>gb|AY090536.1| Deschampsia antarctica unknown cold induced protein mRNA, partial
           cds; nuclear gene for plastid product
          Length = 424

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 178/220 (80%), Gaps = 11/220 (5%)
 Strand = Plus / Plus

                                                                       
Query: 140 cggtcatcaaacagtcgcaagaacccgaaagtgccaccactgaaaaatctagcaagaagt 199
           |||||||||||| ||||||||||||||| ||| |  || ||||||||||| || || |||
Sbjct: 113 cggtcatcaaaccgtcgcaagaacccgagagtactccctctgaaaaatctggccagcagt 172

                                                                       
Query: 200 ctcaataagtttacatccccagaaatttagttagtacgagtttttgatggaagcaaacgt 259
           ||||||||| || | |||| |||||||| || |||||  |  ||| | |||| |||| ||
Sbjct: 173 ctcaataag-ttgcttcccaagaaattttgtcagtacaggcctttaaaggaaccaaatgt 231

                                                                       
Query: 260 tgcttggttgggcctgccacggggagctgctgggaaaggcagcagagtgattgacaagga 319
           |||||  || ||||||||| ||||||||||| || ||||||||||      ||| ||| |
Sbjct: 232 tgcttacttaggcctgccatggggagctgctagggaaggcagcag------tgataagaa 285

                                                   
Query: 320 aaataagatggcctgttcttctgttgttgtagcatatttt 359
           ||||||    || |||||||||||||||||||||||||||
Sbjct: 286 aaataa----gcatgttcttctgttgttgtagcatatttt 321



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 458 atattacaattttgcggaaaatctgctt 485
           ||||| ||||||||| ||||||||||||
Sbjct: 395 atattgcaattttgcagaaaatctgctt 422



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                          
Query: 23 atctggagagggaacagaagctgaaagcagag 54
          |||||||||||||||||| |||| || |||||
Sbjct: 2  atctggagagggaacagacgctggaatcagag 33

>gb|AY730517.1| Uncultured Bacteroidetes bacterium clone BSp2P12-54 16S ribosomal
           RNA gene, partial sequence
          Length = 530

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 469 ttgcggaaaatctgctttcaca 490
           ||||||||||||||||||||||
Sbjct: 58  ttgcggaaaatctgctttcaca 37

>ref|XM_387398.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07222.1)
            partial mRNA
          Length = 4839

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 184  aaatctagcaagaagtctcaataagt 209
            ||||||||||||||||||||| ||||
Sbjct: 1006 aaatctagcaagaagtctcaagaagt 1031

>gb|AF534435.1| Uncultured bacterium clone TLM11/TLMdgge04 16S ribosomal RNA gene,
           partial sequence
          Length = 1444

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 469 ttgcggaaaatctgctttcaca 490
           ||||||||||||||||||||||
Sbjct: 994 ttgcggaaaatctgctttcaca 973

>emb|AL606962.22| Mouse DNA sequence from clone RP23-29H22 on chromosome 4, complete
             sequence
          Length = 223854

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 315   aaggaaaataagatggcctgtt 336
             ||||||||||||||||||||||
Sbjct: 37136 aaggaaaataagatggcctgtt 37157

>emb|CT009509.7| Mouse DNA sequence from clone RP23-140C10 on chromosome 13, complete
              sequence
          Length = 218144

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 181    gaaaaatctagcaagaagtctcaat 205
              ||||||||||||||||| |||||||
Sbjct: 170211 gaaaaatctagcaagaactctcaat 170235

>emb|AL360089.13| Human DNA sequence from clone RP11-284P20 on chromosome 9 Contains the
             3' end of a novel gene, a pescadillo homolog 1, containing
             BRCT domain (zebrafish) (PES1) pseudogene, a novel gene
             and a ribosomal protein L3 (RPL3) pseudogene, complete
             sequence
          Length = 129263

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 35    aacagaagctgaaagcagagg 55
             |||||||||||||||||||||
Sbjct: 70581 aacagaagctgaaagcagagg 70561

>ref|XM_226563.3| PREDICTED: Rattus norvegicus similar to TRIM9-like protein TNL
            (LOC307938), mRNA
          Length = 2874

