ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags17j01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB164396.1| Hordeum vulgare HvMS mRNA for methionine synthas... 167 6e-39
2emb|AM039904.1| Hordeum vulgare mRNA for methionine synthase 1 e... 159 2e-36
3gb|BT016781.1| Zea mays clone Contig614 mRNA sequence 103 8e-20
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 103 8e-20
5dbj|AK067757.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 8e-20
6dbj|AK067726.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 8e-20
7gb|AY104793.1| Zea mays PCO079166 mRNA sequence 103 8e-20
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 103 8e-20
9emb|AL731889.5|CNS08C8T Oryza sativa chromosome 12, . BAC OJ1122... 103 8e-20
10emb|BX000561.2|CNS08CE7 Oryza sativa chromosome 12, . BAC OJ1014... 103 8e-20
11gb|BC034830.1| Mus musculus cDNA clone MGC:28753 IMAGE:4483004, ... 101 3e-19
12gb|BC032196.1| Mus musculus cDNA clone MGC:38244 IMAGE:5324059, ... 101 3e-19
13dbj|AB221011.1| Beta vulgaris BvMS1 mRNA for methionine synthase... 101 3e-19
14gb|AF466201.1| Sorghum bicolor clone SBTXS_0032H17 putative cyto... 96 2e-17
15emb|X83499.1|CRMETS C.roseus MetE mRNA for methionine synthase 90 1e-15
16gb|BT009353.1| Triticum aestivum clone wlm96.pk0018.c10:fis, ful... 88 5e-15
17dbj|AK099069.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 5e-15
18dbj|AK067958.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 5e-15
19dbj|AK065255.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 5e-15
20emb|BX072547.2|CNS09S4Q Oryza sativa chromosome 12, . Partial se... 88 5e-15
21emb|AM039905.1| Hordeum vulgare mRNA for methionine synthase 2 e... 88 5e-15
22gb|AF439723.1|AF439723 Zea mays methionine synthase mRNA, partia... 80 1e-12
23gb|AY109415.1| Zea mays CL598_2 mRNA sequence 78 4e-12
24gb|U84889.1|MCU84889 Mesembryanthemum crystallinum methionine sy... 78 4e-12
25emb|AJ718448.1| Nicotiana tabacum cDNA-AFLP-fragment BSTC1-13-19... 70 1e-09
26emb|AJ718890.1| Nicotiana tabacum cDNA-AFLP-fragment BSTC14-2-11... 64 7e-08
27emb|Z49150.1|CBKPMETGN C.blumei kinetoplast met gene for cobalam... 58 4e-06
28ref|NM_111249.3| Arabidopsis thaliana 5-methyltetrahydropteroylt... 54 6e-05
29ref|NM_180176.1| Arabidopsis thaliana 5-methyltetrahydropteroylt... 54 6e-05
30gb|AC009540.6|ATAC009540 Arabidopsis thaliana chromosome III BAC... 54 6e-05
31gb|AY150385.1| Arabidopsis thaliana putative methionine synthase... 54 6e-05
32gb|AY040010.1| Arabidopsis thaliana putative methionine synthase... 54 6e-05
33emb|AJ608674.1| Arabidopsis thaliana mRNA for cobalamin-independ... 54 6e-05
34emb|BX825589.1|CNS0A4R8 Arabidopsis thaliana Full-length cDNA Co... 54 6e-05
35gb|AY084559.1| Arabidopsis thaliana clone 111720 mRNA, complete ... 54 6e-05
36gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome 48 0.004
37ref|XM_746997.1| Aspergillus fumigatus Af293 5-methyltetrahydrop... 46 0.016
38gb|AC126009.22| Medicago truncatula clone mth2-15c20, complete s... 44 0.063
39gb|AC137822.30| Medicago truncatula clone mth2-31e20, complete s... 44 0.063
40dbj|AB226113.1| Aspergillus oryzae cDNA, contig sequence: AoEST2970 44 0.063
41dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 44 0.063
42gb|AF082893.1| Solanum tuberosum methionine synthase (MS) mRNA, ... 40 0.98
43ref|XM_550018.1| Oryza sativa (japonica cultivar-group), mRNA 38 3.9
44gb|AC186003.3| Pan troglodytes BAC clone CH251-72E16 from chromo... 38 3.9
45emb|AL357872.23| Human DNA sequence from clone RP11-308P9 on chr... 38 3.9
46gb|AC090324.7| Homo sapiens chromosome 18, clone RP11-693L9, com... 38 3.9
47gb|AC104125.3| Homo sapiens chromosome 5 clone RP11-432G16, comp... 38 3.9
48gb|AC020900.5| Homo sapiens chromosome 5 clone CTC-506B8, comple... 38 3.9
49ref|XM_939268.1| PREDICTED: Homo sapiens similar to Nonhistone c... 38 3.9
50ref|XM_371117.3| PREDICTED: Homo sapiens similar to Nonhistone c... 38 3.9
51gb|AC182475.2| Pan troglodytes BAC clone CH251-196J4 from chromo... 38 3.9
52dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 3.9
53dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome 38 3.9
54dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic D... 38 3.9
55gb|AC158992.2| Mus musculus BAC clone RP24-396L14 from chromosom... 38 3.9 
>dbj|AB164396.1| Hordeum vulgare HvMS mRNA for methionine synthase, complete cds
          Length = 2558

