| Clone Name | bags17l09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009549.1| Triticum aestivum clone wr1.pk161.f8:fis, full insert mRNA sequence Length = 902 Score = 783 bits (395), Expect = 0.0 Identities = 449/467 (96%) Strand = Plus / Plus Query: 101 caagcatgaatatgtggatagggtagcagagcatcgcttaaccaccgcaattagacctca 160 |||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| Sbjct: 1 caagcatgaatatgtggatagggtagcagagcatcgtttaaccactgcaattaggcctca 60 Query: 161 gattaatgctttcatggaaggatttaatgagctcattcctcgcgagctaatatccatttt 220 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gattaatgctttcatggaaggatttaatgagctcattcctcgcgagctaatatccatttt 120 Query: 221 taacgacaaagagtttgaactgctaatcagtggactcccagatattgacttggatgacct 280 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 121 taacgacaaagagtttgaactgctaatcagtggactccctgatattgacttggacgacct 180 Query: 281 aaaggcaaataccgagtactctggctacagcatagcttctccagttattcaatggttctg 340 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct: 181 aaaggcaaataccgagtattctggctacagcatagcttcaccagttattcaatggttctg 240 Query: 341 ggaaattgtccaaggtttcagcaaggaggacaaagctcgattcctccagttcgttacagg 400 ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 241 ggaaattgtacaaggtttcagcaaggaggacaaagctcgatttctccagttcgttactgg 300 Query: 401 cacttcaaaggtacctctggagggtttcagtgcgcttcaaggaatatctgggccacaacg 460 |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| | Sbjct: 301 cacttcaaaggtacctttggagggtttcagtgcgctccaaggaatatctgggccacaaag 360 Query: 461 gttccagatacacaaggcgtacggcagcaccaaccatcttccctctgctcatacttgctt 520 |||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| Sbjct: 361 gttccagatacacaaggcatacggcagcaccaaccatctgccctcagctcatacttgctt 420 Query: 521 taaccaactggacttgcctgagtatacatccaaagaccagctgcagg 567 ||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 421 taaccaactggacttgcctgaatacacatccaaagaccagctgcagg 467
>dbj|AK073264.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025K01, full insert sequence Length = 2905 Score = 533 bits (269), Expect = e-148 Identities = 485/557 (87%) Strand = Plus / Plus Query: 11 tgaagagaagctgatattgtatgagaaagctgaggtaactgattgtgagttgattcctgg 70 ||||||||||| ||||||||||||||| || ||||| ||||||| ||||||||||||||| Sbjct: 1823 tgaagagaagcggatattgtatgagaaggcagaggtgactgattatgagttgattcctgg 1882 Query: 71 agggcgtaatattagggtcactgaggagaacaagcatgaatatgtggatagggtagcaga 130 ||| || || || | |||||| |||||||||||||||||||||||| | |||| ||||| Sbjct: 1883 aggccgaaacatcaaggtcaccgaggagaacaagcatgaatatgtgaaccgggttgcaga 1942 Query: 131 gcatcgcttaaccaccgcaattagacctcagattaatgctttcatggaaggatttaatga 190 ||||| |||||||| || ||||| ||||| || | |||| ||||| ||||||||||| Sbjct: 1943 acatcgtttaaccactgctattaggcctcaaatcacctcttttatggagggatttaatga 2002 Query: 191 gctcattcctcgcgagctaatatccatttttaacgacaaagagtttgaactgctaatcag 250 |||||||||| ||||| ||||| || ||||| |||||||| |||||||||||||||| Sbjct: 2003 gctcattcctgaggagctgatatcaatctttaatgacaaagaacttgaactgctaatcag 2062 Query: 251 tggactcccagatattgacttggatgacctaaaggcaaataccgagtactctggctacag 310 |||||||||||| ||||||||||| || ||||| |||||||| || || ||||| ||||| Sbjct: 2063 tggactcccagacattgacttggacgatctaaaagcaaatacagaatattctgggtacag 2122 Query: 311 catagcttctccagttattcaatggttctgggaaattgtccaaggtttcagcaaggagga 370 ||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||| Sbjct: 2123 catagcttctccagtcattcagtggttctgggagattgtccaagggttcagcaaggagga 2182 Query: 371 caaagctcgattcctccagttcgttacaggcacttcaaaggtacctctggagggtttcag 430 |||||| || ||||| ||||| ||||| ||||| ||||||||||||||||| |||||||| Sbjct: 2183 caaagcccggttccttcagtttgttactggcacctcaaaggtacctctggaaggtttcag 2242 Query: 431 tgcgcttcaaggaatatctgggccacaacggttccagatacacaaggcgtacggcagcac 490 ||| || |||||||||||||| |||||||| ||||||||||||||||| ||||| ||||| Sbjct: 2243 tgcactccaaggaatatctggaccacaacgattccagatacacaaggcctacggaagcac 2302 Query: 491 caaccatcttccctctgctcatacttgctttaaccaactggacttgcctgagtatacatc 550 ||||||||| || || || |||||||||||||||||||| ||| | |||||||| ||||| Sbjct: 2303 caaccatctgccttcagcacatacttgctttaaccaactagaccttcctgagtacacatc 2362 Query: 551 caaagaccagctgcagg 567 ||||| ||||| |||| Sbjct: 2363 gaaagagcagctccagg 2379
>dbj|AK071849.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023120O04, full insert sequence Length = 1143 Score = 533 bits (269), Expect = e-148 Identities = 485/557 (87%) Strand = Plus / Plus Query: 11 tgaagagaagctgatattgtatgagaaagctgaggtaactgattgtgagttgattcctgg 70 ||||||||||| ||||||||||||||| || ||||| ||||||| ||||||||||||||| Sbjct: 8 tgaagagaagcggatattgtatgagaaggcagaggtgactgattatgagttgattcctgg 67 Query: 71 agggcgtaatattagggtcactgaggagaacaagcatgaatatgtggatagggtagcaga 130 ||| || || || | |||||| |||||||||||||||||||||||| | |||| ||||| Sbjct: 68 aggccgaaacatcaaggtcaccgaggagaacaagcatgaatatgtgaaccgggttgcaga 127 Query: 131 gcatcgcttaaccaccgcaattagacctcagattaatgctttcatggaaggatttaatga 190 ||||| |||||||| || ||||| ||||| || | |||| ||||| ||||||||||| Sbjct: 128 acatcgtttaaccactgctattaggcctcaaatcacctcttttatggagggatttaatga 187 Query: 191 gctcattcctcgcgagctaatatccatttttaacgacaaagagtttgaactgctaatcag 250 |||||||||| ||||| ||||| || ||||| |||||||| |||||||||||||||| Sbjct: 188 gctcattcctgaggagctgatatcaatctttaatgacaaagaacttgaactgctaatcag 247 Query: 251 tggactcccagatattgacttggatgacctaaaggcaaataccgagtactctggctacag 310 |||||||||||| ||||||||||| || ||||| |||||||| || || ||||| ||||| Sbjct: 248 tggactcccagacattgacttggacgatctaaaagcaaatacagaatattctgggtacag 307 Query: 311 catagcttctccagttattcaatggttctgggaaattgtccaaggtttcagcaaggagga 370 ||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||| Sbjct: 308 catagcttctccagtcattcagtggttctgggagattgtccaagggttcagcaaggagga 367 Query: 371 caaagctcgattcctccagttcgttacaggcacttcaaaggtacctctggagggtttcag 430 |||||| || ||||| ||||| ||||| ||||| ||||||||||||||||| |||||||| Sbjct: 368 caaagcccggttccttcagtttgttactggcacctcaaaggtacctctggaaggtttcag 427 Query: 431 tgcgcttcaaggaatatctgggccacaacggttccagatacacaaggcgtacggcagcac 490 ||| || |||||||||||||| |||||||| ||||||||||||||||| ||||| ||||| Sbjct: 428 tgcactccaaggaatatctggaccacaacgattccagatacacaaggcctacggaagcac 487 Query: 491 caaccatcttccctctgctcatacttgctttaaccaactggacttgcctgagtatacatc 550 ||||||||| || || || |||||||||||||||||||| ||| | |||||||| ||||| Sbjct: 488 caaccatctgccttcagcacatacttgctttaaccaactagaccttcctgagtacacatc 547 Query: 551 caaagaccagctgcagg 567 ||||| ||||| |||| Sbjct: 548 gaaagagcagctccagg 564
