccgca 516 |||||||||||||||||||| Sbjct: 118150 ttcctgggccttctgccgca 118169
>gb|AC185536.1| Drosophila melanogaster clone BACR38K14, complete sequence Length = 185823 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 497 ttcctgggccttctgccgca 516 |||||||||||||||||||| Sbjct: 41906 ttcctgggccttctgccgca 41925
>gb|AC122923.4| Mus musculus BAC clone RP23-36G5 from 10, complete sequence Length = 242112 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 acacctcttctcagcttcca 338 |||||||||||||||||||| Sbjct: 217606 acacctcttctcagcttcca 217625
>gb|AC092848.3| Homo sapiens BAC clone RP11-689A23 from 7, complete sequence Length = 66776 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 ctcttctcccttacgctggccact 51 |||| ||||||||||||||||||| Sbjct: 54538 ctctgctcccttacgctggccact 54561
>gb|AC142307.1| Pan troglodytes BAC clone RP43-131H12 from 7, complete sequence Length = 158646 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 ctcttctcccttacgctggccact 51 |||| ||||||||||||||||||| Sbjct: 61372 ctctgctcccttacgctggccact 61349
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 603 taggcttgaggtatctggct 622 |||||||||||||||||||| Sbjct: 2072114 taggcttgaggtatctggct 2072095
>emb|AL591435.10| Human DNA sequence from clone RP11-712I22 on chromosome X, complete sequence Length = 138038 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 581 agcatggtcgatcaagaaaa 600 |||||||||||||||||||| Sbjct: 60654 agcatggtcgatcaagaaaa 60673
>emb|AL445649.15| Human DNA sequence from clone RP11-381O6 on chromosome 13, complete sequence Length = 190126 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 ttctcagcttccataagttc 345 |||||||||||||||||||| Sbjct: 154058 ttctcagcttccataagttc 154039
>emb|AL121929.17|HSBA416N2 Human DNA sequence from clone RP11-416N2 on chromosome 10 Contains the 3' end of the NEURL gene for neuralized-like (Drosophila), the 3' end of the SH3MD1 gene for SH3 multiple domains 1 and seven CpG islands, complete sequence Length = 203262 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 gtctctgctccgcctccagg 25 |||||||||||||||||||| Sbjct: 194625 gtctctgctccgcctccagg 194606
>gb|AC158946.4| Mus musculus chromosome 1, clone RP24-267F8, complete sequence Length = 137800 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 tctcccttacgctggccact 51 |||||||||||||||||||| Sbjct: 14893 tctcccttacgctggccact 14912
>emb|AL031296.1|HS888M10 Human DNA sequence from clone RP5-888M10 on chromosome 1p36.11-36.31 Contains the 3' end of the VPS13D gene for vacuolar protein sorting 13D (yeast) and a novel gene, complete sequence Length = 124874 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 ccaggccctcttctccctta 40 |||||||||||||||||||| Sbjct: 91816 ccaggccctcttctccctta 91797
>gb|AC026495.13| Homo sapiens chromosome 15, clone RP11-509A17, complete sequence Length = 188605 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 ctccaggccctcttctccct 38 |||||||||||||||||||| Sbjct: 182181 ctccaggccctcttctccct 182162
>gb|AC091565.10| Homo sapiens chromosome 15, clone RP11-228M15, complete sequence Length = 180741 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 ctccaggccctcttctccct 38 |||||||||||||||||||| Sbjct: 155813 ctccaggccctcttctccct 155794
>gb|AC025138.14| Homo sapiens chromosome 15, clone RP11-291O21, complete sequence Length = 173173 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 ctccaggccctcttctccct 38 |||||||||||||||||||| Sbjct: 79634 ctccaggccctcttctccct 79615
>dbj|AK075224.1| Homo sapiens cDNA FLJ90743 fis, clone PLACE1011236, weakly similar to Mus musculus mRNA for RST Length = 1871 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 tccgcctccaggccctcttc 33 |||||||||||||||||||| Sbjct: 869 tccgcctccaggccctcttc 888
