ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags17k22 |
|---|---|
| Clone Library Name | barley_pub |
>ERG19_HUMAN (P53602) Diphosphomevalonate decarboxylase (EC 4.1.1.33)| (Mevalonate pyrophosphate decarboxylase) (Mevalonate (diphospho)decarboxylase) Length = 400 Score = 201 bits (511), Expect = 1e-51 Identities = 98/178 (55%), Positives = 128/178 (71%) Frame = +2 Query: 92 VHIASYNNFPTXXXXXXXXXXXXCLVFTLGKLMNVNEDYGELSSIARQGSGSACRSIYGG 271 VH+AS NNFPT CL +TL ++ V D LS +AR+GSGSACRS+YGG Sbjct: 110 VHVASVNNFPTAAGLASSAAGYACLAYTLARVYGVESD---LSEVARRGSGSACRSLYGG 166 Query: 272 FVKWCMGKNDDGRDSMAVQLVDETHWDDLVIIIAVVSSKQKETSSTSGMRDTVETSPLLQ 451 FV+W MG+ DG+DS+A Q+ E+HW +L ++I VVS+++K T ST GMR +VETSPLL+ Sbjct: 167 FVEWQMGEQADGKDSIARQVAPESHWPELRVLILVVSAEKKLTGSTVGMRASVETSPLLR 226 Query: 452 YRAQTVVPSRILKMEDAIKNRDFESFARLTCADSNQFHAVCLDTSPPIFYMNDTSHRI 625 +RA++VVP+R+ +M I+ RDF SFA+LT DSNQFHA CLDT PPI Y+N S RI Sbjct: 227 FRAESVVPARMAEMARCIRERDFPSFAQLTMKDSNQFHATCLDTFPPISYLNAISWRI 284
>ERG19_RAT (Q62967) Diphosphomevalonate decarboxylase (EC 4.1.1.33)| (Mevalonate pyrophosphate decarboxylase) (Mevalonate (diphospho)decarboxylase) Length = 401 Score = 197 bits (502), Expect = 2e-50 Identities = 94/178 (52%), Positives = 127/178 (71%) Frame = +2 Query: 92 VHIASYNNFPTXXXXXXXXXXXXCLVFTLGKLMNVNEDYGELSSIARQGSGSACRSIYGG 271 VH+AS NNFPT CL +TL ++ V G+LS +AR+GSGSACRS+YGG Sbjct: 111 VHVASVNNFPTAAGLASSAAGYACLAYTLARVYGVE---GDLSEVARRGSGSACRSLYGG 167 Query: 272 FVKWCMGKNDDGRDSMAVQLVDETHWDDLVIIIAVVSSKQKETSSTSGMRDTVETSPLLQ 451 FV+W MG+ DG+DS+A Q+ E HW L ++I VVS+++K T ST GM+ +V TS LL+ Sbjct: 168 FVEWQMGEQADGKDSIARQIAPEWHWPQLRVLILVVSAEKKPTGSTVGMQTSVATSTLLK 227 Query: 452 YRAQTVVPSRILKMEDAIKNRDFESFARLTCADSNQFHAVCLDTSPPIFYMNDTSHRI 625 +RA+++VP R+ +M I+ +DF++FA+LT DSNQFHA CLDT PPI Y+NDTS RI Sbjct: 228 FRAESIVPERMKEMTRCIQEQDFQAFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRI 285
>ERG19_MOUSE (Q99JF5) Diphosphomevalonate decarboxylase (EC 4.1.1.33)| (Mevalonate pyrophosphate decarboxylase) (Mevalonate (diphospho)decarboxylase) Length = 401 Score = 196 bits (498), Expect = 5e-50 Identities = 95/178 (53%), Positives = 125/178 (70%) Frame = +2 Query: 92 VHIASYNNFPTXXXXXXXXXXXXCLVFTLGKLMNVNEDYGELSSIARQGSGSACRSIYGG 271 VH+AS NNFPT CL +TL ++ V G+LS +AR+GSGSACRS+YGG Sbjct: 111 VHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGVE---GDLSEVARRGSGSACRSLYGG 167 Query: 272 