ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags17g23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT017130.1| Zea mays clone EL01N0365F01.c mRNA sequence 48 8e-04
2gb|AY103591.1| Zea mays PCO111548 mRNA sequence 48 8e-04
3ref|XM_479710.1| Oryza sativa (japonica cultivar-group), mRNA 40 0.20
4gb|AF338343.1|AF338343 Oryza sativa mago nashi-like protein mRNA... 40 0.20
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 0.20
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 0.20
7dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic D... 40 0.20
8dbj|AK121477.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 0.20
9dbj|AK063847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 0.20
10gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 0.20
11emb|AL954152.5|CNS08CCQ Oryza sativa chromosome 12, . BAC OSJNBb... 40 0.20
12dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 38 0.78
13emb|AL451164.13| Human DNA sequence from clone RP11-298E9 on chr... 36 3.1
14gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 36 3.1
15emb|AL117409.1|HSM801061 Homo sapiens mRNA; cDNA DKFZp434G152 (f... 36 3.1
16emb|CR749279.1| Homo sapiens mRNA; cDNA DKFZp686F08225 (from clo... 36 3.1

>gb|BT017130.1| Zea mays clone EL01N0365F01.c mRNA sequence
          Length = 736

 Score = 48.1 bits (24), Expect = 8e-04
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 1   aggaggacgacagcaactggccgnancccgaccg 34
           ||||||||||||||||||||||  | ||||||||
Sbjct: 278 aggaggacgacagcaactggcccgagcccgaccg 311



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>gb|AY103591.1| Zea mays PCO111548 mRNA sequence
          Length = 848

 Score = 48.1 bits (24), Expect = 8e-04
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 1   aggaggacgacagcaactggccgnancccgaccg 34
           ||||||||||||||||||||||  | ||||||||
Sbjct: 344 aggaggacgacagcaactggcctgagcccgaccg 377



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>ref|XM_479710.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 318

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 30/34 (88%)
 Strand = Plus / Plus

                                             
Query: 1   aggaggacgacagcaactggccgnancccgaccg 34
           ||||||| ||||||||||||||| | || |||||
Sbjct: 80  aggaggatgacagcaactggccggagccagaccg 113



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>gb|AF338343.1|AF338343 Oryza sativa mago nashi-like protein mRNA, complete cds
          Length = 820

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 30/34 (88%)
 Strand = Plus / Plus

                                             
Query: 1   aggaggacgacagcaactggccgnancccgaccg 34
           |||||||||||| |||||||||  | ||||||||
Sbjct: 367 aggaggacgacaacaactggccagagcccgaccg 400



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 30/34 (88%)
 Strand = Plus / Plus

                                                  
Query: 1        aggaggacgacagcaactggccgnancccgaccg 34
                |||||||||||| |||||||||  | ||||||||
Sbjct: 10959013 aggaggacgacaacaactggccagagcccgaccg 10959046



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 30/34 (88%)
 Strand = Plus / Plus

                                                
Query: 1      aggaggacgacagcaactggccgnancccgaccg 34
              ||||||| ||||||||||||||| | || |||||
Sbjct: 378149 aggaggatgacagcaactggccggagccagaccg 378182



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>dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0450B04
          Length = 153268

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 30/34 (88%)
 Strand = Plus / Plus

                                               
Query: 1     aggaggacgacagcaactggccgnancccgaccg 34
             ||||||| ||||||||||||||| | || |||||
Sbjct: 87663 aggaggatgacagcaactggccggagccagaccg 87696



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>dbj|AK121477.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149H05, full
           insert sequence
          Length = 732

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 30/34 (88%)
 Strand = Plus / Plus

                                             
Query: 1   aggaggacgacagcaactggccgnancccgaccg 34
           |||||||||||| |||||||||  | ||||||||
Sbjct: 321 aggaggacgacaacaactggccagagcccgaccg 354



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>dbj|AK063847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-C07, full
           insert sequence
          Length = 805

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 30/34 (88%)
 Strand = Plus / Plus

                                             
Query: 1   aggaggacgacagcaactggccgnancccgaccg 34
           |||||||||||| |||||||||  | ||||||||
Sbjct: 320 aggaggacgacaacaactggccagagcccgaccg 353



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 30/34 (88%)
 Strand = Plus / Plus

                                                  
Query: 1        aggaggacgacagcaactggccgnancccgaccg 34
                |||||||||||| |||||||||  | ||||||||
Sbjct: 10958712 aggaggacgacaacaactggccagagcccgaccg 10958745



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>emb|AL954152.5|CNS08CCQ Oryza sativa chromosome 12, . BAC OSJNBb0034E16 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 124204

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 30/34 (88%)
 Strand = Plus / Plus

                                                
Query: 1      aggaggacgacagcaactggccgnancccgaccg 34
              |||||||||||| |||||||||  | ||||||||
Sbjct: 108076 aggaggacgacaacaactggccagagcccgaccg 108109



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>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102
          Length = 1779707

 Score = 38.2 bits (19), Expect = 0.78
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 2       ggaggacgacagcaactgg 20
               |||||||||||||||||||
Sbjct: 1354269 ggaggacgacagcaactgg 1354287



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>emb|AL451164.13| Human DNA sequence from clone RP11-298E9 on chromosome 10 Contains the
             3' end of the PFKP gene for phosphofructokinase platelet,
             a novel gene (FLJ40226) the PITRM1 gene for pitrilysin
             metalloproteinase 1 (MP1 hMP1 KIAA1104), three novel genes
             and two CpG islands, complete sequence
          Length = 163070

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 2     ggaggacgacagcaactg 19
             ||||||||||||||||||
Sbjct: 49483 ggaggacgacagcaactg 49500



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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 6       gacgacagcaactggccg 23
               ||||||||||||||||||
Sbjct: 2710773 gacgacagcaactggccg 2710756



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>emb|AL117409.1|HSM801061 Homo sapiens mRNA; cDNA DKFZp434G152 (from clone DKFZp434G152)
          Length = 3252

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 2   ggaggacgacagcaactg 19
           ||||||||||||||||||
Sbjct: 174 ggaggacgacagcaactg 157



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>emb|CR749279.1| Homo sapiens mRNA; cDNA DKFZp686F08225 (from clone DKFZp686F08225)
          Length = 5777

 Score = 36.2 bits (18), Expect = 3.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 2    ggaggacgacagcaactg 19
            ||||||||||||||||||
Sbjct: 2011 ggaggacgacagcaactg 1994


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 85,160
Number of Sequences: 3902068
Number of extensions: 85160
Number of successful extensions: 19544
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19492
Number of HSP's gapped (non-prelim): 52
length of query: 34
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 14
effective length of database: 17,155,003,908
effective search space: 240170054712
effective search space used: 240170054712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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