 Score =  167 bits (84), Expect = 6e-39
 Identities = 88/90 (97%)
 Strand = Plus / Plus

                                                                        
Query: 1    tacaccaatgccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgac 60
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1395 tacaccaatgccatcaaggaggagatcagcaaggttgtcaagatccaagaagagcttgac 1454

                                          
Query: 61   attgntgtgctcgtgcacggagagcctgag 90
            |||| |||||||||||||||||||||||||
Sbjct: 1455 attgatgtgctcgtgcacggagagcctgag 1484
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>emb|AM039904.1| Hordeum vulgare mRNA for methionine synthase 1 enzyme (ms1 gene)
          Length = 2642

 Score =  159 bits (80), Expect = 2e-36
 Identities = 87/90 (96%)
 Strand = Plus / Plus

                                                                        
Query: 1    tacaccaatgccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgac 60
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1440 tacaccaatgccatcaaggaggagatcagcaaggttgtcaagatccaagaagagcttgac 1499

                                          
Query: 61   attgntgtgctcgtgcacggagagcctgag 90
            || | |||||||||||||||||||||||||
Sbjct: 1500 atcgatgtgctcgtgcacggagagcctgag 1529
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>gb|BT016781.1| Zea mays clone Contig614 mRNA sequence
          Length = 1759

 Score =  103 bits (52), Expect = 8e-20
 Identities = 71/78 (91%)
 Strand = Plus / Plus

                                                                       
Query: 9   tgccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgt 68
           |||||||||||| || ||||||| |||||||||||||||||| ||||||||||||| |||
Sbjct: 501 tgccatcaaggaagaaatcagcaaggttgtcaagatccaagaggagcttgacattgatgt 560

                             
Query: 69  gctcgtgcacggagagcc 86
           ||| ||||| ||||||||
Sbjct: 561 gcttgtgcatggagagcc 578
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  103 bits (52), Expect = 8e-20
 Identities = 74/82 (90%)
 Strand = Plus / Plus

                                                                            
Query: 9        tgccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgt 68
                ||||||||||||||| ||||||| |||||| |||||||| |||||||||||||||| |||
Sbjct: 26694863 tgccatcaaggaggaaatcagcaaggttgttaagatccaggaagagcttgacattgatgt 26694922

                                      
Query: 69       gctcgtgcacggagagcctgag 90
                ||| || ||||| |||||||||
Sbjct: 26694923 gcttgttcacggcgagcctgag 26694944



 Score = 87.7 bits (44), Expect = 5e-15
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                            
Query: 9        tgccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgt 68
                ||||||||||||||| ||||||| |||||| |||||||| |||||||||||||| | |||
Sbjct: 26683039 tgccatcaaggaggaaatcagcaaggttgttaagatccaggaagagcttgacatcgatgt 26683098

                                      
Query: 69       gctcgtgcacggagagcctgag 90
                 || || ||||| |||||||||
Sbjct: 26683099 ccttgttcacggcgagcctgag 26683120
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>dbj|AK067757.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116H17, full
            insert sequence
          Length = 2627

 Score =  103 bits (52), Expect = 8e-20
 Identities = 74/82 (90%)
 Strand = Plus / Plus

                                                                        
Query: 9    tgccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgt 68
            ||||||||||||||| ||||||| |||||| |||||||| |||||||||||||||| |||
Sbjct: 1465 tgccatcaaggaggaaatcagcaaggttgttaagatccaggaagagcttgacattgatgt 1524

                                  
Query: 69   gctcgtgcacggagagcctgag 90
            ||| || ||||| |||||||||
Sbjct: 1525 gcttgttcacggcgagcctgag 1546
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>dbj|AK067726.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116O11, full
            insert sequence
          Length = 2783

 Score =  103 bits (52), Expect = 8e-20
 Identities = 74/82 (90%)
 Strand = Plus / Plus

                                                                        
Query: 9    tgccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgt 68
            ||||||||||||||| ||||||| |||||| |||||||| |||||||||||||||| |||
Sbjct: 1584 tgccatcaaggaggaaatcagcaaggttgttaagatccaggaagagcttgacattgatgt 1643

