>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
complete sequence
Length = 36192742
Score = 149 bits (75), Expect = 1e-32
Identities = 186/223 (83%)
Strand = Plus / Minus
Query: 233 ttaccagatcagttcattagaggactgtcaagtgcttctttgcaaggccgggcgcaaatt 292
|||||||||||||| ||||| || ||||||| ||| |||||||||||||| ||||| ||
Sbjct: 620677 ttaccagatcagtttattagtgggctgtcaaatgcctctttgcaaggccgagcgcagatc 620618
Query: 293 gttcgagattcacaagtaaattcagaagagaagggccaagatagttctttggtattctat 352
|| ||||||||||||||| |||| |||| | | |||| |||||||||| ||||||
Sbjct: 620617 attacagattcacaagtaaactcaggagaggaagataaagactgttctttggttttctat 620558
Query: 353 ttggatggggcacacagccctgaaagtatggagatttgtgcgaggtggttttcccttgct 412
||||||||||| ||||| |||||||||||||| |||||||| || |||||| || ||
Sbjct: 620557 ttggatggggctcacagtcctgaaagtatggaaatttgtgctagatggtttagccatgtc 620498
Query: 413 actaaggatgatagaaaagtaccatcttctatggagcagtctc 455
||||| || ||||| | |||||||||||| |||| ||||||||
Sbjct: 620497 actaaagaggataggacagtaccatcttccatggtgcagtctc 620455
Score = 147 bits (74), Expect = 5e-32
Identities = 134/154 (87%)
Strand = Plus / Minus
Query: 63 tttcactccaagtcgctgatcctttgaagccacatcagttgaaagatcaacatcttggac 122
||||||||||||| || |||||||| | || ||||| || || ||||||||||||||||
Sbjct: 620960 tttcactccaagttgcacatcctttggaaccccatcaattaaaggatcaacatcttggac 620901
Query: 123 tgcaaggtgaacaccaatatgtaaatgctggccttgcagtcgcactcgccagtacatggc 182
||| ||||||||||||||||||||||||||||||||||| ||| | || ||||||||||
Sbjct: 620900 tgcgtggtgaacaccaatatgtaaatgctggccttgcagttgcattggctagtacatggc 620841
Query: 183 ttgagaagcagggatacgtggacagaatgccact 216
|||||||||| ||| | ||||| ||||| |||||
Sbjct: 620840 ttgagaagcaaggacatgtggaaagaataccact 620807
Score = 77.8 bits (39), Expect = 4e-11
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 477 agattcttctgttcaactgcatgtctgtgagagatcctatgagattgcttccacatcttg 536
|||||||||| ||||| |||||||| ||||| ||||||||||| |||||||| ||||||
Sbjct: 620317 agattcttctattcaattgcatgtccgtgagggatcctatgaggttgcttccgcatcttc 620258
Query: 537 tcaatactgcaactcaaaatggt 559
| |||| ||||||||||||||
Sbjct: 620257 tggatacatcaactcaaaatggt 620235
Score = 54.0 bits (27), Expect = 5e-04
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 560 gtccactttgatctggccctatttgtgccaaaccagtcacaatacaa 606
||||||||||| |||| || |||||||||||||| |||||||||||
Sbjct: 620027 gtccactttgagatggctctttttgtgccaaaccaatcacaatacaa 619981
Score = 44.1 bits (22), Expect = 0.53
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 13 cagaagaggcaatgattgctct 34
||||||||||||||||||||||
Sbjct: 621116 cagaagaggcaatgattgctct 621095
>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBb0005F16, complete sequence
Length = 160053
Score = 149 bits (75), Expect = 1e-32
Identities = 186/223 (83%)
Strand = Plus / Minus
Query: 233 ttaccagatcagttcattagaggactgtcaagtgcttctttgcaaggccgggcgcaaatt 292
|||||||||||||| ||||| || ||||||| ||| |||||||||||||| ||||| ||
Sbjct: 6560 ttaccagatcagtttattagtgggctgtcaaatgcctctttgcaaggccgagcgcagatc 6501
Query: 293 gttcgagattcacaagtaaattcagaagagaagggccaagatagttctttggtattctat 352
|| ||||||||||||||| |||| |||| | | |||| |||||||||| ||||||