>gb|AY104229.1| Zea mays PCO069180 mRNA sequence Length = 2499 Score = 484 bits (244), Expect = e-133 Identities = 478/556 (85%) Strand = Plus / Plus Query: 12 gaagagaagctgatattgtatgagaaagctgaggtaactgattgtgagttgattcctgga 71 |||||||| ||||||||||| ||||| || ||||| |||||||||||||||||||| ||| Sbjct: 1482 gaagagaaactgatattgtacgagaaggcagaggtcactgattgtgagttgattccagga 1541 Query: 72 gggcgtaatattagggtcactgaggagaacaagcatgaatatgtggatagggtagcagag 131 |||||||| || ||||| ||||||||||| || ||| ||||||| ||| ||||||||||| Sbjct: 1542 gggcgtaacatcagggttactgaggagaataaacatcaatatgtagatcgggtagcagag 1601 Query: 132 catcgcttaaccaccgcaattagacctcagattaatgctttcatggaaggatttaatgag 191 |||||| | || || ||||| || ||||| |||||||| ||| ||||||| |||||||| Sbjct: 1602 catcgcctgacgactgcaatcaggcctcaaattaatgccttcctggaagggtttaatgaa 1661 Query: 192 ctcattcctcgcgagctaatatccatttttaacgacaaagagtttgaactgctaatcagt 251 |||||||| || ||||| ||||| || || |||||||||||| ||||||| || || || Sbjct: 1662 ctcattccacgggagctgatatctatcttcaacgacaaagagcttgaacttctgattagc 1721 Query: 252 ggactcccagatattgacttggatgacctaaaggcaaataccgagtactctggctacagc 311 || || ||||||||||||||||| || | || |||||||| || || |||||||||||| Sbjct: 1722 ggtcttccagatattgacttggacgatttgaaagcaaatacagaatattctggctacagc 1781 Query: 312 atagcttctccagttattcaatggttctgggaaattgtccaaggtttcagcaaggaggac 371 ||||| |||||||| || || |||||||||||||| || || || ||||||||||| ||| Sbjct: 1782 atagcctctccagtcatccagtggttctgggaaatcgttcaggggttcagcaaggaagac 1841 Query: 372 aaagctcgattcctccagttcgttacaggcacttcaaaggtacctctggagggtttcagt 431 ||||| || |||||||||||||| || ||||||||||||||||| |||| ||||| ||| Sbjct: 1842 aaagcccggttcctccagttcgtcactggcacttcaaaggtaccgttggaaggttttagt 1901 Query: 432 gcgcttcaaggaatatctgggccacaacggttccagatacacaaggcgtacggcagcacc 491 || |||||||| || |||||||||||| |||| |||||||| ||||| ||||||||||| Sbjct: 1902 gcacttcaagggatctctgggccacaaaggtttcagatacataaggcctacggcagcacg 1961 Query: 492 aaccatcttccctctgctcatacttgctttaaccaactggacttgcctgagtatacatcc 551 |||||||| || || ||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 1962 aaccatctgccttcagctcatacttgctttaaccaactagacttgcctgagtacacatcc 2021 Query: 552 aaagaccagctgcagg 567 ||||| ||||| |||| Sbjct: 2022 aaagagcagctccagg 2037
>gb|BT017093.1| Zea mays clone EL01N0361E03.c mRNA sequence Length = 1284 Score = 460 bits (232), Expect = e-126 Identities = 475/556 (85%) Strand = Plus / Plus Query: 12 gaagagaagctgatattgtatgagaaagctgaggtaactgattgtgagttgattcctgga 71 |||||||| ||||||||||| ||||| || ||||| |||||||||||||||||||| ||| Sbjct: 271 gaagagaaactgatattgtacgagaaggcagaggtcactgattgtgagttgattccagga 330 Query: 72 gggcgtaatattagggtcactgaggagaacaagcatgaatatgtggatagggtagcagag 131 |||||||| || ||||| ||||||||||| || ||| ||||||| ||| ||||||||||| Sbjct: 331 gggcgtaacatcagggttactgaggagaataaacatcaatatgtagatcgggtagcagag 390 Query: 132 catcgcttaaccaccgcaattagacctcagattaatgctttcatggaaggatttaatgag 191 ||||| | || || ||||| || ||||| |||||||| ||| ||||||| |||||||| Sbjct: 391 catcgactgacgactgcaatcaggcctcaaattaatgccttcctggaagggtttaatgaa 450 Query: 192 ctcattcctcgcgagctaatatccatttttaacgacaaagagtttgaactgctaatcagt 251 |||||||| || ||||| ||||| || || |||||||||||| ||||||| || || || Sbjct: 451 ctcattccacgggagctgatatctatcttcaacgacaaagagcttgaacttctgattagc 510 Query: 252 ggactcccagatattgacttggatgacctaaaggcaaataccgagtactctggctacagc 311 || || ||||||||||||||||| || | || |||||||| || || |||||||||||| Sbjct: 511 ggtcttccagatattgacttggacgatttgaaagcaaatacagaatattctggctacagc 570 Query: 312 atagcttctccagttattcaatggttctgggaaattgtccaaggtttcagcaaggaggac 371 ||||| |||||||| || || |||||||||||||| || || || ||||||||||| ||| Sbjct: 571 atagcctctccagtcatccagtggttctgggaaatcgttcaggggttcagcaaggaagac 630 Query: 372 aaagctcgattcctccagttcgttacaggcacttcaaaggtacctctggagggtttcagt 431 ||||| || |||||||||||||| || ||||||||||||||||| |||| ||||| ||| Sbjct: 631 aaagcccggttcctccagttcgtcactggcacttcaaaggtaccgttggaaggttttagt 690 Query: 432 gcgcttcaaggaatatctgggccacaacggttccagatacacaaggcgtacggcagcacc 491 || |||||||| || |||||||||||| |||| |||||||| ||||| ||||||||||| Sbjct: 691 gcacttcaagggatctctgggccacaaaggtttcagatacataaggcctacggcagcacg 750 Query: 492 aaccatcttccctctgctcatacttgctttaaccaactggacttgcctgagtatacatcc 551 |||||||| || || ||||||||||||||||| | ||| |||||||||||||| |||||| Sbjct: 751 aaccatctgccttcagctcatacttgctttaaaccactagacttgcctgagtacacatcc 810 Query: 552 aaagaccagctgcagg 567 ||||| ||||| |||| Sbjct: 811 aaagagcagctccagg 826
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 182 bits (92), Expect = 8e-43 Identities = 194/228 (85%) Strand = Plus / Plus Query: 43 aggtaactgattgtgagttgattcctggagggcgtaatattagggtcactgaggagaaca 102 |||| ||||||| |||||||||||||||||| || || || | |||||| |||||||||| Sbjct: 13744882 aggtgactgattatgagttgattcctggaggccgaaacatcaaggtcaccgaggagaaca 13744941 Query: 103 agcatgaatatgtggatagggtagcagagcatcgcttaaccaccgcaattagacctcaga 162 |||||||||||||| | |||| ||||| ||||| |||||||| || ||||| ||||| | Sbjct: 13744942 agcatgaatatgtgaaccgggttgcagaacatcgtttaaccactgctattaggcctcaaa 13745001 Query: 163 ttaatgctttcatggaaggatttaatgagctcattcctcgcgagctaatatccattttta 222 | | |||| ||||| ||||||||||||||||||||| ||||| ||||| || |||| Sbjct: 13745002 tcacctcttttatggagggatttaatgagctcattcctgaggagctgatatcaatcttta 13745061 Query: 223 acgacaaagagtttgaactgctaatcagtggactcccagatattgact 270 | |||||||| |||||||||||||||||||||||||||| ||||||| Sbjct: 13745062 atgacaaagaacttgaactgctaatcagtggactcccagacattgact 13745109 Score = 151 bits (76), Expect = 3e-33 Identities = 121/136 (88%) Strand = Plus / Plus Query: 279 ctaaaggcaaataccgagtactctggctacagcatagcttctccagttattcaatggttc 338 ||||| |||||||| || || ||||| |||||||||||||||||||| ||||| |||||| Sbjct: 13745206 ctaaaagcaaatacagaatattctgggtacagcatagcttctccagtcattcagtggttc 13745265 Query: 339 