FVKWCMGKNDDGRDSMAVQLVDETHWDDLVIIIAVVSSKQKETSSTSGMRDTVETSPLLQ 451 FV+W MG+ DG+DS+A Q+ E HW L I+I VVS+ +K+T ST GM+ +VETS LL+ Sbjct: 168 FVEWQMGEQADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLK 227 Query: 452 YRAQTVVPSRILKMEDAIKNRDFESFARLTCADSNQFHAVCLDTSPPIFYMNDTSHRI 625 +RA++ VP R+ +M I+ +DF+ F +LT DSNQFHA CLDT PPI Y+NDTS RI Sbjct: 228 FRAESGVPERMKEMTRCIQEQDFQGFGQLTMKDSNQFHATCLDTFPPISYLNDTSRRI 285
>ERG19_YEAST (P32377) Diphosphomevalonate decarboxylase (EC 4.1.1.33)| (Mevalonate pyrophosphate decarboxylase) (Mevalonate-5-diphosphate decarboxylase) (MDD) Length = 396 Score = 179 bits (455), Expect = 5e-45 Identities = 90/178 (50%), Positives = 113/178 (63%) Frame = +2 Query: 92 VHIASYNNFPTXXXXXXXXXXXXCLVFTLGKLMNVNEDYGELSSIARQGSGSACRSIYGG 271 +HI S NNFPT LV + KL + + E+S IAR+GSGSACRS++GG Sbjct: 104 LHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSACRSLFGG 163 Query: 272 FVKWCMGKNDDGRDSMAVQLVDETHWDDLVIIIAVVSSKQKETSSTSGMRDTVETSPLLQ 451 +V W MGK +DG DSMAVQ+ D + W + + VVS +K+ SST GM+ TV TS L + Sbjct: 164 YVAWEMGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIKKDVSSTQGMQLTVATSELFK 223 Query: 452 YRAQTVVPSRILKMEDAIKNRDFESFARLTCADSNQFHAVCLDTSPPIFYMNDTSHRI 625 R + VVP R M AI +DF +FA+ T DSN FHA CLD+ PPIFYMNDTS RI Sbjct: 224 ERIEHVVPKRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRI 281
>TRC5_ECOLI (P27190) DNA primase traC (EC 2.7.7.-) (Replication primase)| Length = 1448 Score = 34.7 bits (78), Expect = 0.24 Identities = 17/43 (39%), Positives = 26/43 (60%) Frame = +2 Query: 491 MEDAIKNRDFESFARLTCADSNQFHAVCLDTSPPIFYMNDTSH 619 +EDA+++R E+ +T D QF+AV D P+F + D SH Sbjct: 561 LEDALRSRGLETVGSITGTDPEQFYAVAHDRLSPVFGI-DPSH 602
>DBP7_NEUCR (Q7S873) ATP-dependent RNA helicase dbp-7 (EC 3.6.1.-)| Length = 814 Score = 33.1 bits (74), Expect = 0.69 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 8/100 (8%) Frame = +2 Query: 317 MAVQLVDETHWDDLVIIIAVVSSKQKETSSTSGMRDTVETSPLLQYRAQTVVPSRI---- 484 M VQ + E +D V I A S +K+ + G +T ++P +A V P+++ Sbjct: 368 MNVQKLGEISLEDAVHITASKSDMEKDAET--GAVETAFSAPAQLKQAAIVTPAKLRLVT 425 Query: 485 ----LKMEDAIKNRDFESFARLTCADSNQFHAVCLDTSPP 592 LK A K ++ ++CADS +H L ++ P Sbjct: 426 LIALLKSTFARKGSVMKAIIFISCADSVDYHFELLKSTTP 465