Sbjct: 6500 attacagattcacaagtaaactcaggagaggaagataaagactgttctttggttttctat 6441
Query: 353 ttggatggggcacacagccctgaaagtatggagatttgtgcgaggtggttttcccttgct 412
||||||||||| ||||| |||||||||||||| |||||||| || |||||| || ||
Sbjct: 6440 ttggatggggctcacagtcctgaaagtatggaaatttgtgctagatggtttagccatgtc 6381
Query: 413 actaaggatgatagaaaagtaccatcttctatggagcagtctc 455
||||| || ||||| | |||||||||||| |||| ||||||||
Sbjct: 6380 actaaagaggataggacagtaccatcttccatggtgcagtctc 6338
Score = 147 bits (74), Expect = 5e-32
Identities = 134/154 (87%)
Strand = Plus / Minus
Query: 63 tttcactccaagtcgctgatcctttgaagccacatcagttgaaagatcaacatcttggac 122
||||||||||||| || |||||||| | || ||||| || || ||||||||||||||||
Sbjct: 6843 tttcactccaagttgcacatcctttggaaccccatcaattaaaggatcaacatcttggac 6784
Query: 123 tgcaaggtgaacaccaatatgtaaatgctggccttgcagtcgcactcgccagtacatggc 182
||| ||||||||||||||||||||||||||||||||||| ||| | || ||||||||||
Sbjct: 6783 tgcgtggtgaacaccaatatgtaaatgctggccttgcagttgcattggctagtacatggc 6724
Query: 183 ttgagaagcagggatacgtggacagaatgccact 216
|||||||||| ||| | ||||| ||||| |||||
Sbjct: 6723 ttgagaagcaaggacatgtggaaagaataccact 6690
Score = 77.8 bits (39), Expect = 4e-11
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 477 agattcttctgttcaactgcatgtctgtgagagatcctatgagattgcttccacatcttg 536
|||||||||| ||||| |||||||| ||||| ||||||||||| |||||||| ||||||
Sbjct: 6200 agattcttctattcaattgcatgtccgtgagggatcctatgaggttgcttccgcatcttc 6141
Query: 537 tcaatactgcaactcaaaatggt 559
| |||| ||||||||||||||
Sbjct: 6140 tggatacatcaactcaaaatggt 6118
Score = 54.0 bits (27), Expect = 5e-04
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 560 gtccactttgatctggccctatttgtgccaaaccagtcacaatacaa 606
||||||||||| |||| || |||||||||||||| |||||||||||
Sbjct: 5910 gtccactttgagatggctctttttgtgccaaaccaatcacaatacaa 5864
Score = 44.1 bits (22), Expect = 0.53
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 13 cagaagaggcaatgattgctct 34
||||||||||||||||||||||
Sbjct: 6999 cagaagaggcaatgattgctct 6978
>ref|NM_197226.1| Oryza sativa (japonica cultivar-group) putative folylpolyglutamate
synthetase (OSJNBb0073N24.10), mRNA
Length = 1954
Score = 79.8 bits (40), Expect = 1e-11
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 347 ttctatttggatggggcacacagccctgaaagtatggagatttgtgcgaggtggttttcc 406
|||||||||||||| ||||| ||||| ||||||||||| |||||||||| ||||||||||
Sbjct: 1105 ttctatttggatggagcacatagcccagaaagtatggaaatttgtgcgaagtggttttcc 1164
Score = 63.9 bits (32), Expect = 6e-07
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 107 gatcaacatcttggactgcaaggtgaacaccaatatgtaaatgctggccttgcagtcgca 166
||||||| |||||| || || |||||||||||||| | |||||||||||||||||||||
Sbjct: 931 gatcaacctcttgggctacatggtgaacaccaatacatgaatgctggccttgcagtcgca 990
Score = 58.0 bits (29), Expect = 4e-05
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 474 ggaagattcttctgttcaactgcatgtctgtgagagatcct 514
|||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 1232 ggaagattctcctgttcaattgcatgtctgtaagagatcct 1272
Score = 46.1 bits (23), Expect = 0.13
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 231 ccttaccagatcagttcattagaggactgtcaagtgcttctttgcaaggccgggcgcaaa 290