tgggaaattgtccaaggtttcagcaaggaggacaaagctcgattcctccagttcgttaca 398 ||||| ||||||||||| |||||||||||||||||||| || ||||| ||||| ||||| Sbjct: 13745266 tgggagattgtccaagggttcagcaaggaggacaaagcccggttccttcagtttgttact 13745325 Query: 399 ggcacttcaaaggtac 414 ||||| |||||||||| Sbjct: 13745326 ggcacctcaaaggtac 13745341 Score = 129 bits (65), Expect = 1e-26 Identities = 98/109 (89%) Strand = Plus / Plus Query: 409 aggtacctctggagggtttcagtgcgcttcaaggaatatctgggccacaacggttccaga 468 ||||||||||||| ||||||||||| || |||||||||||||| |||||||| ||||||| Sbjct: 13745964 aggtacctctggaaggtttcagtgcactccaaggaatatctggaccacaacgattccaga 13746023 Query: 469 tacacaaggcgtacggcagcaccaaccatcttccctctgctcatacttg 517 |||||||||| ||||| |||||||||||||| || || || |||||||| Sbjct: 13746024 tacacaaggcctacggaagcaccaaccatctgccttcagcacatacttg 13746072 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Plus Query: 11 tgaagagaagctgatattgtatgagaaagctgaggta 47 ||||||||||| ||||||||||||||| || |||||| Sbjct: 13744767 tgaagagaagcggatattgtatgagaaggcagaggta 13744803 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Plus Query: 517 gctttaaccaactggacttgcctgagtatacatccaaagaccagctgcagg 567 ||||||||||||| ||| | |||||||| ||||| ||||| ||||| |||| Sbjct: 13746241 gctttaaccaactagaccttcctgagtacacatcgaaagagcagctccagg 13746291
>emb|AL935071.4|CNS08CCN Oryza sativa chromosome 12, . BAC OSJNBb0016C24 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 87778 Score = 182 bits (92), Expect = 8e-43 Identities = 194/228 (85%) Strand = Plus / Plus Query: 43 aggtaactgattgtgagttgattcctggagggcgtaatattagggtcactgaggagaaca 102 |||| ||||||| |||||||||||||||||| || || || | |||||| |||||||||| Sbjct: 8190 aggtgactgattatgagttgattcctggaggccgaaacatcaaggtcaccgaggagaaca 8249 Query: 103 agcatgaatatgtggatagggtagcagagcatcgcttaaccaccgcaattagacctcaga 162 |||||||||||||| | |||| ||||| ||||| |||||||| || ||||| ||||| | Sbjct: 8250 agcatgaatatgtgaaccgggttgcagaacatcgtttaaccactgctattaggcctcaaa 8309 Query: 163 ttaatgctttcatggaaggatttaatgagctcattcctcgcgagctaatatccattttta 222 | | |||| ||||| ||||||||||||||||||||| ||||| ||||| || |||| Sbjct: 8310 tcacctcttttatggagggatttaatgagctcattcctgaggagctgatatcaatcttta 8369 Query: 223 acgacaaagagtttgaactgctaatcagtggactcccagatattgact 270 | |||||||| |||||||||||||||||||||||||||| ||||||| Sbjct: 8370 atgacaaagaacttgaactgctaatcagtggactcccagacattgact 8417 Score = 151 bits (76), Expect = 3e-33 Identities = 121/136 (88%) Strand = Plus / Plus Query: 279 ctaaaggcaaataccgagtactctggctacagcatagcttctccagttattcaatggttc 338 ||||| |||||||| || || ||||| |||||||||||||||||||| ||||| |||||| Sbjct: 8514 ctaaaagcaaatacagaatattctgggtacagcatagcttctccagtcattcagtggttc 8573 Query: 339 tgggaaattgtccaaggtttcagcaaggaggacaaagctcgattcctccagttcgttaca 398 ||||| ||||||||||| |||||||||||||||||||| || ||||| ||||| ||||| Sbjct: 8574 tgggagattgtccaagggttcagcaaggaggacaaagcccggttccttcagtttgttact 8633 Query: 399 ggcacttcaaaggtac 414 ||||| |||||||||| Sbjct: 8634 ggcacctcaaaggtac 8649 Score = 129 bits (65), Expect = 1e-26 Identities = 98/109 (89%) Strand = Plus / Plus Query: 409 aggtacctctggagggtttcagtgcgcttcaaggaatatctgggccacaacggttccaga 468 ||||||||||||| ||||||||||| || |||||||||||||| |||||||| ||||||| Sbjct: 9270 aggtacctctggaaggtttcagtgcactccaaggaatatctggaccacaacgattccaga 9329 Query: 469 tacacaaggcgtacggcagcaccaaccatcttccctctgctcatacttg 517 |||||||||| ||||| |||||||||||||| || || || |||||||| Sbjct: 9330 tacacaaggcctacggaagcaccaaccatctgccttcagcacatacttg 9378 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Plus Query: 11 tgaagagaagctgatattgtatgagaaagctgaggta 47 ||||||||||| ||||||||||||||| || |||||| Sbjct: 8075 tgaagagaagcggatattgtatgagaaggcagaggta 8111 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Plus Query: 517 gctttaaccaactggacttgcctgagtatacatccaaagaccagctgcagg 567 ||||||||||||| ||| | |||||||| ||||| ||||| ||||| |||| Sbjct: 9547 gctttaaccaactagaccttcctgagtacacatcgaaagagcagctccagg 9597
>emb|AL713910.2|CNS07YQB Oryza sativa chromosome 12, . BAC OSJNBa0042B03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145118 Score = 182 bits (92), Expect = 8e-43 Identities = 194/228 (85%) Strand = Plus / Plus Query: 43 aggtaactgattgtgagttgattcctggagggcgtaatattagggtcactgaggagaaca 102 |||| ||||||| |||||||||||||||||| || || || | |||||| |||||||||| Sbjct: 78483 aggtgactgattatgagttgattcctggaggccgaaacatcaaggtcaccgaggagaaca 78542 Query: 103 agcatgaatatgtggatagggtagcagagcatcgcttaaccaccgcaattagacctcaga 162 |||||||||||||| | |||| ||||| ||||| |||||||| || ||||| ||||| | Sbjct: 78543 agcatgaatatgtgaaccgggttgcagaacatcgtttaaccactgctattaggcctcaaa 78602 Query: 163 ttaatgctttcatggaaggatttaatgagctcattcctcgcgagctaatatccattttta 222 | | |||| ||||| ||||||||||||||||||||| ||||| ||||| || |||| Sbjct: 78603 tcacctcttttatggagggatttaatgagctcattcctgaggagctgatatcaatcttta 78662 Query: 223 acgacaaagagtttgaactgctaatcagtggactcccagatattgact 270 | |||||||| |||||||||||||||||||||||||||| ||||||| Sbjct: 78663 atgacaaagaacttgaactgctaatcagtggactcccagacattgact 78710 Score = 151 bits (76), Expect = 3e-33 Identities = 121/136 (88%) Strand = Plus / Plus Query: 279 ctaaaggcaaataccgagtactctggctacagcatagcttctccagttattcaatggttc 338 ||||| |||||||| || || ||||| |||||||||||||||||||| ||||| |||||| Sbjct: 78807 ctaaaagcaaatacagaatattctgggtacagcatagcttctccagtcattcagtggttc 78866 Query: 339 tgggaaattgtccaaggtttcagcaaggaggacaaagctcgattcctccagttcgttaca 398 ||||| ||||||||||| |||||||||||||||||||| || ||||| ||||| ||||| Sbjct: 78867 tgggagattgtccaagggttcagcaaggaggacaaagcccggttccttcagtttgttact 78926 Query: 399 ggcacttcaaaggtac 414 ||||| |||||||||| Sbjct: 78927 ggcacctcaaaggtac 78942 Score = 129 bits (65), Expect = 1e-26 Identities = 98/109 (89%) Strand = Plus / Plus Query: 409 aggtacctctggagggtttcagtgcgcttcaaggaatatctgggccacaacggttccaga 468 ||||||||||||| ||||||||||| || |||||||||||||| |||||||| ||||||| Sbjct: 79565 aggtacctctggaaggtttcagtgcactccaaggaatatctggaccacaacgattccaga 79624 Query: 469 tacacaaggcgtacggcagcaccaaccatcttccctctgctcatacttg 517 |||||||||| ||||| |||||||||||||| || || || |||||||| Sbjct: 79625 tacacaaggcctacggaagcaccaaccatctgccttcagcacatacttg 79673 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Plus Query: 11 tgaagagaagctgatattgtatgagaaagctgaggta 47 ||||||||||| ||||||||||||||| || |||||| Sbjct: 78368 tgaagagaagcggatattgtatgagaaggcagaggta 78404 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Plus Query: 517 gctttaaccaactggacttgcctgagtatacatccaaagaccagctgcagg 567 ||||||||||||| ||| | |||||||| ||||| ||||| ||||| |||| Sbjct: 79842 gctttaaccaactagaccttcctgagtacacatcgaaagagcagctccagg 79892
