| Clone Name | bags17g23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT017130.1| Zea mays clone EL01N0365F01.c mRNA sequence Length = 736 Score = 48.1 bits (24), Expect = 8e-04 Identities = 31/34 (91%) Strand = Plus / Plus Query: 1 aggaggacgacagcaactggccgnancccgaccg 34 |||||||||||||||||||||| | |||||||| Sbjct: 278 aggaggacgacagcaactggcccgagcccgaccg 311
>gb|AY103591.1| Zea mays PCO111548 mRNA sequence Length = 848 Score = 48.1 bits (24), Expect = 8e-04 Identities = 31/34 (91%) Strand = Plus / Plus Query: 1 aggaggacgacagcaactggccgnancccgaccg 34 |||||||||||||||||||||| | |||||||| Sbjct: 344 aggaggacgacagcaactggcctgagcccgaccg 377
>ref|XM_479710.1| Oryza sativa (japonica cultivar-group), mRNA Length = 318 Score = 40.1 bits (20), Expect = 0.20 Identities = 30/34 (88%) Strand = Plus / Plus Query: 1 aggaggacgacagcaactggccgnancccgaccg 34 ||||||| ||||||||||||||| | || ||||| Sbjct: 80 aggaggatgacagcaactggccggagccagaccg 113
>gb|AF338343.1|AF338343 Oryza sativa mago nashi-like protein mRNA, complete cds Length = 820 Score = 40.1 bits (20), Expect = 0.20 Identities = 30/34 (88%) Strand = Plus / Plus Query: 1 aggaggacgacagcaactggccgnancccgaccg 34 |||||||||||| ||||||||| | |||||||| Sbjct: 367 aggaggacgacaacaactggccagagcccgaccg 400
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 0.20 Identities = 30/34 (88%) Strand = Plus / Plus Query: 1 aggaggacgacagcaactggccgnancccgaccg 34 |||||||||||| ||||||||| | |||||||| Sbjct: 10959013 aggaggacgacaacaactggccagagcccgaccg 10959046
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 0.20 Identities = 30/34 (88%) Strand = Plus / Plus Query: 1 aggaggacgacagcaactggccgnancccgaccg 34 ||||||| ||||||||||||||| | || ||||| Sbjct: 378149 aggaggatgacagcaactggccggagccagaccg 378182
>dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0450B04 Length = 153268 Score = 40.1 bits (20), Expect = 0.20 Identities = 30/34 (88%) Strand = Plus / Plus Query: 1 aggaggacgacagcaactggccgnancccgaccg 34 ||||||| ||||||||||||||| | || ||||| Sbjct: 87663 aggaggatgacagcaactggccggagccagaccg 87696
>dbj|AK121477.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149H05, full insert sequence Length = 732 Score = 40.1 bits (20), Expect = 0.20 Identities = 30/34 (88%) Strand = Plus / Plus Query: 1 aggaggacgacagcaactggccgnancccgaccg 34 |||||||||||| ||||||||| | |||||||| Sbjct: 321 aggaggacgacaacaactggccagagcccgaccg 354
>dbj|AK063847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-C07, full insert sequence Length = 805 Score = 40.1 bits (20), Expect = 0.20 Identities = 30/34 (88%) Strand = Plus / Plus Query: 1 aggaggacgacagcaactggccgnancccgaccg 34 |||||||||||| ||||||||| | |||||||| Sbjct: 320 aggaggacgacaacaactggccagagcccgaccg 353
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 0.20 Identities = 30/34 (88%) Strand = Plus / Plus Query: 1 aggaggacgacagcaactggccgnancccgaccg 34 |||||||||||| ||||||||| | |||||||| Sbjct: 10958712 aggaggacgacaacaactggccagagcccgaccg 10958745
>emb|AL954152.5|CNS08CCQ Oryza sativa chromosome 12, . BAC OSJNBb0034E16 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 124204 Score = 40.1 bits (20), Expect = 0.20 Identities = 30/34 (88%) Strand = Plus / Plus Query: 1 aggaggacgacagcaactggccgnancccgaccg 34 |||||||||||| ||||||||| | |||||||| Sbjct: 108076 aggaggacgacaacaactggccagagcccgaccg 108109
>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 Length = 1779707 Score = 38.2 bits (19), Expect = 0.78 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 ggaggacgacagcaactgg 20 ||||||||||||||||||| Sbjct: 1354269 ggaggacgacagcaactgg 1354287
>emb|AL451164.13| Human DNA sequence from clone RP11-298E9 on chromosome 10 Contains the 3' end of the PFKP gene for phosphofructokinase platelet, a novel gene (FLJ40226) the PITRM1 gene for pitrilysin metalloproteinase 1 (MP1 hMP1 KIAA1104), three novel genes and two CpG islands, complete sequence Length = 163070 Score = 36.2 bits (18), Expect = 3.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 2 ggaggacgacagcaactg 19 |||||||||||||||||| Sbjct: 49483 ggaggacgacagcaactg 49500
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 36.2 bits (18), Expect = 3.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 6 gacgacagcaactggccg 23 |||||||||||||||||| Sbjct: 2710773 gacgacagcaactggccg 2710756
>emb|AL117409.1|HSM801061 Homo sapiens mRNA; cDNA DKFZp434G152 (from clone DKFZp434G152) Length = 3252 Score = 36.2 bits (18), Expect = 3.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 ggaggacgacagcaactg 19 |||||||||||||||||| Sbjct: 174 ggaggacgacagcaactg 157
>emb|CR749279.1| Homo sapiens mRNA; cDNA DKFZp686F08225 (from clone DKFZp686F08225) Length = 5777 Score = 36.2 bits (18), Expect = 3.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 ggaggacgacagcaactg 19 |||||||||||||||||| Sbjct: 2011 ggaggacgacagcaactg 1994 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 85,160 Number of Sequences: 3902068 Number of extensions: 85160 Number of successful extensions: 19544 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19492 Number of HSP's gapped (non-prelim): 52 length of query: 34 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 14 effective length of database: 17,155,003,908 effective search space: 240170054712 effective search space used: 240170054712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)