|||| |||||||| ||||| ||| ||||||||||||| ||||||||| || || || |
Sbjct: 998 ccttgccagatcaattcatcgaagggctgtcaagtgcttgtttgcaaggacgagcacaga 1057
Query: 291 ttgttcgagat 301
|||||| ||||
Sbjct: 1058 ttgttccagat 1068
Score = 44.1 bits (22), Expect = 0.53
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 561 tccactttgatctggccctatttgtgccaaaccagtcacaatacaa 606
|||| ||||||| ||||||||||||||||| || || ||||||||
Sbjct: 1319 tccagtttgatcatgccctatttgtgccaaatcaatctcaatacaa 1364
>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete
sequence
Length = 130058
Score = 79.8 bits (40), Expect = 1e-11
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 347 ttctatttggatggggcacacagccctgaaagtatggagatttgtgcgaggtggttttcc 406
|||||||||||||| ||||| ||||| ||||||||||| |||||||||| ||||||||||
Sbjct: 47755 ttctatttggatggagcacatagcccagaaagtatggaaatttgtgcgaagtggttttcc 47696
Score = 63.9 bits (32), Expect = 6e-07
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 107 gatcaacatcttggactgcaaggtgaacaccaatatgtaaatgctggccttgcagtcgca 166
||||||| |||||| || || |||||||||||||| | |||||||||||||||||||||
Sbjct: 48056 gatcaacctcttgggctacatggtgaacaccaatacatgaatgctggccttgcagtcgca 47997
Score = 52.0 bits (26), Expect = 0.002
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 477 agattcttctgttcaactgcatgtctgtgagagatcct 514
||||||| |||||||| ||||||||||| |||||||||
Sbjct: 47493 agattctcctgttcaattgcatgtctgtaagagatcct 47456
Score = 46.1 bits (23), Expect = 0.13
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 231 ccttaccagatcagttcattagaggactgtcaagtgcttctttgcaaggccgggcgcaaa 290
|||| |||||||| ||||| ||| ||||||||||||| ||||||||| || || || |
Sbjct: 47862 ccttgccagatcaattcatcgaagggctgtcaagtgcttgtttgcaaggacgagcacaga 47803
Query: 291 ttgttcgagat 301
|||||| ||||
Sbjct: 47802 ttgttccagat 47792
Score = 44.1 bits (22), Expect = 0.53
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 561 tccactttgatctggccctatttgtgccaaaccagtcacaatacaa 606
|||| ||||||| ||||||||||||||||| || || ||||||||
Sbjct: 47282 tccagtttgatcatgccctatttgtgccaaatcaatctcaatacaa 47237
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 79.8 bits (40), Expect = 1e-11
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 347 ttctatttggatggggcacacagccctgaaagtatggagatttgtgcgaggtggttttcc 406
|||||||||||||| ||||| ||||| ||||||||||| |||||||||| ||||||||||
Sbjct: 18686477 ttctatttggatggagcacatagcccagaaagtatggaaatttgtgcgaagtggttttcc 18686418
Score = 63.9 bits (32), Expect = 6e-07
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 107 gatcaacatcttggactgcaaggtgaacaccaatatgtaaatgctggccttgcagtcgca 166
||||||| |||||| || || |||||||||||||| | |||||||||||||||||||||
Sbjct: 18686778 gatcaacctcttgggctacatggtgaacaccaatacatgaatgctggccttgcagtcgca 18686719
Score = 52.0 bits (26), Expect = 0.002
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 477 agattcttctgttcaactgcatgtctgtgagagatcct 514
||||||| |||||||| ||||||||||| |||||||||
Sbjct: 18686215 agattctcctgttcaattgcatgtctgtaagagatcct 18686178
Score = 46.1 bits (23), Expect = 0.13