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 182 bits (92), Expect = 8e-43 Identities = 194/228 (85%) Strand = Plus / Plus Query: 43 aggtaactgattgtgagttgattcctggagggcgtaatattagggtcactgaggagaaca 102 |||| ||||||| |||||||||||||||||| || || || | |||||| |||||||||| Sbjct: 13699162 aggtgactgattatgagttgattcctggaggccgaaacatcaaggtcaccgaggagaaca 13699221 Query: 103 agcatgaatatgtggatagggtagcagagcatcgcttaaccaccgcaattagacctcaga 162 |||||||||||||| | |||| ||||| ||||| |||||||| || ||||| ||||| | Sbjct: 13699222 agcatgaatatgtgaaccgggttgcagaacatcgtttaaccactgctattaggcctcaaa 13699281 Query: 163 ttaatgctttcatggaaggatttaatgagctcattcctcgcgagctaatatccattttta 222 | | |||| ||||| ||||||||||||||||||||| ||||| ||||| || |||| Sbjct: 13699282 tcacctcttttatggagggatttaatgagctcattcctgaggagctgatatcaatcttta 13699341 Query: 223 acgacaaagagtttgaactgctaatcagtggactcccagatattgact 270 | |||||||| |||||||||||||||||||||||||||| ||||||| Sbjct: 13699342 atgacaaagaacttgaactgctaatcagtggactcccagacattgact 13699389 Score = 151 bits (76), Expect = 3e-33 Identities = 121/136 (88%) Strand = Plus / Plus Query: 279 ctaaaggcaaataccgagtactctggctacagcatagcttctccagttattcaatggttc 338 ||||| |||||||| || || ||||| |||||||||||||||||||| ||||| |||||| Sbjct: 13699486 ctaaaagcaaatacagaatattctgggtacagcatagcttctccagtcattcagtggttc 13699545 Query: 339 tgggaaattgtccaaggtttcagcaaggaggacaaagctcgattcctccagttcgttaca 398 ||||| ||||||||||| |||||||||||||||||||| || ||||| ||||| ||||| Sbjct: 13699546 tgggagattgtccaagggttcagcaaggaggacaaagcccggttccttcagtttgttact 13699605 Query: 399 ggcacttcaaaggtac 414 ||||| |||||||||| Sbjct: 13699606 ggcacctcaaaggtac 13699621 Score = 129 bits (65), Expect = 1e-26 Identities = 98/109 (89%) Strand = Plus / Plus Query: 409 aggtacctctggagggtttcagtgcgcttcaaggaatatctgggccacaacggttccaga 468 ||||||||||||| ||||||||||| || |||||||||||||| |||||||| ||||||| Sbjct: 13700244 aggtacctctggaaggtttcagtgcactccaaggaatatctggaccacaacgattccaga 13700303 Query: 469 tacacaaggcgtacggcagcaccaaccatcttccctctgctcatacttg 517 |||||||||| ||||| |||||||||||||| || || || |||||||| Sbjct: 13700304 tacacaaggcctacggaagcaccaaccatctgccttcagcacatacttg 13700352 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Plus Query: 11 tgaagagaagctgatattgtatgagaaagctgaggta 47 ||||||||||| ||||||||||||||| || |||||| Sbjct: 13699047 tgaagagaagcggatattgtatgagaaggcagaggta 13699083 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Plus Query: 517 gctttaaccaactggacttgcctgagtatacatccaaagaccagctgcagg 567 ||||||||||||| ||| | |||||||| ||||| ||||| ||||| |||| Sbjct: 13700521 gctttaaccaactagaccttcctgagtacacatcgaaagagcagctccagg 13700571
>emb|BX664709.2|CNS09SBZ Oryza sativa chromosome 12, . BAC B1270G11 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155451 Score = 182 bits (92), Expect = 8e-43 Identities = 194/228 (85%) Strand = Plus / Plus Query: 43 aggtaactgattgtgagttgattcctggagggcgtaatattagggtcactgaggagaaca 102 |||| ||||||| |||||||||||||||||| || || || | |||||| |||||||||| Sbjct: 60541 aggtgactgattatgagttgattcctggaggccgaaacatcaaggtcaccgaggagaaca 60600 Query: 103 agcatgaatatgtggatagggtagcagagcatcgcttaaccaccgcaattagacctcaga 162 |||||||||||||| | |||| ||||| ||||| |||||||| || ||||| ||||| | Sbjct: 60601 agcatgaatatgtgaaccgggttgcagaacatcgtttaaccactgctattaggcctcaaa 60660 Query: 163 ttaatgctttcatggaaggatttaatgagctcattcctcgcgagctaatatccattttta 222 | | |||| ||||| ||||||||||||||||||||| ||||| ||||| || |||| Sbjct: 60661 tcacctcttttatggagggatttaatgagctcattcctgaggagctgatatcaatcttta 60720 Query: 223 acgacaaagagtttgaactgctaatcagtggactcccagatattgact 270 | |||||||| |||||||||||||||||||||||||||| ||||||| Sbjct: 60721 atgacaaagaacttgaactgctaatcagtggactcccagacattgact 60768 Score = 151 bits (76), Expect = 3e-33 Identities = 121/136 (88%) Strand = Plus / Plus Query: 279 ctaaaggcaaataccgagtactctggctacagcatagcttctccagttattcaatggttc 338 ||||| |||||||| || || ||||| |||||||||||||||||||| ||||| |||||| Sbjct: 60865 ctaaaagcaaatacagaatattctgggtacagcatagcttctccagtcattcagtggttc 60924 Query: 339 tgggaaattgtccaaggtttcagcaaggaggacaaagctcgattcctccagttcgttaca 398 ||||| ||||||||||| |||||||||||||||||||| || ||||| ||||| ||||| Sbjct: 60925 tgggagattgtccaagggttcagcaaggaggacaaagcccggttccttcagtttgttact 60984 Query: 399 ggcacttcaaaggtac 414 ||||| |||||||||| Sbjct: 60985 ggcacctcaaaggtac 61000 Score = 129 bits (65), Expect = 1e-26 Identities = 98/109 (89%) Strand = Plus / Plus Query: 409 aggtacctctggagggtttcagtgcgcttcaaggaatatctgggccacaacggttccaga 468 ||||||||||||| ||||||||||| || |||||||||||||| |||||||| ||||||| Sbjct: 61623 aggtacctctggaaggtttcagtgcactccaaggaatatctggaccacaacgattccaga 61682 Query: 469 tacacaaggcgtacggcagcaccaaccatcttccctctgctcatacttg 517 |||||||||| ||||| |||||||||||||| || || || |||||||| Sbjct: 61683 tacacaaggcctacggaagcaccaaccatctgccttcagcacatacttg 61731 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Plus Query: 11 tgaagagaagctgatattgtatgagaaagctgaggta 47 ||||||||||| ||||||||||||||| || |||||| Sbjct: 60426 tgaagagaagcggatattgtatgagaaggcagaggta 60462 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Plus Query: 517 gctttaaccaactggacttgcctgagtatacatccaaagaccagctgcagg 567 ||||||||||||| ||| | |||||||| ||||| ||||| ||||| |||| Sbjct: 61900 gctttaaccaactagaccttcctgagtacacatcgaaagagcagctccagg 61950