                                  
Query: 69   gctcgtgcacggagagcctgag 90
            ||| || ||||| |||||||||
Sbjct: 1644 gcttgttcacggcgagcctgag 1665
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>gb|AY104793.1| Zea mays PCO079166 mRNA sequence
          Length = 2720

 Score =  103 bits (52), Expect = 8e-20
 Identities = 71/78 (91%)
 Strand = Plus / Plus

                                                                        
Query: 9    tgccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgt 68
            |||||||||||| || ||||||| |||||||||||||||||| ||||||||||||| |||
Sbjct: 1507 tgccatcaaggaagaaatcagcaaggttgtcaagatccaagaggagcttgacattgatgt 1566

                              
Query: 69   gctcgtgcacggagagcc 86
            ||| ||||| ||||||||
Sbjct: 1567 gcttgtgcatggagagcc 1584
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  103 bits (52), Expect = 8e-20
 Identities = 74/82 (90%)
 Strand = Plus / Plus

                                                                            
Query: 9        tgccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgt 68
                ||||||||||||||| ||||||| |||||| |||||||| |||||||||||||||| |||
Sbjct: 26623032 tgccatcaaggaggaaatcagcaaggttgttaagatccaggaagagcttgacattgatgt 26623091

                                      
Query: 69       gctcgtgcacggagagcctgag 90
                ||| || ||||| |||||||||
Sbjct: 26623092 gcttgttcacggcgagcctgag 26623113



 Score = 87.7 bits (44), Expect = 5e-15
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                            
Query: 9        tgccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgt 68
                ||||||||||||||| ||||||| |||||| |||||||| |||||||||||||| | |||
Sbjct: 26611208 tgccatcaaggaggaaatcagcaaggttgttaagatccaggaagagcttgacatcgatgt 26611267

                                      
Query: 69       gctcgtgcacggagagcctgag 90
                 || || ||||| |||||||||
Sbjct: 26611268 ccttgttcacggcgagcctgag 26611289
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>emb|AL731889.5|CNS08C8T Oryza sativa chromosome 12, . BAC OJ1122_G07 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 83015

 Score =  103 bits (52), Expect = 8e-20
 Identities = 74/82 (90%)
 Strand = Plus / Minus

                                                                         
Query: 9     tgccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgt 68
             ||||||||||||||| ||||||| |||||| |||||||| |||||||||||||||| |||
Sbjct: 76264 tgccatcaaggaggaaatcagcaaggttgttaagatccaggaagagcttgacattgatgt 76205

                                   
Query: 69    gctcgtgcacggagagcctgag 90
             ||| || ||||| |||||||||
Sbjct: 76204 gcttgttcacggcgagcctgag 76183
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>emb|BX000561.2|CNS08CE7 Oryza sativa chromosome 12, . BAC OJ1014_F06 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 104849

 Score =  103 bits (52), Expect = 8e-20
 Identities = 74/82 (90%)
 Strand = Plus / Minus

                                                                          
Query: 9      tgccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgt 68
              ||||||||||||||| ||||||| |||||| |||||||| |||||||||||||||| |||
Sbjct: 104115 tgccatcaaggaggaaatcagcaaggttgttaagatccaggaagagcttgacattgatgt 104056

                                    
Query: 69     gctcgtgcacggagagcctgag 90
              ||| || ||||| |||||||||
Sbjct: 104055 gcttgttcacggcgagcctgag 104034
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>gb|BC034830.1| Mus musculus cDNA clone MGC:28753 IMAGE:4483004, complete cds
          Length = 2755

 Score =  101 bits (51), Expect = 3e-19
 Identities = 73/81 (90%)
 Strand = Plus / Plus

                                                                        
Query: 10   gccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgtg 69
            ||||||||||||||||||| || |||||| ||| |||||||||| |||||||||| ||| 
Sbjct: 1458 gccatcaaggaggagatcaacaaggttgtaaagctccaagaagaacttgacattgatgtt 1517

                                 
Query: 70   ctcgtgcacggagagcctgag 90
            ||||| |||||||||||||||
Sbjct: 1518 ctcgttcacggagagcctgag 1538
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>gb|BC032196.1| Mus musculus cDNA clone MGC:38244 IMAGE:5324059, complete cds
          Length = 2766

 Score =  101 bits (51), Expect = 3e-19
 Identities = 73/81 (90%)
 Strand = Plus / Plus

                                                                        
Query: 10   gccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgtg 69
            ||||||||||||||||||| || |||||| ||| |||||||||| |||||||||| ||| 
Sbjct: 1469 gccatcaaggaggagatcaacaaggttgtaaagctccaagaagaacttgacattgatgtt 1528