>Y969_METJA (Q58379) Hypothetical protein MJ0969| Length = 270 Score = 32.7 bits (73), Expect = 0.90 Identities = 22/101 (21%), Positives = 44/101 (43%) Frame = +2 Query: 110 NNFPTXXXXXXXXXXXXCLVFTLGKLMNVNEDYGELSSIARQGSGSACRSIYGGFVKWCM 289 ++FP L L +++N+NE+Y E++ I+ G+ + +VK + Sbjct: 80 SDFPLGSGLGMSGGCALILAKKLNEMLNLNENYAEIAHISEVECGTGLGDVIAQYVKGFV 139 Query: 290 GKNDDGRDSMAVQLVDETHWDDLVIIIAVVSSKQKETSSTS 412 + G ++V + DD III + K+ + T+ Sbjct: 140 IRKTPGFPINVEKIVVD---DDYYIIIEIFGKKETKEIITN 177
>NOC3L_DROME (Q9VI82) Nucleolar complex protein 3 homolog (NOC3 protein homolog)| (NOC3-like protein) (Nucleolar complex-associated protein 3-like protein) Length = 822 Score = 30.8 bits (68), Expect = 3.4 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 9/94 (9%) Frame = +2 Query: 296 NDDGRDSMAVQLVDETHWDDLVIIIAVVSSKQKETSSTSGMRDTVETSPLLQYRAQTVVP 475 N+DG D M + D DDL ++ A +K+K + T+G D + + RA Sbjct: 81 NEDGDDEMLENVADMLDGDDLALLQA---NKRKRKAKTTGENDPDQGQSIGLERAYA--- 134 Query: 476 SRILKMEDA---------IKNRDFESFARLTCAD 550 S K +DA IK+RD + R T D Sbjct: 135 SDTKKEQDAQKIKLDLLPIKSRDGQIITRTTEVD 168
>ATG2_ASPFU (Q4WLK5) Autophagy-related protein 2| Length = 2160 Score = 30.4 bits (67), Expect = 4.5 Identities = 22/79 (27%), Positives = 39/79 (49%) Frame = +2 Query: 296 NDDGRDSMAVQLVDETHWDDLVIIIAVVSSKQKETSSTSGMRDTVETSPLLQYRAQTVVP 475 +DDG S+ V+L DDL+I+ S Q S +G++ S ++YR + Sbjct: 1416 DDDGTKSVDVELK-----DDLLILETCADSTQTLISIINGLQPPTPPSVAVKYRTE---- 1466 Query: 476 SRILKMEDAIKNRDFESFA 532 +L +ED + + ++FA Sbjct: 1467 --VLPIEDMLASFSGDAFA 1483
>YMB8_YEAST (Q03730) Hypothetical 43.7 kDa protein in OST6-PSP2 intergenic| region Length = 393 Score = 29.3 bits (64), Expect = 10.0 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -3 Query: 405 LLVSFCFELTTAMIITRSSQCVSSTSCTAILSLPSSFFPI 286 L FC TA ++T +S +S + ILS SSFF + Sbjct: 129 LSAEFCILWFTANLVTNASLAFTSVASQTILSTTSSFFTL 168
>OR9Q1_HUMAN (Q8NGQ5) Olfactory receptor 9Q1| Length = 310 Score = 29.3 bits (64), Expect = 10.0 Identities = 15/40 (37%), Positives = 24/40 (60%) Frame = -3 Query: 411 LVLLVSFCFELTTAMIITRSSQCVSSTSCTAILSLPSSFF 292 +V+LVS+ F + M I SQ + ++CT+ L+ S FF Sbjct: 212 VVILVSYLFIIVAIMGIPAGSQAKTFSTCTSHLTAVSLFF 251 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,134,221 Number of Sequences: 219361 Number of extensions: 1973636 Number of successful extensions: 5003 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4857 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5000 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5767334219 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