>emb|CT963112.1| Medicago truncatula chromosome 5 clone mth2-117d22, COMPLETE SEQUENCE Length = 118597 Score = 61.9 bits (31), Expect = 2e-06 Identities = 112/139 (80%) Strand = Plus / Minus Query: 43 aggtaactgattgtgagttgattcctggagggcgtaatattagggtcactgaggagaaca 102 |||| ||||||| ||||||||||||||| || || ||||| | || ||||| ||||| | Sbjct: 29054 aggtgactgattatgagttgattcctggcggacggaatatcaaagttactgaagagaata 28995 Query: 103 agcatgaatatgtggatagggtagcagagcatcgcttaaccaccgcaattagacctcaga 162 ||||| | ||||| ||| ||| || |||||||| || || || || ||| ||||||| | Sbjct: 28994 agcatcagtatgttgatttggttgctgagcatcggttgacaactgctattcgacctcaaa 28935 Query: 163 ttaatgctttcatggaagg 181 | ||||||||| ||||||| Sbjct: 28934 taaatgctttcttggaagg 28916 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Minus Query: 321 ccagttattcaatggttctgggaaattgtccaaggtttcagcaaggaggacaaagctcg 379 ||||||||||||||||| ||||| |||| ||||| || ||||| || ||||| ||||| Sbjct: 28645 ccagttattcaatggttttgggaggttgttcaaggcttaagcaaagaagacaaggctcg 28587
>ref|XM_450304.1| Oryza sativa (japonica cultivar-group), mRNA Length = 11151 Score = 48.1 bits (24), Expect = 0.032 Identities = 42/48 (87%) Strand = Plus / Plus Query: 498 cttccctctgctcatacttgctttaaccaactggacttgcctgagtat 545 ||||| ||||| |||||||||||||| |||||||| || || |||||| Sbjct: 11029 cttccatctgcccatacttgctttaatcaactggatttaccagagtat 11076 Score = 40.1 bits (20), Expect = 7.7 Identities = 35/40 (87%) Strand = Plus / Plus Query: 333 tggttctgggaaattgtccaaggtttcagcaaggaggaca 372 |||||||||||| | || | ||||||||||||||||||| Sbjct: 10864 tggttctgggaagtagttaatggtttcagcaaggaggaca 10903 Score = 40.1 bits (20), Expect = 7.7 Identities = 38/44 (86%) Strand = Plus / Plus Query: 141 accaccgcaattagacctcagattaatgctttcatggaaggatt 184 ||||| |||||| | ||||| |||||||||||| | |||||||| Sbjct: 10672 accacagcaattcgccctcaaattaatgctttccttgaaggatt 10715
>dbj|AK070046.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039K21, full insert sequence Length = 4353 Score = 48.1 bits (24), Expect = 0.032 Identities = 42/48 (87%) Strand = Plus / Plus Query: 498 cttccctctgctcatacttgctttaaccaactggacttgcctgagtat 545 ||||| ||||| |||||||||||||| |||||||| || || |||||| Sbjct: 4098 cttccatctgcccatacttgctttaatcaactggatttaccagagtat 4145 Score = 40.1 bits (20), Expect = 7.7 Identities = 35/40 (87%) Strand = Plus / Plus Query: 333 tggttctgggaaattgtccaaggtttcagcaaggaggaca 372 |||||||||||| | || | ||||||||||||||||||| Sbjct: 3933 tggttctgggaagtagttaatggtttcagcaaggaggaca 3972 Score = 40.1 bits (20), Expect = 7.7 Identities = 38/44 (86%) Strand = Plus / Plus Query: 141 accaccgcaattagacctcagattaatgctttcatggaaggatt 184 ||||| |||||| | ||||| |||||||||||| | |||||||| Sbjct: 3741 accacagcaattcgccctcaaattaatgctttccttgaaggatt 3784
>dbj|AK060465.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-C10, full insert sequence Length = 1797 Score = 48.1 bits (24), Expect = 0.032 Identities = 42/48 (87%) Strand = Plus / Plus Query: 498 cttccctctgctcatacttgctttaaccaactggacttgcctgagtat 545 ||||| ||||| |||||||||||||| |||||||| || || |||||| Sbjct: 1282 cttccatctgcccatacttgctttaatcaactggatttaccagagtat 1329 Score = 40.1 bits (20), Expect = 7.7 Identities = 35/40 (87%) Strand = Plus / Plus Query: 333 tggttctgggaaattgtccaaggtttcagcaaggaggaca 372 |||||||||||| | || | ||||||||||||||||||| Sbjct: 1117 tggttctgggaagtagttaatggtttcagcaaggaggaca 1156 Score = 40.1 bits (20), Expect = 7.7 Identities = 38/44 (86%) Strand = Plus / Plus Query: 141 accaccgcaattagacctcagattaatgctttcatggaaggatt 184 ||||| |||||| | ||||| |||||||||||| | |||||||| Sbjct: 925 accacagcaattcgccctcaaattaatgctttccttgaaggatt 968
>ref|NM_105700.1| Arabidopsis thaliana UPL2 (UBIQUITIN-PROTEIN LIGASE 2); ubiquitin-protein ligase AT1G70320 (UPL2) mRNA, complete cds Length = 10977 Score = 46.1 bits (23), Expect = 0.12 Identities = 104/131 (79%) Strand = Plus / Plus Query: 168 gctttcatggaaggatttaatgagctcattcctcgcgagctaatatccatttttaacgac 227 |||||| | ||||| || |||||| | || ||||| ||||| |||| ||||| || || Sbjct: 10525 gctttcctagaaggcttaaatgagttgatacctcgtgagcttgtatcaattttcaatgat 10584 Query: 228 aaagagtttgaactgctaatcagtggactcccagatattgacttggatgacctaaaggca 287 |||||| |||| || |||||||| || | || || ||||| || ||||| ||||| ||| Sbjct: 10585 aaagagcttgagctcctaatcagcgggttgcctgagattgattttgatgatctaaaagca 10644 Query: 288 aataccgagta 298 ||||||||||| Sbjct: 10645 aataccgagta 10655
>ref|XM_643552.1| Entamoeba histolytica HM-1:IMSS ubiquitin ligase (415.t00009) partial mRNA Length = 7251 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 324 gttattcaatggttctgggaaat 346 ||||||||||||||||||||||| Sbjct: 6958 gttattcaatggttctgggaaat 6980
>gb|BT008830.1| Arabidopsis thaliana At1g70320 mRNA, complete cds Length = 1035 Score = 46.1 bits (23), Expect = 0.12 Identities = 104/131 (79%) Strand = Plus / Plus Query: 168 gctttcatggaaggatttaatgagctcattcctcgcgagctaatatccatttttaacgac 227 |||||| | ||||| || |||||| | || ||||| ||||| |||| ||||| || || Sbjct: 583 gctttcctagaaggcttaaatgagttgatacctcgtgagcttgtatcaattttcaatgat 642 Query: 228 aaagagtttgaactgctaatcagtggactcccagatattgacttggatgacctaaaggca 287 |||||| |||| || |||||||| || | || || ||||| || ||||| ||||| ||| Sbjct: 643 aaagagcttgagctcctaatcagcgggttgcctgagattgattttgatgatctaaaagca 702 Query: 288 aataccgagta 298 ||||||||||| Sbjct: 703 aataccgagta 713
>gb|BT002065.1| Arabidopsis thaliana Unknown protein (At1g70320) mRNA, complete cds Length = 1305 Score = 46.1 bits (23), Expect = 0.12 Identities = 104/131 (79%) Strand = Plus / Plus Query: 168 gctttcatggaaggatttaatgagctcattcctcgcgagctaatatccatttttaacgac 227 |||||| | ||||| || |||||| | || ||||| ||||| |||| ||||| || || Sbjct: 634 gctttcctagaaggcttaaatgagttgatacctcgtgagcttgtatcaattttcaatgat 693 Query: 228 aaagagtttgaactgctaatcagtggactcccagatattgacttggatgacctaaaggca 287 |||||| |||| || |||||||| || | || || ||||| || ||||| ||||| ||| Sbjct: 694 aaagagcttgagctcctaatcagcgggttgcctgagattgattttgatgatctaaaagca 753 Query: 288 aataccgagta 298 ||||||||||| Sbjct: 754 aataccgagta 764
>ref|XM_518654.1| PREDICTED: Pan troglodytes similar to HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1 (LOC462900), mRNA Length = 2790 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 320 tccagttattcaatggttctgggaaattgt 349 |||||||||||| |||||||||||| |||| Sbjct: 2496 tccagttattcagtggttctgggaagttgt 2525