                                 
Query: 70   ctcgtgcacggagagcctgag 90
            ||||| |||||||||||||||
Sbjct: 1529 ctcgttcacggagagcctgag 1549
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>dbj|AB221011.1| Beta vulgaris BvMS1 mRNA for methionine synthase, complete cds
          Length = 2720

 Score =  101 bits (51), Expect = 3e-19
 Identities = 73/81 (90%)
 Strand = Plus / Plus

                                                                        
Query: 10   gccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgtg 69
            ||||||||||||||||||| || |||||| ||| |||||||||| |||||||||| ||| 
Sbjct: 1488 gccatcaaggaggagatcaacaaggttgtaaagctccaagaagaacttgacattgatgtt 1547

                                 
Query: 70   ctcgtgcacggagagcctgag 90
            ||||| |||||||||||||||
Sbjct: 1548 ctcgttcacggagagcctgag 1568
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>gb|AF466201.1| Sorghum bicolor clone SBTXS_0032H17 putative cytochrome P450-like
             protein, putative DNA-binding protein homolog,
             TATA-binding protein, hypothetical protein M3E9.200,
             3-glucanase, K-exchanger-like protein, small heat
             shock-like protein, methionine synthase protein, putative
             far-red impaired response protein, and putative vegetative
             storage protein genes, complete cds
          Length = 100773

 Score = 95.6 bits (48), Expect = 2e-17
 Identities = 70/78 (89%)
 Strand = Plus / Minus

                                                                         
Query: 9     tgccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgt 68
             |||||||||||| || || |||| |||||||||||||||||| ||||||||||||| |||
Sbjct: 74047 tgccatcaaggaagaaattagcaaggttgtcaagatccaagaggagcttgacattgatgt 73988

                               
Query: 69    gctcgtgcacggagagcc 86
             ||| ||||| ||||||||
Sbjct: 73987 gcttgtgcatggagagcc 73970
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>emb|X83499.1|CRMETS C.roseus MetE mRNA for methionine synthase
          Length = 2602

 Score = 89.7 bits (45), Expect = 1e-15
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                       
Query: 10   gccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgt 68
            |||||||||||||| ||||||| |||||||||| ||||||||||||||||||||| |||
Sbjct: 1446 gccatcaaggaggaaatcagcaaggttgtcaagctccaagaagagcttgacattgatgt 1504
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>gb|BT009353.1| Triticum aestivum clone wlm96.pk0018.c10:fis, full insert mRNA
            sequence
          Length = 2634

 Score = 87.7 bits (44), Expect = 5e-15
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                        
Query: 13   atcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgtgctc 72
            |||||||| || || |||| |||||||||||||||||| ||||||||||| | |||||||
Sbjct: 1476 atcaaggaagaaattagcaaggttgtcaagatccaagaggagcttgacatcgatgtgctc 1535

                              
Query: 73   gtgcacggagagcctgag 90
            || || ||||||||||||
Sbjct: 1536 gtccatggagagcctgag 1553
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>dbj|AK099069.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013163D13, full
            insert sequence
          Length = 2640

 Score = 87.7 bits (44), Expect = 5e-15
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                        
Query: 9    tgccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgt 68
            ||||||||||||||| ||||||| |||||| |||||||| |||||||||||||| | |||
Sbjct: 1465 tgccatcaaggaggaaatcagcaaggttgttaagatccaggaagagcttgacatcgatgt 1524

                                  
Query: 69   gctcgtgcacggagagcctgag 90
             || || ||||| |||||||||
Sbjct: 1525 ccttgttcacggcgagcctgag 1546
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>dbj|AK067958.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128E22, full
           insert sequence
          Length = 2058

 Score = 87.7 bits (44), Expect = 5e-15
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                       
Query: 9   tgccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgt 68
           ||||||||||||||| ||||||| |||||| |||||||| |||||||||||||| | |||
Sbjct: 832 tgccatcaaggaggaaatcagcaaggttgttaagatccaggaagagcttgacatcgatgt 891

                                 
Query: 69  gctcgtgcacggagagcctgag 90
            || || ||||| |||||||||
Sbjct: 892 ccttgttcacggcgagcctgag 913
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>dbj|AK065255.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J12, full
            insert sequence
          Length = 2668

 Score = 87.7 bits (44), Expect = 5e-15
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                        
Query: 9    tgccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgt 68
            ||||||||||||||| ||||||| |||||| |||||||| |||||||||||||| | |||
Sbjct: 1464 tgccatcaaggaggaaatcagcaaggttgttaagatccaggaagagcttgacatcgatgt 1523