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 27   ggagagggaacagaagctgaa 47
            |||||||||||||||||||||
Sbjct: 1764 ggagagggaacagaagctgaa 1784

>gb|AC102304.6| Mus musculus chromosome 7, clone RP24-403P14, complete sequence
          Length = 153206

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 181   gaaaaatctagcaagaagtctcaat 205
             |||||||||| ||||||||||||||
Sbjct: 78498 gaaaaatctaccaagaagtctcaat 78474

>gb|AC151333.2| Xenopus tropicalis clone ISB-321J8, complete sequence
          Length = 87151

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 401   tgtagctggtttgttttgtc 420
             ||||||||||||||||||||
Sbjct: 61647 tgtagctggtttgttttgtc 61666

>gb|AC102490.7| Mus musculus chromosome 1, clone RP24-512M8, complete sequence
          Length = 133883

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 33    ggaacagaagctgaaagcagaggcggta 60
             |||||||||||||||||||  |||||||
Sbjct: 98019 ggaacagaagctgaaagcatgggcggta 97992

>gb|AC138676.9| Mus musculus chromosome 3, clone RP23-381I16, complete sequence
          Length = 204781

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 33     ggaacagaagctgaaagcagaggc 56
              |||||||||||||| |||||||||
Sbjct: 153200 ggaacagaagctgagagcagaggc 153223

>gb|AC159139.9| Mus musculus 10 BAC RP24-370M23 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 185202

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 310    ttgacaaggaaaataagatg 329
              ||||||||||||||||||||
Sbjct: 151165 ttgacaaggaaaataagatg 151184

>ref|XM_766266.1| Giardia lamblia ATCC 50803 ABC transporter (GLP_38_64512_71054)
            partial mRNA
          Length = 6543

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 350  agcatatttttgacttcatg 369
            ||||||||||||||||||||
Sbjct: 1439 agcatatttttgacttcatg 1458

>gb|AC163215.4| Mus musculus chromosome 3, clone RP24-61G19, complete sequence
          Length = 184123

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 33    ggaacagaagctgaaagcagaggc 56
             |||||||||||||| |||||||||
Sbjct: 41079 ggaacagaagctgagagcagaggc 41102

>emb|AL353803.23| Human DNA sequence from clone RP11-65J3 on chromosome 9 Contains three
             novel genes, the 5' end of a novel gene, a novel
             pseudogene and seven CpG islands, complete sequence
          Length = 165696

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 281   gggagctgctgggaaaggca 300
             ||||||||||||||||||||
Sbjct: 67151 gggagctgctgggaaaggca 67132

>gb|AC004106.1| Homo sapiens Xp22 BAC GSHB-45N23 (Genome Systems Human BAC library)
              complete sequence
          Length = 190482

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 193    aagaagtctcaataagttta 212
              ||||||||||||||||||||
Sbjct: 135381 aagaagtctcaataagttta 135362

>gb|AC091205.3| Drosophila melanogaster 3L BAC RP98-22N9 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 170836

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 474   gaaaatctgctttcacatat 493
             ||||||||||||||||||||
Sbjct: 20918 gaaaatctgctttcacatat 20899

>gb|AC010109.6| Drosophila melanogaster 3L BAC RP98-9B4 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 167675

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 474   gaaaatctgctttcacatat 493
             ||||||||||||||||||||
Sbjct: 67426 gaaaatctgctttcacatat 67407

>gb|AC117521.2| Homo sapiens chromosome 5 clone RP11-1015H3, complete sequence
          Length = 171405

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 156    gcaagaacccgaaagtgcca 175
              ||||||||||||||||||||
Sbjct: 103841 gcaagaacccgaaagtgcca 103822

>gb|AC097533.2| Homo sapiens BAC clone RP11-770K15 from 4, complete sequence
          Length = 174696

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     ctggagagggaacagaagct 44
              ||||||||||||||||||||
Sbjct: 125647 ctggagagggaacagaagct 125666

>gb|AC010448.7| Homo sapiens chromosome 5 clone CTD-2237D2, complete sequence
          Length = 140090

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   gcaagaacccgaaagtgcca 175
             ||||||||||||||||||||
Sbjct: 88311 gcaagaacccgaaagtgcca 88330