>ref|NM_020771.2| Homo sapiens HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1 (HACE1), mRNA Length = 4614 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 320 tccagttattcaatggttctgggaaattgt 349 |||||||||||| |||||||||||| |||| Sbjct: 2671 tccagttattcagtggttctgggaagttgt 2700
>ref|NM_172473.1| Mus musculus HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1 (Hace1), mRNA Length = 3625 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 320 tccagttattcaatggttctgggaaattgt 349 |||||||||||| |||||||||||| |||| Sbjct: 2617 tccagttattcagtggttctgggaagttgt 2646
>ref|XM_360709.1| Magnaporthe grisea 70-15 hypothetical protein (MG03252.4) partial mRNA Length = 12147 Score = 44.1 bits (22), Expect = 0.49 Identities = 34/38 (89%) Strand = Plus / Plus Query: 508 ctcatacttgctttaaccaactggacttgcctgagtat 545 ||||||| ||||| |||||||||||| | ||||||||| Sbjct: 12035 ctcatacatgcttcaaccaactggaccttcctgagtat 12072
>ref|XM_605958.2| PREDICTED: Bos taurus similar to HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1, transcript variant 1 (LOC527565), mRNA Length = 2707 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 320 tccagttattcaatggttctgggaaattgt 349 |||||||||||| |||||||||||| |||| Sbjct: 1703 tccagttattcagtggttctgggaagttgt 1732
>ref|XM_874588.1| PREDICTED: Bos taurus similar to HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1, transcript variant 2 (LOC527565), mRNA Length = 2162 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 320 tccagttattcaatggttctgggaaattgt 349 |||||||||||| |||||||||||| |||| Sbjct: 1158 tccagttattcagtggttctgggaagttgt 1187
>ref|XM_532247.2| PREDICTED: Canis familiaris similar to HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1, transcript variant 1 (LOC475010), mRNA Length = 3478 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 320 tccagttattcaatggttctgggaaattgt 349 |||||||||||| |||||||||||| |||| Sbjct: 2546 tccagttattcagtggttctgggaagttgt 2575
>ref|XM_863241.1| PREDICTED: Canis familiaris similar to HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1, transcript variant 7 (LOC475010), mRNA Length = 3478 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 320 tccagttattcaatggttctgggaaattgt 349 |||||||||||| |||||||||||| |||| Sbjct: 2546 tccagttattcagtggttctgggaagttgt 2575
>ref|XM_863239.1| PREDICTED: Canis familiaris similar to HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1, transcript variant 6 (LOC475010), mRNA Length = 3250 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 320 tccagttattcaatggttctgggaaattgt 349 |||||||||||| |||||||||||| |||| Sbjct: 2318 tccagttattcagtggttctgggaagttgt 2347
>ref|XM_863230.1| PREDICTED: Canis familiaris similar to HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1, transcript variant 4 (LOC475010), mRNA Length = 3081 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 320 tccagttattcaatggttctgggaaattgt 349 |||||||||||| |||||||||||| |||| Sbjct: 2039 tccagttattcagtggttctgggaagttgt 2068
>ref|XM_863225.1| PREDICTED: Canis familiaris similar to HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1, transcript variant 3 (LOC475010), mRNA Length = 1023 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 320 tccagttattcaatggttctgggaaattgt 349 |||||||||||| |||||||||||| |||| Sbjct: 91 tccagttattcagtggttctgggaagttgt 120
>ref|XM_849139.1| PREDICTED: Canis familiaris similar to HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1, transcript variant 2 (LOC475010), mRNA Length = 3382 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 320 tccagttattcaatggttctgggaaattgt 349 |||||||||||| |||||||||||| |||| Sbjct: 2450 tccagttattcagtggttctgggaagttgt 2479
>gb|AF537209.1| Rattus norvegicus SCYB11 mRNA, complete cds Length = 1054 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 446 atctgggccacaacggttccag 467 |||||||||||||||||||||| Sbjct: 101 atctgggccacaacggttccag 122
>gb|AY340181.1| Rattus norvegicus interferon-inducible T-cell a chemoattractant I-TAC mRNA, complete cds Length = 514 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 446 atctgggccacaacggttccag 467 |||||||||||||||||||||| Sbjct: 80 atctgggccacaacggttccag 101
>gb|BC034982.2| Homo sapiens HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1, mRNA (cDNA clone MGC:27112 IMAGE:4838835), complete cds Length = 4614 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 320 tccagttattcaatggttctgggaaattgt 349 |||||||||||| |||||||||||| |||| Sbjct: 2671 tccagttattcagtggttctgggaagttgt 2700
>gb|BC038119.1| Homo sapiens HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1, mRNA (cDNA clone IMAGE:5265597), containing frame-shift errors Length = 4745 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 320 tccagttattcaatggttctgggaaattgt 349 |||||||||||| |||||||||||| |||| Sbjct: 2866 tccagttattcagtggttctgggaagttgt 2895
>gb|BC041919.1| Homo sapiens HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1, mRNA (cDNA clone IMAGE:5300087), containing frame-shift errors Length = 2569 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 320 tccagttattcaatggttctgggaaattgt 349 |||||||||||| |||||||||||| |||| Sbjct: 687 tccagttattcagtggttctgggaagttgt 716
>emb|AL834202.1|HSM805587 Homo sapiens mRNA; cDNA DKFZp434M0621 (from clone DKFZp434M0621) Length = 2829 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 320 tccagttattcaatggttctgggaaattgt 349 |||||||||||| |||||||||||| |||| Sbjct: 944 tccagttattcagtggttctgggaagttgt 973
>gb|BC025227.1| Mus musculus HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1, mRNA (cDNA clone IMAGE:5026748), partial cds Length = 1551 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 320 tccagttattcaatggttctgggaaattgt 349 |||||||||||| |||||||||||| |||| Sbjct: 601 tccagttattcagtggttctgggaagttgt 630
>dbj|AK220383.1| Mus musculus mRNA for mKIAA1320 protein Length = 10256 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 320 tccagttattcaatggttctgggaaattgt 349 |||||||||||| |||||||||||| |||| Sbjct: 366 tccagttattcagtggttctgggaagttgt 395
