>NU155_RAT (P37199) Nuclear pore complex protein Nup155 (Nucleoporin Nup155)|
            (155 kDa nucleoporin) (P140)
          Length = 1390

 Score = 63.5 bits (153), Expect = 5e-10
 Identities = 50/198 (25%), Positives = 89/198 (44%)
 Frame = +3

Query: 30   APISTSQTKYLELLARYYVLKGEHVAAARMLLILAERQCSNAEEAPALDQRYQFLSNAVL 209
            A +  ++ +Y++LL RYY       +AAR+L  LA+   +      +L QR ++++ A+L
Sbjct: 1067 AKVDQNRVRYMDLLWRYYEKNRSFSSAARVLSKLADMHSTEI----SLQQRLEYIARAIL 1122

Query: 210  QAKSAGIAADSSRNPIDSSTVDLLEGKLTVLRFQMQIKQELESMASRLEAIXXXXXXXXX 389
             AKS+   +  +    D   +  LE K+ V R Q+QI++ L+   S   ++         
Sbjct: 1123 SAKSSTAISSIA---ADGEFLHELEEKMEVARIQLQIQETLQRQYSHHSSV--------- 1170

Query: 390  XXXXXNILXXXXXXXXXXXXXXXXXXNLKSITQLYNDYAVPFNLWEVCLEMLNFANYSGD 569
                                       L  IT+LY ++A PF L E  L +++ A YS  
Sbjct: 1171 -----------------QDAISQLDSELMDITKLYGEFADPFKLAECKLAIIHCAGYS-- 1211

Query: 570  ADSKIVREIWARLLDQTL 623
             D  +V  +W  ++++ L
Sbjct: 1212 -DPILVHTLWQDIIEKEL 1228

>NU155_MOUSE (Q99P88) Nuclear pore complex protein Nup155 (Nucleoporin Nup155)|
            (155 kDa nucleoporin)
          Length = 1391

 Score = 63.2 bits (152), Expect = 6e-10
 Identities = 50/198 (25%), Positives = 89/198 (44%)
 Frame = +3

Query: 30   APISTSQTKYLELLARYYVLKGEHVAAARMLLILAERQCSNAEEAPALDQRYQFLSNAVL 209
            A +  ++ +Y++LL RYY       +AAR+L  LA+   +      +L QR ++++ A+L
Sbjct: 1068 ARVDQNRVRYMDLLWRYYEKNRSFSSAARVLSKLADMHSTEI----SLQQRLEYIARAIL 1123

Query: 210  QAKSAGIAADSSRNPIDSSTVDLLEGKLTVLRFQMQIKQELESMASRLEAIXXXXXXXXX 389
             AKS+   +  +    D   +  LE K+ V R Q+QI++ L+   S   ++         
Sbjct: 1124 SAKSSTAISSIA---ADGEFLHELEEKMEVARIQLQIQETLQRQYSHHSSV--------- 1171

Query: 390  XXXXXNILXXXXXXXXXXXXXXXXXXNLKSITQLYNDYAVPFNLWEVCLEMLNFANYSGD 569
                                       L  IT+LY ++A PF L E  L +++ A YS  
Sbjct: 1172 -----------------QDAISQLDSELMDITKLYGEFADPFKLAECKLAVIHCAGYS-- 1212

Query: 570  ADSKIVREIWARLLDQTL 623
             D  +V  +W  ++++ L
Sbjct: 1213 -DPILVHTLWQDIIEKEL 1229

>NU155_HUMAN (O75694) Nuclear pore complex protein Nup155 (Nucleoporin Nup155)|
            (155 kDa nucleoporin)
          Length = 1391

 Score = 62.8 bits (151), Expect = 8e-10
 Identities = 50/198 (25%), Positives = 89/198 (44%)
 Frame = +3

Query: 30   APISTSQTKYLELLARYYVLKGEHVAAARMLLILAERQCSNAEEAPALDQRYQFLSNAVL 209
            A +  ++ +Y++LL RYY        AAR+L  LA+   +      +L QR ++++ A+L
Sbjct: 1068 AKVDQNRVRYMDLLWRYYEKNRSFSNAARVLSRLADMHSTEI----SLQQRLEYIARAIL 1123

Query: 210  QAKSAGIAADSSRNPIDSSTVDLLEGKLTVLRFQMQIKQELESMASRLEAIXXXXXXXXX 389
             AKS+   +  +    D   +  LE K+ V R Q+QI++ L+   S   ++         
Sbjct: 1124 SAKSSTAISSIA---ADGEFLHELEEKMEVARIQLQIQETLQRQYSHHSSV--------- 1171

Query: 390  XXXXXNILXXXXXXXXXXXXXXXXXXNLKSITQLYNDYAVPFNLWEVCLEMLNFANYSGD 569
                                       L  IT+LY ++A PF L E  L +++ A YS  
Sbjct: 1172 -----------------QDAVSQLDSELMDITKLYGEFADPFKLAECKLAIIHCAGYS-- 1212

