| Clone Name | bags17g05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|D88272.1| Hordeum vulgare mRNA for formate dehydrogenase, complete cds Length = 1380 Score = 141 bits (71), Expect = 3e-31 Identities = 78/81 (96%) Strand = Plus / Plus Query: 1 ataacgctcggggcgcaatcatggatacccaggctgctgctgangctngctccagcggtc 60 |||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||| Sbjct: 909 ataacgctcggggcgcaatcatggatacccaggctgttgctgatgcttgctccagcggtc 968 Query: 61 acattgctggatacggaggtg 81 ||||||||||||||||||||| Sbjct: 969 acattgctggatacggaggtg 989
>dbj|AK064610.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-B06, full insert sequence Length = 1872 Score = 60.0 bits (30), Expect = 9e-07 Identities = 58/68 (85%) Strand = Plus / Plus Query: 6 gctcggggcgcaatcatggatacccaggctgctgctgangctngctccagcggtcacatt 65 ||||| || |||||||||||||||||||| | |||||| ||| || |||| |||||| || Sbjct: 1395 gctcgtggagcaatcatggatacccaggcggttgctgacgcttgcgccagtggtcacgtt 1454 Query: 66 gctggata 73 || ||||| Sbjct: 1455 gcaggata 1462
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 56.0 bits (28), Expect = 1e-05 Identities = 53/62 (85%) Strand = Plus / Plus Query: 6 gctcggggcgcaatcatggatacccaggctgctgctgangctngctccagcggtcacatt 65 ||||| || |||||||||||||||||||| | |||||| ||| || |||| |||||| || Sbjct: 16463470 gctcgtggagcaatcatggatacccaggcggttgctgacgcttgcgccagtggtcacgtt 16463529 Query: 66 gc 67 || Sbjct: 16463530 gc 16463531 Score = 46.1 bits (23), Expect = 0.014 Identities = 51/61 (83%) Strand = Plus / Plus Query: 1 ataacgctcggggcgcaatcatggatacccaggctgctgctgangctngctccagcggtc 60 |||| ||||| || |||||||||||||||||||| | ||| || ||| |||| || |||| Sbjct: 16433475 ataatgctcgaggagcaatcatggatacccaggcggttgcagacgcttgctctagtggtc 16433534 Query: 61 a 61 | Sbjct: 16433535 a 16433535
>dbj|AP005656.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0404G03 Length = 135225 Score = 56.0 bits (28), Expect = 1e-05 Identities = 53/62 (85%) Strand = Plus / Plus Query: 6 gctcggggcgcaatcatggatacccaggctgctgctgangctngctccagcggtcacatt 65 ||||| || |||||||||||||||||||| | |||||| ||| || |||| |||||| || Sbjct: 72788 gctcgtggagcaatcatggatacccaggcggttgctgacgcttgcgccagtggtcacgtt 72847 Query: 66 gc 67 || Sbjct: 72848 gc 72849 Score = 46.1 bits (23), Expect = 0.014 Identities = 51/61 (83%) Strand = Plus / Plus Query: 1 ataacgctcggggcgcaatcatggatacccaggctgctgctgangctngctccagcggtc 60 |||| ||||| || |||||||||||||||||||| | ||| || ||| |||| || |||| Sbjct: 42793 ataatgctcgaggagcaatcatggatacccaggcggttgcagacgcttgctctagtggtc 42852 Query: 61 a 61 | Sbjct: 42853 a 42853
>gb|BT016309.1| Zea mays clone Contig142 mRNA sequence Length = 1507 Score = 48.1 bits (24), Expect = 0.003 Identities = 27/28 (96%) Strand = Plus / Plus Query: 54 agcggtcacattgctggatacggaggtg 81 ||||||||||||||||||||||| |||| Sbjct: 987 agcggtcacattgctggatacggtggtg 1014
>gb|AF439732.1|AF439732 Zea mays formate dehydrogenase mRNA, partial cds Length = 597 Score = 48.1 bits (24), Expect = 0.003 Identities = 27/28 (96%) Strand = Plus / Plus Query: 54 agcggtcacattgctggatacggaggtg 81 ||||||||||||||||||||||| |||| Sbjct: 538 agcggtcacattgctggatacggtggtg 565