                                  
Query: 69   gctcgtgcacggagagcctgag 90
             || || ||||| |||||||||
Sbjct: 1524 ccttgttcacggcgagcctgag 1545
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>emb|BX072547.2|CNS09S4Q Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0090N22
            of library OSJNBb from chromosome 12 of cultivar
            Nipponbare of ssp. japonica of Oryza sativa (rice),
            complete sequence
          Length = 8623

 Score = 87.7 bits (44), Expect = 5e-15
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                        
Query: 9    tgccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgt 68
            ||||||||||||||| ||||||| |||||| |||||||| |||||||||||||| | |||
Sbjct: 1623 tgccatcaaggaggaaatcagcaaggttgttaagatccaggaagagcttgacatcgatgt 1682

                                  
Query: 69   gctcgtgcacggagagcctgag 90
             || || ||||| |||||||||
Sbjct: 1683 ccttgttcacggcgagcctgag 1704
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>emb|AM039905.1| Hordeum vulgare mRNA for methionine synthase 2 enzyme (ms2 gene)
          Length = 2675

 Score = 87.7 bits (44), Expect = 5e-15
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                        
Query: 13   atcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgtgctc 72
            |||||||| || || |||| |||||||||||||||||| ||||||||||| | |||||||
Sbjct: 1485 atcaaggaagaaattagcaaggttgtcaagatccaagaggagcttgacatcgatgtgctc 1544

                              
Query: 73   gtgcacggagagcctgag 90
            || || ||||||||||||
Sbjct: 1545 gtccatggagagcctgag 1562
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>gb|AF439723.1|AF439723 Zea mays methionine synthase mRNA, partial cds
          Length = 2300

 Score = 79.8 bits (40), Expect = 1e-12
 Identities = 71/82 (86%)
 Strand = Plus / Plus

                                                                        
Query: 9    tgccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgt 68
            ||||||||||||||| |||| || ||| || ||| | ||||||||||||||||||| |||
Sbjct: 1398 tgccatcaaggaggaaatcaacaaggtcgttaagcttcaagaagagcttgacattgatgt 1457

                                  
Query: 69   gctcgtgcacggagagcctgag 90
            ||| ||||| || |||||||||
Sbjct: 1458 gcttgtgcatggcgagcctgag 1479
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>gb|AY109415.1| Zea mays CL598_2 mRNA sequence
          Length = 3017

 Score = 77.8 bits (39), Expect = 4e-12
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                        
Query: 9    tgccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgt 68
            ||||||||||||||| |||| || ||| || ||| | ||||||||||||||||||| |||
Sbjct: 1533 tgccatcaaggaggaaatcaacaaggtcgttaagcttcaagaagagcttgacattgatgt 1474

                                 
Query: 69   gctcgtgcacggagagcctga 89
            ||| ||||| || ||||||||
Sbjct: 1473 gcttgtgcatggcgagcctga 1453
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>gb|U84889.1|MCU84889 Mesembryanthemum crystallinum methionine synthase (MetE) mRNA,
            complete cds
          Length = 2734

 Score = 77.8 bits (39), Expect = 4e-12
 Identities = 70/81 (86%)
 Strand = Plus / Plus

                                                                        
Query: 10   gccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgtg 69
            ||||||||||| ||||| |||| |||||||||| |||| ||||| |||||||| | ||| 
Sbjct: 1516 gccatcaaggaagagattagcaaggttgtcaagctccaggaagaacttgacatcgatgtc 1575

                                 
Query: 70   ctcgtgcacggagagcctgag 90
            || || |||||||||||||||
Sbjct: 1576 cttgtacacggagagcctgag 1596
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>emb|AJ718448.1| Nicotiana tabacum cDNA-AFLP-fragment BSTC1-13-195, cultivar Bright
           Yellow 2
          Length = 142

 Score = 69.9 bits (35), Expect = 1e-09
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                       
Query: 10  gccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgtg 69
           |||||||||||||| ||||  | ||||||| |  ||||||||||||||||||||| ||| 
Sbjct: 141 gccatcaaggaggaaatcaagaaggttgtcgatctccaagaagagcttgacattgatgtc 82

                                
Query: 70  ctcgtgcacggagagcctgag 90
            | || |||||||||||||||
Sbjct: 81  ttggttcacggagagcctgag 61
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>emb|AJ718890.1| Nicotiana tabacum cDNA-AFLP-fragment BSTC14-2-119A, cultivar Bright
           Yellow 2
          Length = 132

 Score = 63.9 bits (32), Expect = 7e-08
 Identities = 69/81 (85%), Gaps = 1/81 (1%)
 Strand = Plus / Minus

                                                                       
Query: 10  gccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgtg 69
           |||||||||||||| ||||  | ||||||| |  ||||||||||||||||||||| ||| 
Sbjct: 131 gccatcaaggaggaaatcaagaaggttgtcgatctccaagaagagcttgacattgatgt- 73