>ref|NM_167760.1| Drosophila melanogaster CG14476-RE, transcript variant E (CG14476), mRNA Length = 3264 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 ttcctgggccttctgccgca 516 |||||||||||||||||||| Sbjct: 765 ttcctgggccttctgccgca 746
>ref|NM_167759.1| Drosophila melanogaster CG14476-RD, transcript variant D (CG14476), mRNA Length = 3138 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 ttcctgggccttctgccgca 516 |||||||||||||||||||| Sbjct: 639 ttcctgggccttctgccgca 620
>ref|NM_167758.1| Drosophila melanogaster CG14476-RC, transcript variant C (CG14476), mRNA Length = 3089 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 ttcctgggccttctgccgca 516 |||||||||||||||||||| Sbjct: 590 ttcctgggccttctgccgca 571
>ref|NM_167757.1| Drosophila melanogaster CG14476-RA, transcript variant A (CG14476), mRNA Length = 3144 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 ttcctgggccttctgccgca 516 |||||||||||||||||||| Sbjct: 647 ttcctgggccttctgccgca 628
>ref|NM_143888.4| Drosophila melanogaster CG14476-RB, transcript variant B (CG14476), mRNA Length = 3135 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 ttcctgggccttctgccgca 516 |||||||||||||||||||| Sbjct: 636 ttcctgggccttctgccgca 617
>gb|AC010626.6| Homo sapiens chromosome 5 clone CTD-2138K21, complete sequence Length = 160312 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 gcctccaggccctcttctcc 36 |||||||||||||||||||| Sbjct: 49745 gcctccaggccctcttctcc 49726
>gb|AC091990.2| Homo sapiens chromosome 5 clone RP11-82D20, complete sequence Length = 177470 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 gcctccaggccctcttctcc 36 |||||||||||||||||||| Sbjct: 3438 gcctccaggccctcttctcc 3457
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 cccattcctgggccttctgc 512 |||||||||||||||||||| Sbjct: 2734199 cccattcctgggccttctgc 2734218
>gb|AC135348.5| Homo sapiens chromosome 17, clone RP13-822L18, complete sequence Length = 111302 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 ctccaggccctcttctccct 38 |||||||||||||||||||| Sbjct: 33656 ctccaggccctcttctccct 33637
>gb|AY954234.1| Ranunculus lapponicus voucher J.T. Johansson s.n. trnK gene, intron; and maturase K (matK) gene, complete cds; chloroplast Length = 1817 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 585 tggtcgatcaagaaaagcta 604 |||||||||||||||||||| Sbjct: 769 tggtcgatcaagaaaagcta 750
>gb|AC109597.3| Homo sapiens chromosome 16 clone CTD-2583P5, complete sequence Length = 169587 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 gcctccaggccctcttctcc 36 |||||||||||||||||||| Sbjct: 33374 gcctccaggccctcttctcc 33355
>gb|AC092324.3| Homo sapiens chromosome 16 clone RP11-14K2, complete sequence Length = 160410 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 gcctccaggccctcttctcc 36 |||||||||||||||||||| Sbjct: 127717 gcctccaggccctcttctcc 127698
>gb|AC138748.4| Homo sapiens chromosome 15, clone RP11-382A4, complete sequence Length = 71640 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 ctccaggccctcttctccct 38 |||||||||||||||||||| Sbjct: 44714 ctccaggccctcttctccct 44733
>gb|AC137568.8| Homo sapiens chromosome 15, clone RP11-1217C12, complete sequence Length = 199045 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 ctccaggccctcttctccct 38 |||||||||||||||||||| Sbjct: 144090 ctccaggccctcttctccct 144071
>gb|AC136687.6| Homo sapiens chromosome 15, clone RP11-439M15, complete sequence Length = 180708 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 ctccaggccctcttctccct 38 |||||||||||||||||||| Sbjct: 189 ctccaggccctcttctccct 170
>emb|BX004973.10| Mouse DNA sequence from clone RP24-260G16 on chromosome 2, complete sequence Length = 114815 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 428 caggcatcagtgaccctggcatggagct 455 |||||||| ||||||| ||||||||||| Sbjct: 67875 caggcatctgtgacccaggcatggagct 67902