>dbj|AK131207.1| Homo sapiens cDNA FLJ16076 fis, clone MESAN2005303, weakly similar to DNA BINDING PROTEIN URE-B1 (EC 6.3.2.-) Length = 3103 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 320 tccagttattcaatggttctgggaaattgt 349 |||||||||||| |||||||||||| |||| Sbjct: 2062 tccagttattcagtggttctgggaagttgt 2091
>dbj|AK156958.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830109M14 product:Hypothetical ankyrin-repeat/HECT domain, full insert sequence Length = 3662 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 320 tccagttattcaatggttctgggaaattgt 349 |||||||||||| |||||||||||| |||| Sbjct: 2618 tccagttattcagtggttctgggaagttgt 2647
>dbj|AB168269.1| Macaca fascicularis testis cDNA clone: QtsA-10844, similar to human HECT domain and ankyrin repeat containing, E3 ubiquitinprotein ligase 1 (HACE1), mRNA, RefSeq: NM_020771.2 Length = 2130 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 320 tccagttattcaatggttctgggaaattgt 349 |||||||||||| |||||||||||| |||| Sbjct: 1559 tccagttattcagtggttctgggaagttgt 1588
>dbj|AK042879.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730034A22 product:hypothetical Ankyrin-repeat/HECT domain (Ubiquitin-protein ligase) containing protein, full insert sequence Length = 3652 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 320 tccagttattcaatggttctgggaaattgt 349 |||||||||||| |||||||||||| |||| Sbjct: 2617 tccagttattcagtggttctgggaagttgt 2646
>dbj|AK029162.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732499N19 product:hypothetical HECT domain (Ubiquitin-protein ligase) containing protein, full insert sequence Length = 2604 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 320 tccagttattcaatggttctgggaaattgt 349 |||||||||||| |||||||||||| |||| Sbjct: 1496 tccagttattcagtggttctgggaagttgt 1525
>ref|NM_182952.2| Rattus norvegicus chemokine (C-X-C motif) ligand 11 (Cxcl11), mRNA Length = 1054 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 446 atctgggccacaacggttccag 467 |||||||||||||||||||||| Sbjct: 101 atctgggccacaacggttccag 122
>emb|BX005180.6| Mouse DNA sequence from clone RP23-414F9 on chromosome X, complete sequence Length = 148346 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 311 catagcttctccagttattcaa 332 |||||||||||||||||||||| Sbjct: 126393 catagcttctccagttattcaa 126414
>dbj|AB037741.1| Homo sapiens mRNA for KIAA1320 protein, partial cds Length = 5321 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 320 tccagttattcaatggttctgggaaattgt 349 |||||||||||| |||||||||||| |||| Sbjct: 3454 tccagttattcagtggttctgggaagttgt 3483
>ref|XM_329545.1| Neurospora crassa OR74A related to TOM1 protein [MIPS] (NCU08501.1) partial mRNA Length = 12198 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 87 gtcactgaggagaacaagcatgaatatgt 115 ||||| ||||||||||||||||| ||||| Sbjct: 11665 gtcacggaggagaacaagcatgagtatgt 11693
>ref|XM_958337.1| Neurospora crassa OR74A related to TOM1 protein [MIPS] (NCU08501.1) partial mRNA Length = 12198 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 87 gtcactgaggagaacaagcatgaatatgt 115 ||||| ||||||||||||||||| ||||| Sbjct: 11665 gtcacggaggagaacaagcatgagtatgt 11693
>gb|U53149.2| Caenorhabditis elegans cosmid C24B5, complete sequence Length = 29671 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 346 ttgtccaaggtttcagcaagg 366 ||||||||||||||||||||| Sbjct: 17843 ttgtccaaggtttcagcaagg 17823
>gb|AC096310.9| Rattus norvegicus 1 BAC CH230-121B19 (Children's Hospital Oakland Research Institute) complete sequence Length = 218258 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 357 ttcagcaaggaggacaaagct 377 ||||||||||||||||||||| Sbjct: 204625 ttcagcaaggaggacaaagct 204605
>emb|BX842594.1| Neurospora crassa DNA linkage group II BAC clone B18P7 Length = 95637 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 87 gtcactgaggagaacaagcatgaatatgt 115 ||||| ||||||||||||||||| ||||| Sbjct: 40697 gtcacggaggagaacaagcatgagtatgt 40725
>emb|AL356834.1|NCB11B22 Neurospora crassa DNA linkage group II BAC clone B11B22 Length = 73803 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 87 gtcactgaggagaacaagcatgaatatgt 115 ||||| ||||||||||||||||| ||||| Sbjct: 3343 gtcacggaggagaacaagcatgagtatgt 3315
>emb|CR450788.7| Zebrafish DNA sequence from clone DKEY-15P23 in linkage group 12, complete sequence Length = 115480 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 488 caccaaccatcttccctctgctca 511 ||||||||||||| |||||||||| Sbjct: 83185 caccaaccatctttcctctgctca 83162
>ref|XM_447326.1| Candida glabrata CBS138 hypothetical protein (CAGL0I01672g) partial mRNA Length = 2577 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 331 aatggttctgggaaattgtccaag 354 |||||||||||||||||| ||||| Sbjct: 2309 aatggttctgggaaattgcccaag 2332
>emb|AL451085.20| Human DNA sequence from clone RP11-307C12 on chromosome 1 Contains the PMVK gene for phosphomevalonate kinase, the PBXIP1 gene for pre-B-cell leukemia transcription factor interacting protein 1, the gene for pygopus 2 (PYGO2), the SHC1 gene for SHC (Src homology 2 domain containing) transforming protein 1, the CKS1B gene for CDC28 protein kinase regulatory subunit 1B, the gene for FAD-synthetase (PP591), the LENEP gene for lens epithelial protein, the ZFP67 gene for zinc finger protein 67 homolog (mouse), the gene for a novel protein (FLJ32934), a novel gene, the gene for a novel protein (FLJ32785) the 5' end of the ADAM15 gene for a disintegrin and metalloproteinase domain 15 (metargidin), and two CpG islands, complete sequence Length = 182166 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 489 accaaccatcttccctctgc 508 |||||||||||||||||||| Sbjct: 79334 accaaccatcttccctctgc 79353
>emb|AL356454.15| Human DNA sequence from clone RP11-458J24 on chromosome 6, complete sequence Length = 174333 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 349 tccaaggtttcagcaaggaggaca 372 |||||||||| ||||||||||||| Sbjct: 81515 tccaaggttttagcaaggaggaca 81538