                                
Query: 70  ctcgtgcacggagagcctgag 90
           || || |||||||| ||||||
Sbjct: 72  ctggttcacggagancctgag 52
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>emb|Z49150.1|CBKPMETGN C.blumei kinetoplast met gene for cobalamine-independent methionine
            synthase
          Length = 2795

 Score = 58.0 bits (29), Expect = 4e-06
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                
Query: 13   atcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattg 64
            |||||||||||||||| || |||||||||  | || ||||||||||||||||
Sbjct: 1577 atcaaggaggagatcaacaaggttgtcaaactgcaggaagagcttgacattg 1628
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>ref|NM_111249.3| Arabidopsis thaliana
            5-methyltetrahydropteroyltriglutamate-homocysteine
            S-methyltransferase AT3G03780 transcript variant
            AT3G03780.1 mRNA, complete cds
          Length = 2615

 Score = 54.0 bits (27), Expect = 6e-05
 Identities = 67/81 (82%)
 Strand = Plus / Plus

                                                                        
Query: 10   gccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgtg 69
            ||||||||||| |||||||  |  |||||  | |||||||| || |||||||||| ||| 
Sbjct: 1475 gccatcaaggaagagatcaagaaagttgttgacatccaagaggaccttgacattgatgtt 1534

                                 
Query: 70   ctcgtgcacggagagcctgag 90
            || || |||||||||||||||
Sbjct: 1535 cttgttcacggagagcctgag 1555
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>ref|NM_180176.1| Arabidopsis thaliana
            5-methyltetrahydropteroyltriglutamate-homocysteine
            S-methyltransferase AT3G03780 transcript variant
            AT3G03780.2 mRNA, complete cds
          Length = 2608

 Score = 54.0 bits (27), Expect = 6e-05
 Identities = 67/81 (82%)
 Strand = Plus / Plus

                                                                        
Query: 10   gccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgtg 69
            ||||||||||| |||||||  |  |||||  | |||||||| || |||||||||| ||| 
Sbjct: 1468 gccatcaaggaagagatcaagaaagttgttgacatccaagaggaccttgacattgatgtt 1527

                                 
Query: 70   ctcgtgcacggagagcctgag 90
            || || |||||||||||||||
Sbjct: 1528 cttgttcacggagagcctgag 1548
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>gb|AC009540.6|ATAC009540 Arabidopsis thaliana chromosome III BAC F20H23 genomic sequence,
             complete sequence
          Length = 101410

 Score = 54.0 bits (27), Expect = 6e-05
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                         
Query: 10    gccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgtg 69
             ||||||||||| |||||||  |  |||||  | |||||||| || |||||||||| ||| 
Sbjct: 57351 gccatcaaggaagagatcaagaaagttgttgacatccaagaggaccttgacattgatgtt 57292

                                  
Query: 70    ctcgtgcacggagagcctgag 90
             || || |||||||||||||||
Sbjct: 57291 cttgttcacggagagcctgag 57271
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>gb|AY150385.1| Arabidopsis thaliana putative methionine synthase (At3g03780) mRNA,
            complete cds
          Length = 2329

 Score = 54.0 bits (27), Expect = 6e-05
 Identities = 67/81 (82%)
 Strand = Plus / Plus

                                                                        
Query: 10   gccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgtg 69
            ||||||||||| |||||||  |  |||||  | |||||||| || |||||||||| ||| 
Sbjct: 1396 gccatcaaggaagagatcaagaaagttgttgacatccaagaggaccttgacattgatgtt 1455

                                 
Query: 70   ctcgtgcacggagagcctgag 90
            || || |||||||||||||||
Sbjct: 1456 cttgttcacggagagcctgag 1476
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>gb|AY040010.1| Arabidopsis thaliana putative methionine synthase (At3g03780) mRNA,
            complete cds
          Length = 2599

 Score = 54.0 bits (27), Expect = 6e-05
 Identities = 67/81 (82%)
 Strand = Plus / Plus

                                                                        
Query: 10   gccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgtg 69
            ||||||||||| |||||||  |  |||||  | |||||||| || |||||||||| ||| 
Sbjct: 1468 gccatcaaggaagagatcaagaaagttgttgacatccaagaggaccttgacattgatgtt 1527

                                 
Query: 70   ctcgtgcacggagagcctgag 90
            || || |||||||||||||||
Sbjct: 1528 cttgttcacggagagcctgag 1548
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>emb|AJ608674.1| Arabidopsis thaliana mRNA for cobalamin-independent methionine
            synthase (atms2 gene)
          Length = 2328