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 231 ccttaccagatcagttcattagaggactgtcaagtgcttctttgcaaggccgggcgcaaa 290
|||| |||||||| ||||| ||| ||||||||||||| ||||||||| || || || |
Sbjct: 18686584 ccttgccagatcaattcatcgaagggctgtcaagtgcttgtttgcaaggacgagcacaga 18686525
Query: 291 ttgttcgagat 301
|||||| ||||
Sbjct: 18686524 ttgttccagat 18686514
Score = 44.1 bits (22), Expect = 0.53
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 561 tccactttgatctggccctatttgtgccaaaccagtcacaatacaa 606
|||| ||||||| ||||||||||||||||| || || ||||||||
Sbjct: 18686004 tccagtttgatcatgccctatttgtgccaaatcaatctcaatacaa 18685959
>dbj|AK121595.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033039A16, full
insert sequence
Length = 2388
Score = 79.8 bits (40), Expect = 1e-11
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 347 ttctatttggatggggcacacagccctgaaagtatggagatttgtgcgaggtggttttcc 406
|||||||||||||| ||||| ||||| ||||||||||| |||||||||| ||||||||||
Sbjct: 1552 ttctatttggatggagcacatagcccagaaagtatggaaatttgtgcgaagtggttttcc 1611
Score = 63.9 bits (32), Expect = 6e-07
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 107 gatcaacatcttggactgcaaggtgaacaccaatatgtaaatgctggccttgcagtcgca 166
||||||| |||||| || || |||||||||||||| | |||||||||||||||||||||
Sbjct: 1321 gatcaacctcttgggctacatggtgaacaccaatacatgaatgctggccttgcagtcgca 1380
Score = 58.0 bits (29), Expect = 4e-05
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 474 ggaagattcttctgttcaactgcatgtctgtgagagatcct 514
|||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 1679 ggaagattctcctgttcaattgcatgtctgtaagagatcct 1719
Score = 46.1 bits (23), Expect = 0.13
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 231 ccttaccagatcagttcattagaggactgtcaagtgcttctttgcaaggccgggcgcaaa 290
|||| |||||||| ||||| ||| ||||||||||||| ||||||||| || || || |
Sbjct: 1445 ccttgccagatcaattcatcgaagggctgtcaagtgcttgtttgcaaggacgagcacaga 1504
Query: 291 ttgttcgagat 301
|||||| ||||
Sbjct: 1505 ttgttccagat 1515
Score = 44.1 bits (22), Expect = 0.53
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 561 tccactttgatctggccctatttgtgccaaaccagtcacaatacaa 606
|||| ||||||| ||||||||||||||||| || || ||||||||
Sbjct: 1766 tccagtttgatcatgccctatttgtgccaaatcaatctcaatacaa 1811
>dbj|AK072481.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023125G01, full
insert sequence
Length = 2072
Score = 79.8 bits (40), Expect = 1e-11
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 347 ttctatttggatggggcacacagccctgaaagtatggagatttgtgcgaggtggttttcc 406
|||||||||||||| ||||| ||||| ||||||||||| |||||||||| ||||||||||
Sbjct: 1223 ttctatttggatggagcacatagcccagaaagtatggaaatttgtgcgaagtggttttcc 1282
Score = 63.9 bits (32), Expect = 6e-07
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 107 gatcaacatcttggactgcaaggtgaacaccaatatgtaaatgctggccttgcagtcgca 166
||||||| |||||| || || |||||||||||||| | |||||||||||||||||||||
Sbjct: 992 gatcaacctcttgggctacatggtgaacaccaatacatgaatgctggccttgcagtcgca 1051
Score = 58.0 bits (29), Expect = 4e-05
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 474 ggaagattcttctgttcaactgcatgtctgtgagagatcct 514