Query: 570  ADSKIVREIWARLLDQTL 623
             D  +V+ +W  ++++ L
Sbjct: 1213 -DPILVQTLWQDIIEKEL 1229

>NU157_YEAST (P40064) Nucleoporin NUP157 (Nuclear pore protein NUP157)|
          Length = 1391

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 480  ITQLYNDYAVPFNLWEVCLEMLNFANYSGDADSKIVREIWARLLD 614
            ++ L+ND A P + +E+ L +   + +    D K+++  W RLLD
Sbjct: 1202 LSDLFNDCADPLDYYEIKLRIFKVSQFK---DEKVIQGEWNRLLD 1243

>NG06_SCHPO (Q9URX8) Probable nucleoporin C890.06|
          Length = 1315

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 38/180 (21%), Positives = 73/180 (40%), Gaps = 4/180 (2%)
 Frame = +3

Query: 39   STSQTKYLELLARYYVLKGEHVAAARMLLILAERQCSNAEEAPALDQRYQFLSNAVLQAK 218
            ST   K  +LL +YY  + ++  A+ +L  LA         A +L+QR ++L+ A  +  
Sbjct: 990  STKDMKIADLLWQYYAKREQYYQASIVLYDLATTHL-----AFSLEQRIEYLTRA--KGF 1042

Query: 219  SAGIAADSSRNPIDSSTVDLLEGKLTVLRFQ----MQIKQELESMASRLEAIXXXXXXXX 386
             +    +S R+ ++   + +LE +L V   Q    + I+ ++    S+ E +        
Sbjct: 1043 GSCHVPNSLRHKMNKVMLSVLE-QLDVASIQDDVLIAIRGDMRIPTSKREELSKQLDG-- 1099

Query: 387  XXXXXXNILXXXXXXXXXXXXXXXXXXNLKSITQLYNDYAVPFNLWEVCLEMLNFANYSG 566
                                        +  ++ L+N+YA P    E+CL +   A+Y G
Sbjct: 1100 ---------------------------EIIPLSDLFNNYADPLGYGEICLSIFQCADYRG 1132

>KRA59_HUMAN (P26371) Keratin-associated protein 5-9 (Keratin-associated protein|
           5.9) (Ultrahigh sulfur keratin-associated protein 5.9)
           (Keratin, cuticle, ultrahigh sulfur 1) (Keratin, ultra
           high-sulfur matrix protein A) (UHS keratin A) (UHS KerA)
          Length = 169

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +2

Query: 74  KVLCSQGGACCCCQDVIDIGGKAVL*CRRSSCS*PEVSIS--EQRCATSQKCRHCC 235
           K  CSQ   C CC+      G+    C +SSC  P  S S     C  S  C+ CC
Sbjct: 103 KPYCSQ---CSCCKPCCSSSGRGSS-CCQSSCCKPCCSSSGCGSSCCQSSCCKPCC 154

>P54_ENTFC (P13692) Protein P54 precursor|
          Length = 516

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = +3

Query: 174 DQRYQFLSNAVLQAKSAGIAADSSRNPIDSSTVDLLEGKLTVLRFQMQIKQELESMASRL 353
           D++   L N    A+S   A +   + I++   DLL  + T+ +   Q+KQE++ +  R+
Sbjct: 38  DKKIADLQNQQASAQSQIEALEGQVSAINTKAQDLLTKQDTLRKESAQLKQEIKDLQERI 97

Query: 354 E 356
           E
Sbjct: 98  E 98

>NU170_YEAST (P38181) Nucleoporin NUP170 (Nuclear pore protein NUP170)|
          Length = 1502

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 477  SITQLYNDYAVPFNLWEVCLEMLNFANYSGDADSKIVREIWARL 608
            S ++L+ND+AVP +  E+ L +   A++    D +++   W  L
Sbjct: 1303 STSELFNDFAVPLSYHEIALFIFKIADF---RDHEVIMAKWDEL 1343

>IFT74_MOUSE (Q8BKE9) Intraflagellar transport 74 homolog (Coiled-coil|
           domain-containing protein 2) (Capillary morphogenesis
           protein 1) (CMG-1)
          Length = 600

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 210 QAKSAGIAADSSRNPIDSSTVDLLEGKLTVLRFQMQIKQELESMASRLE 356
           Q  +  + +DS R  +D   ++LLE K+T    Q  +K +++ M + LE
Sbjct: 436 QTTARNLTSDSQRLQLDLQKMELLESKMT--EEQQSLKNKIKQMTADLE 482


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,463,127
Number of Sequences: 219361
Number of extensions: 1486352
Number of successful extensions: 3011
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3011
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)