 Score = 54.0 bits (27), Expect = 6e-05
 Identities = 67/81 (82%)
 Strand = Plus / Plus

                                                                        
Query: 10   gccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgtg 69
            ||||||||||| |||||||  |  |||||  | |||||||| || |||||||||| ||| 
Sbjct: 1401 gccatcaaggaagagatcaagaaagttgttgacatccaagaggaccttgacattgatgtt 1460

                                 
Query: 70   ctcgtgcacggagagcctgag 90
            || || |||||||||||||||
Sbjct: 1461 cttgttcacggagagcctgag 1481
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>emb|BX825589.1|CNS0A4R8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTSIL46ZE05 of Silique of strain col-0 of Arabidopsis
            thaliana (thale cress)
          Length = 2560

 Score = 54.0 bits (27), Expect = 6e-05
 Identities = 67/81 (82%)
 Strand = Plus / Plus

                                                                        
Query: 10   gccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgtg 69
            ||||||||||| |||||||  |  |||||  | |||||||| || |||||||||| ||| 
Sbjct: 1463 gccatcaaggaagagatcaagaaagttgttgacatccaagaggaccttgacattgatgtt 1522

                                 
Query: 70   ctcgtgcacggagagcctgag 90
            || || |||||||||||||||
Sbjct: 1523 cttgttcacggagagcctgag 1543
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>gb|AY084559.1| Arabidopsis thaliana clone 111720 mRNA, complete sequence
          Length = 2611

 Score = 54.0 bits (27), Expect = 6e-05
 Identities = 67/81 (82%)
 Strand = Plus / Plus

                                                                        
Query: 10   gccatcaaggaggagatcagcanggttgtcaagatccaagaagagcttgacattgntgtg 69
            ||||||||||| |||||||  |  |||||  | |||||||| || |||||||||| ||| 
Sbjct: 1475 gccatcaaggaagagatcaagaaagttgttgacatccaagaggaccttgacattgatgtt 1534

                                 
Query: 70   ctcgtgcacggagagcctgag 90
            || || |||||||||||||||
Sbjct: 1535 cttgttcacggagagcctgag 1555
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>gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome
          Length = 1799146

 Score = 48.1 bits (24), Expect = 0.004
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                         
Query: 44     tccaagaagagcttgacattgntgtgctcgtgcacggagagcc 86
              ||||||||||  ||| ||||| |||||| ||||||||||||||
Sbjct: 830083 tccaagaagaaattggcattgatgtgcttgtgcacggagagcc 830041
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>ref|XM_746997.1| Aspergillus fumigatus Af293
            5-methyltetrahydropteroyltriglutamate--homocysteine
            S-methyltransferase (Afu4g07360) partial mRNA
          Length = 2325

 Score = 46.1 bits (23), Expect = 0.016
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                      
Query: 33   ggttgtcaagatccaagaagagcttgacattgntgtgctcgtgcacggagagcctgag 90
            ||||||||| ||||| |||||||||||| | | ||| ||||| ||||| || ||||||
Sbjct: 1452 ggttgtcaaaatccaggaagagcttgacctcgatgtcctcgtccacggtgaacctgag 1509
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>gb|AC126009.22| Medicago truncatula clone mth2-15c20, complete sequence
          Length = 118705

 Score = 44.1 bits (22), Expect = 0.063
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 46    caagaagagcttgacattgntgtgctcgtgcacggagagcc 86
             |||||||||||||| |||| ||| || || |||||||||||
Sbjct: 71365 caagaagagcttgatattgatgtcctagtacacggagagcc 71325
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>gb|AC137822.30| Medicago truncatula clone mth2-31e20, complete sequence
          Length = 140561

 Score = 44.1 bits (22), Expect = 0.063
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 46    caagaagagcttgacattgntgtgctcgtgcacggagagcc 86
             |||||||||||||| |||| ||| || || |||||||||||
Sbjct: 55895 caagaagagcttgatattgatgtcctagtacacggagagcc 55855
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>dbj|AB226113.1| Aspergillus oryzae cDNA, contig sequence: AoEST2970
          Length = 2927

 Score = 44.1 bits (22), Expect = 0.063
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                     
Query: 34   gttgtcaagatccaagaagagcttgacattgntgtgctcgtgcacggagagcctgag 90
            |||||||||||||| |||||||| ||| | | |||  |||| ||||| |||||||||
Sbjct: 1607 gttgtcaagatccaggaagagctcgacctggatgtcttcgtccacggtgagcctgag 1663
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>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023
          Length = 2661830