|||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 1350 ggaagattctcctgttcaattgcatgtctgtaagagatcct 1390
Score = 46.1 bits (23), Expect = 0.13
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 231 ccttaccagatcagttcattagaggactgtcaagtgcttctttgcaaggccgggcgcaaa 290
|||| |||||||| ||||| ||| ||||||||||||| ||||||||| || || || |
Sbjct: 1116 ccttgccagatcaattcatcgaagggctgtcaagtgcttgtttgcaaggacgagcacaga 1175
Query: 291 ttgttcgagat 301
|||||| ||||
Sbjct: 1176 ttgttccagat 1186
Score = 44.1 bits (22), Expect = 0.53
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 561 tccactttgatctggccctatttgtgccaaaccagtcacaatacaa 606
|||| ||||||| ||||||||||||||||| || || ||||||||
Sbjct: 1437 tccagtttgatcatgccctatttgtgccaaatcaatctcaatacaa 1482
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 79.8 bits (40), Expect = 1e-11
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 347 ttctatttggatggggcacacagccctgaaagtatggagatttgtgcgaggtggttttcc 406
|||||||||||||| ||||| ||||| ||||||||||| |||||||||| ||||||||||
Sbjct: 18697330 ttctatttggatggagcacatagcccagaaagtatggaaatttgtgcgaagtggttttcc 18697271
Score = 63.9 bits (32), Expect = 6e-07
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 107 gatcaacatcttggactgcaaggtgaacaccaatatgtaaatgctggccttgcagtcgca 166
||||||| |||||| || || |||||||||||||| | |||||||||||||||||||||
Sbjct: 18697631 gatcaacctcttgggctacatggtgaacaccaatacatgaatgctggccttgcagtcgca 18697572
Score = 52.0 bits (26), Expect = 0.002
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 477 agattcttctgttcaactgcatgtctgtgagagatcct 514
||||||| |||||||| ||||||||||| |||||||||
Sbjct: 18697068 agattctcctgttcaattgcatgtctgtaagagatcct 18697031
Score = 46.1 bits (23), Expect = 0.13
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 231 ccttaccagatcagttcattagaggactgtcaagtgcttctttgcaaggccgggcgcaaa 290
|||| |||||||| ||||| ||| ||||||||||||| ||||||||| || || || |
Sbjct: 18697437 ccttgccagatcaattcatcgaagggctgtcaagtgcttgtttgcaaggacgagcacaga 18697378
Query: 291 ttgttcgagat 301
|||||| ||||
Sbjct: 18697377 ttgttccagat 18697367
Score = 44.1 bits (22), Expect = 0.53
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 561 tccactttgatctggccctatttgtgccaaaccagtcacaatacaa 606
|||| ||||||| ||||||||||||||||| || || ||||||||
Sbjct: 18696857 tccagtttgatcatgccctatttgtgccaaatcaatctcaatacaa 18696812
>gb|AC098597.2| Homo sapiens BAC clone RP11-521C6 from 4, complete sequence
Length = 177846
Score = 40.1 bits (20), Expect = 8.2
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 534 ttgtcaatactgcaactcaa 553
||||||||||||||||||||
Sbjct: 167555 ttgtcaatactgcaactcaa 167536
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,834,584
Number of Sequences: 3902068
Number of extensions: 4834584
Number of successful extensions: 85702
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85490
Number of HSP's gapped (non-prelim): 205
length of query: 606
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 583
effective length of database: 17,143,297,704
effective search space: 9994542561432
effective search space used: 9994542561432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)