>emb|AL845260.15| Mouse DNA sequence from clone RP23-232J15 on chromosome 2, complete sequence Length = 217328 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 ctctctgaagacacaaggca 284 |||||||||||||||||||| Sbjct: 156425 ctctctgaagacacaaggca 156406
>emb|AL929217.14| Zebrafish DNA sequence from clone CH211-148A2, complete sequence Length = 130060 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 ctgtctcccatcccatctcc 76 |||||||||||||||||||| Sbjct: 102913 ctgtctcccatcccatctcc 102932
>gb|AY587007.1| Bacteriophage T5 strain ATCC 11303-B5, complete genome Length = 121752 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 agcaattgcagtgattagtg 415 |||||||||||||||||||| Sbjct: 110867 agcaattgcagtgattagtg 110848
>gb|AF145625.1|AF145625 Drosophila melanogaster clone GH04962 BcDNA.GH04962 (BcDNA.GH04962) mRNA, complete cds Length = 3174 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 ttcctgggccttctgccgca 516 |||||||||||||||||||| Sbjct: 655 ttcctgggccttctgccgca 636
>gb|AE003122.5| Drosophila melanogaster chromosome X, section 72 of 74 of the complete sequence Length = 306367 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 497 ttcctgggccttctgccgca 516 |||||||||||||||||||| Sbjct: 82355 ttcctgggccttctgccgca 82374
>emb|AL356032.4|CNS05TDD Human chromosome 14 DNA sequence BAC R-802A16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 169936 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 gttcaatgagcgcgagagag 361 |||||||||||||||||||| Sbjct: 169748 gttcaatgagcgcgagagag 169729
>emb|X75922.1|BT5LLP Bacteriophage T5 llp, oad, dmp genes Length = 1622 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 agcaattgcagtgattagtg 415 |||||||||||||||||||| Sbjct: 498 agcaattgcagtgattagtg 479
>gb|AC132435.3| Mus musculus BAC clone RP23-223L12 from 10, complete sequence Length = 198383 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 acacctcttctcagcttcca 338 |||||||||||||||||||| Sbjct: 38216 acacctcttctcagcttcca 38235
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 9 tctgctccgcctccaggccctctt 32 |||||||| ||||||||||||||| Sbjct: 789901 tctgctccccctccaggccctctt 789924
>emb|AL935045.6| Zebrafish DNA sequence from clone CH211-183M1, complete sequence Length = 149814 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 ctgtctcccatcccatctcc 76 |||||||||||||||||||| Sbjct: 94141 ctgtctcccatcccatctcc 94160
>emb|AL355887.4|CNS05TCY Human chromosome 14 DNA sequence BAC R-179O11 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 159183 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 gttcaatgagcgcgagagag 361 |||||||||||||||||||| Sbjct: 74725 gttcaatgagcgcgagagag 74706
>emb|AL808017.4| Mouse DNA sequence from clone RP23-145G21 on chromosome X, complete sequence Length = 183291 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 484 cctgttattcccattcctgg 503 |||||||||||||||||||| Sbjct: 32251 cctgttattcccattcctgg 32232
>emb|AL606536.13| Mouse DNA sequence from clone RP23-93C9 on chromosome 1, complete sequence Length = 180844 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 tctcccttacgctggccact 51 |||||||||||||||||||| Sbjct: 74216 tctcccttacgctggccact 74197 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,116,062 Number of Sequences: 3902068 Number of extensions: 5116062 Number of successful extensions: 104951 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104704 Number of HSP's gapped (non-prelim): 247 length of query: 625 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 602 effective length of database: 17,143,297,704 effective search space: 10320265217808 effective search space used: 10320265217808 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)