 Score = 44.1 bits (22), Expect = 0.063
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                        
Query: 34      gttgtcaagatccaagaagagcttgacattgntgtgctcgtgcacggagagcctgag 90
               |||||||||||||| |||||||| ||| | | |||  |||| ||||| |||||||||
Sbjct: 2186205 gttgtcaagatccaggaagagctcgacctggatgtcttcgtccacggtgagcctgag 2186261
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>gb|AF082893.1| Solanum tuberosum methionine synthase (MS) mRNA, complete cds
          Length = 2644

 Score = 40.1 bits (20), Expect = 0.98
 Identities = 40/47 (85%)
 Strand = Plus / Plus

                                                           
Query: 44   tccaagaagagcttgacattgntgtgctcgtgcacggagagcctgag 90
            |||| ||||| |||||||||| |||  | || |||||||||||||||
Sbjct: 1486 tccaggaagaacttgacattgatgtcttggttcacggagagcctgag 1532
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>ref|XM_550018.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 393

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 39  caagatccaagaagagctt 57
           |||||||||||||||||||
Sbjct: 257 caagatccaagaagagctt 275
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>gb|AC186003.3| Pan troglodytes BAC clone CH251-72E16 from chromosome 5, complete
              sequence
          Length = 191785

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 37     gtcaagatccaagaagagc 55
              |||||||||||||||||||
Sbjct: 149174 gtcaagatccaagaagagc 149192
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>emb|AL357872.23| Human DNA sequence from clone RP11-308P9 on chromosome 9 Contains a CpG
             island, complete sequence
          Length = 93172

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    tcaagatccaagaagagct 56
             |||||||||||||||||||
Sbjct: 59214 tcaagatccaagaagagct 59232
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>gb|AC090324.7| Homo sapiens chromosome 18, clone RP11-693L9, complete sequence
          Length = 154516

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 19    gaggagatcagcanggttgtca 40
             ||||||||||||| ||||||||
Sbjct: 13389 gaggagatcagcacggttgtca 13410
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>gb|AC104125.3| Homo sapiens chromosome 5 clone RP11-432G16, complete sequence
          Length = 180225

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 37     gtcaagatccaagaagagc 55
              |||||||||||||||||||
Sbjct: 116828 gtcaagatccaagaagagc 116810
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>gb|AC020900.5| Homo sapiens chromosome 5 clone CTC-506B8, complete sequence
          Length = 183768

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 37     gtcaagatccaagaagagc 55
              |||||||||||||||||||
Sbjct: 148100 gtcaagatccaagaagagc 148118
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>ref|XM_939268.1| PREDICTED: Homo sapiens similar to Nonhistone chromosomal protein
           HMG-14 (High-mobility group nucleosome binding domain 1)
           (LOC388476), mRNA
          Length = 373

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 19  gaggagatcagcanggttgtca 40
           ||||||||||||| ||||||||
Sbjct: 117 gaggagatcagcacggttgtca 138
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>ref|XM_371117.3| PREDICTED: Homo sapiens similar to Nonhistone chromosomal protein
           HMG-14 (High-mobility group nucleosome binding domain 1)
           (LOC388476), mRNA
          Length = 373

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 19  gaggagatcagcanggttgtca 40
           ||||||||||||| ||||||||
Sbjct: 117 gaggagatcagcacggttgtca 138
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>gb|AC182475.2| Pan troglodytes BAC clone CH251-196J4 from chromosome 5, complete
             sequence
          Length = 147307

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 37    gtcaagatccaagaagagc 55
             |||||||||||||||||||
Sbjct: 73252 gtcaagatccaagaagagc 73270
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 39      caagatccaagaagagctt 57
               |||||||||||||||||||
Sbjct: 1730689 caagatccaagaagagctt 1730671
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>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome
          Length = 4202352

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 39/46 (84%)
 Strand = Plus / Minus

                                                            
Query: 38     tcaagatccaagaagagcttgacattgntgtgctcgtgcacggaga 83
              |||| |||||||||||||||| | | | ||| ||||| ||||||||
Sbjct: 465186 tcaatatccaagaagagcttggcctcgatgtactcgttcacggaga 465141
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>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0504H10
          Length = 143515

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 39    caagatccaagaagagctt 57
             |||||||||||||||||||
Sbjct: 73032 caagatccaagaagagctt 73014
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>gb|AC158992.2| Mus musculus BAC clone RP24-396L14 from chromosome 9, complete sequence
          Length = 163838

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 38     tcaagatccaagaagagct 56
              |||||||||||||||||||
Sbjct: 120568 tcaagatccaagaagagct 120550


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 551,336
Number of Sequences: 3902068
Number of extensions: 551336
Number of successful extensions: 40033
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39881
Number of HSP's gapped (non-prelim): 144
length of query: 90
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 69
effective length of database: 17,151,101,840
effective search space: 1183426026960
effective search space used: 1183426026960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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