>gb|AC114461.6| Rattus norvegicus 1 BAC CH230-14J24 (Children's Hospital Oakland Research Institute) complete sequence Length = 238852 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 ccctctgctcatacttgctt 520 |||||||||||||||||||| Sbjct: 56258 ccctctgctcatacttgctt 56239
>emb|CR380955.1| Candida glabrata strain CBS138 chromosome I complete sequence Length = 1089401 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 331 aatggttctgggaaattgtccaag 354 |||||||||||||||||| ||||| Sbjct: 141055 aatggttctgggaaattgcccaag 141078
>gb|AC158749.5| Mus musculus chromosome 7, clone RP23-285C18, complete sequence Length = 237364 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 agttgattcctggagggcgt 77 |||||||||||||||||||| Sbjct: 213736 agttgattcctggagggcgt 213755
>gb|AC155255.3| Mus musculus BAC clone RP24-143P3 from chromosome 12, complete sequence Length = 201217 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 aggtacctctggagggtttc 428 |||||||||||||||||||| Sbjct: 3209 aggtacctctggagggtttc 3228
>gb|AC023844.6| Homo sapiens chromosome 15, clone RP11-427O16, complete sequence Length = 188788 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 317 ttctccagttattcaatggttctg 340 |||||||||||| ||||||||||| Sbjct: 101560 ttctccagttatccaatggttctg 101537
>emb|BX510369.6| Zebrafish DNA sequence from clone CH211-126I22 in linkage group 10, complete sequence Length = 168142 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 cctcagattaatgctttcatggaa 179 ||||||||| |||||||||||||| Sbjct: 139608 cctcagatttatgctttcatggaa 139585
>dbj|AK080297.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630040D01 product:unclassifiable, full insert sequence Length = 2021 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 agttgattcctggagggcgt 77 |||||||||||||||||||| Sbjct: 864 agttgattcctggagggcgt 845
>dbj|AK049415.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length enriched library, clone:C430005K08 product:unclassifiable, full insert sequence Length = 3011 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 agttgattcctggagggcgt 77 |||||||||||||||||||| Sbjct: 1852 agttgattcctggagggcgt 1833
>ref|NM_067883.3| Caenorhabditis elegans Y67D8C.5 (Y67D8C.5) mRNA, complete cds Length = 12998 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 505 ctgctcatacttgctttaaccaactgga 532 |||||||||||||||| || |||||||| Sbjct: 12419 ctgctcatacttgcttcaatcaactgga 12446
>gb|AC159987.5| Mus musculus 10 BAC RP23-475N14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 172772 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 tgctttcatggaaggattta 186 |||||||||||||||||||| Sbjct: 33771 tgctttcatggaaggattta 33790
>gb|AC021677.4|AC021677 Homo sapiens chromosome 15, clone RP11-62D2, complete sequence Length = 177762 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 317 ttctccagttattcaatggttctg 340 |||||||||||| ||||||||||| Sbjct: 89294 ttctccagttatccaatggttctg 89271
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.7 Identities = 35/40 (87%) Strand = Plus / Plus Query: 333 tggttctgggaaattgtccaaggtttcagcaaggaggaca 372 |||||||||||| | || | ||||||||||||||||||| Sbjct: 3978684 tggttctgggaagtagttaatggtttcagcaaggaggaca 3978723 Score = 40.1 bits (20), Expect = 7.7 Identities = 38/44 (86%) Strand = Plus / Plus Query: 141 accaccgcaattagacctcagattaatgctttcatggaaggatt 184 ||||| |||||| | ||||| |||||||||||| | |||||||| Sbjct: 3978411 accacagcaattcgccctcaaattaatgctttccttgaaggatt 3978454
>gb|AC155311.2| Mus musculus BAC clone RP23-407F7 from chromosome 12, complete sequence Length = 166104 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 aggtacctctggagggtttc 428 |||||||||||||||||||| Sbjct: 18056 aggtacctctggagggtttc 18037
>ref|XM_342160.2| PREDICTED: Rattus norvegicus HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1 (predicted) (Hace1_predicted), mRNA Length = 3378 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 tccagttattcaatggttctggga 343 |||||||||||| ||||||||||| Sbjct: 3078 tccagttattcagtggttctggga 3101
>dbj|AP005590.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0574F11 Length = 159891 Score = 40.1 bits (20), Expect = 7.7 Identities = 35/40 (87%) Strand = Plus / Plus Query: 333 tggttctgggaaattgtccaaggtttcagcaaggaggaca 372 |||||||||||| | || | ||||||||||||||||||| Sbjct: 110196 tggttctgggaagtagttaatggtttcagcaaggaggaca 110235 Score = 40.1 bits (20), Expect = 7.7 Identities = 38/44 (86%) Strand = Plus / Plus Query: 141 accaccgcaattagacctcagattaatgctttcatggaaggatt 184 ||||| |||||| | ||||| |||||||||||| | |||||||| Sbjct: 109923 accacagcaattcgccctcaaattaatgctttccttgaaggatt 109966
>gb|AC156271.5| Mus musculus 10 BAC RP24-317L8 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 191073 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 tgctttcatggaaggattta 186 |||||||||||||||||||| Sbjct: 89136 tgctttcatggaaggattta 89117
>emb|AL109759.4|CNS018OW Human chromosome 14 DNA sequence BAC R-898B23 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 201794 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 ggaaattgtccaaggtttca 360 |||||||||||||||||||| Sbjct: 62025 ggaaattgtccaaggtttca 62044
>gb|AC102099.14| Mus musculus chromosome 5, clone RP23-52A2, complete sequence Length = 235239 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 ttcaatggttctgggaaatt 347 |||||||||||||||||||| Sbjct: 194238 ttcaatggttctgggaaatt 194257
>emb|AL840632.7| Mouse DNA sequence from clone RP23-415B4 on chromosome X, complete sequence Length = 131616 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 gggtcactgaggagaacaag 104 |||||||||||||||||||| Sbjct: 34894 gggtcactgaggagaacaag 34913 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,572,784 Number of Sequences: 3902068 Number of extensions: 4572784 Number of successful extensions: 83672 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83475 Number of HSP's gapped (non-prelim): 190 length of query: 567 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 544 effective length of database: 17,143,297,704 effective search space: 9325953950976 effective search space used: 9325953950976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)