>gb|AC125680.4| Rattus norvegicus X BAC CH230-10I21 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 139727

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 173  ccaccactgaaaaatctagcaaga 196
            ||||||||||||||| ||||||||
Sbjct: 7987 ccaccactgaaaaatgtagcaaga 8010

>gb|AC103916.5| Homo sapiens BAC clone RP11-614N24 from 2, complete sequence
          Length = 82711

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   aagaagtctcaataagttta 212
             ||||||||||||||||||||
Sbjct: 79916 aagaagtctcaataagttta 79935

>gb|AC010283.5|AC010283 Homo sapiens chromosome 5 clone CTC-555J2, complete sequence
          Length = 157896

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 156    gcaagaacccgaaagtgcca 175
              ||||||||||||||||||||
Sbjct: 108907 gcaagaacccgaaagtgcca 108926

>emb|AL596139.1|CNS07EGR BAC A of library A from Tetraodon nigroviridis, T-cell receptor alpha
             delta locus (germline)
          Length = 74861

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   cacggggagctgctgggaaa 296
             ||||||||||||||||||||
Sbjct: 45560 cacggggagctgctgggaaa 45579

>gb|AC148095.5| Mus musculus chromosome 3, clone RP23-36C9, complete sequence
          Length = 194212

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 33     ggaacagaagctgaaagcagaggc 56
              |||||||||||||| |||||||||
Sbjct: 174462 ggaacagaagctgagagcagaggc 174485

>gb|AE003478.3| Drosophila melanogaster chromosome 3L, section 12 of 83 of the complete
              sequence
          Length = 317354

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 474    gaaaatctgctttcacatat 493
              ||||||||||||||||||||
Sbjct: 190745 gaaaatctgctttcacatat 190764

>emb|AL954769.9| Zebrafish DNA sequence from clone CH211-262A21 in linkage group 7,
             complete sequence
          Length = 145555

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 475   aaaatctgctttcacatatc 494
             ||||||||||||||||||||
Sbjct: 41347 aaaatctgctttcacatatc 41328

>gb|AC004658.1|AC004658 Drosophila melanogaster DNA sequence (P1s DS00079 (D250) and DS08435
             (D258)), complete sequence
          Length = 94718

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 474   gaaaatctgctttcacatat 493
             ||||||||||||||||||||
Sbjct: 29022 gaaaatctgctttcacatat 29003

>emb|AL773567.16| Mouse DNA sequence from clone RP23-204P1 on chromosome 4, complete
              sequence
          Length = 189970

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 282    ggagctgctgggaaaggcag 301
              ||||||||||||||||||||
Sbjct: 152554 ggagctgctgggaaaggcag 152535

>emb|AL132633.2|CNS01DT3 Human chromosome 14 DNA sequence BAC C-2216L14 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 120571

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 336   tcttctgttgttgtagcata 355
             ||||||||||||||||||||
Sbjct: 59021 tcttctgttgttgtagcata 59040

>emb|AL772249.6| Mouse DNA sequence from clone RP23-430H1 on chromosome 2, complete
            sequence
          Length = 204907

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 202  caataagtttacatccccag 221
            ||||||||||||||||||||
Sbjct: 7341 caataagtttacatccccag 7360

>dbj|AP000346.1| Homo sapiens genomic DNA, chromosome 22q11.2, clone KB1572G7
          Length = 151600

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 281   gggagctgctgggaaaggca 300
             ||||||||||||||||||||
Sbjct: 40148 gggagctgctgggaaaggca 40167

>dbj|AP000345.1| Homo sapiens genomic DNA, chromosome 22q11.2, clone KB208E9
          Length = 113255

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 281   gggagctgctgggaaaggca 300
             ||||||||||||||||||||
Sbjct: 77563 gggagctgctgggaaaggca 77582


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,668,236
Number of Sequences: 3902068
Number of extensions: 4668236
Number of successful extensions: 80189
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80109
Number of HSP's gapped (non-prelim): 79
length of query: 505
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 483
effective length of database: 17,147,199,772
effective search space: 8282097489876
effective search space used: 8282097489876
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)