>gb|AY111955.1| Zea mays CL15209_1 mRNA sequence Length = 1667 Score = 48.1 bits (24), Expect = 0.003 Identities = 27/28 (96%) Strand = Plus / Plus Query: 54 agcggtcacattgctggatacggaggtg 81 ||||||||||||||||||||||| |||| Sbjct: 992 agcggtcacattgctggatacggtggtg 1019
>dbj|AP003518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0008F02 Length = 139655 Score = 46.1 bits (23), Expect = 0.014 Identities = 51/61 (83%) Strand = Plus / Plus Query: 1 ataacgctcggggcgcaatcatggatacccaggctgctgctgangctngctccagcggtc 60 |||| ||||| || |||||||||||||||||||| | ||| || ||| |||| || |||| Sbjct: 110038 ataatgctcgaggagcaatcatggatacccaggcggttgcagacgcttgctctagtggtc 110097 Query: 61 a 61 | Sbjct: 110098 a 110098
>dbj|AK104788.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-E04, full insert sequence Length = 1637 Score = 46.1 bits (23), Expect = 0.014 Identities = 51/61 (83%) Strand = Plus / Plus Query: 1 ataacgctcggggcgcaatcatggatacccaggctgctgctgangctngctccagcggtc 60 |||| ||||| || |||||||||||||||||||| | ||| || ||| |||| || |||| Sbjct: 921 ataatgctcgaggagcaatcatggatacccaggcggttgcagacgcttgctctagtggtc 980 Query: 61 a 61 | Sbjct: 981 a 981
>dbj|AK065872.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013048A01, full insert sequence Length = 1648 Score = 46.1 bits (23), Expect = 0.014 Identities = 51/61 (83%) Strand = Plus / Plus Query: 1 ataacgctcggggcgcaatcatggatacccaggctgctgctgangctngctccagcggtc 60 |||| ||||| || |||||||||||||||||||| | ||| || ||| |||| || |||| Sbjct: 932 ataatgctcgaggagcaatcatggatacccaggcggttgcagacgcttgctctagtggtc 991 Query: 61 a 61 | Sbjct: 992 a 992
>dbj|AB019533.1| Oryza sativa mRNA for Nad-dependent formate dehydrogenase, complete cds Length = 1449 Score = 46.1 bits (23), Expect = 0.014 Identities = 51/61 (83%) Strand = Plus / Plus Query: 1 ataacgctcggggcgcaatcatggatacccaggctgctgctgangctngctccagcggtc 60 |||| ||||| || |||||||||||||||||||| | ||| || ||| |||| || |||| Sbjct: 935 ataatgctcgaggagcaatcatggatacccaggcggttgcagacgcttgctctagtggtc 994 Query: 61 a 61 | Sbjct: 995 a 995
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 38.2 bits (19), Expect = 3.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 49 gctccagcggtcacattgc 67 ||||||||||||||||||| Sbjct: 4231324 gctccagcggtcacattgc 4231342
>gb|AC024937.21| Homo sapiens 3 BAC RP11-480A16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 157198 Score = 38.2 bits (19), Expect = 3.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 gatacccaggctgctgctg 42 ||||||||||||||||||| Sbjct: 151018 gatacccaggctgctgctg 151036 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 489,649 Number of Sequences: 3902068 Number of extensions: 489649 Number of successful extensions: 30587 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30555 Number of HSP's gapped (non-prelim): 32 length of query: 81 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 60 effective length of database: 17,151,101,840 effective search space: 1029066110400 effective search space used: 1029066110400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)