>SLOU_DROME (P22807) Homeobox protein slou (S59/2) (Protein slouch) (Homeobox|
           protein NK-1)
          Length = 659

 Score = 37.0 bits (84), Expect = 0.044
 Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 5/120 (4%)
 Frame = -2

Query: 427 SSASKPRRWTEALLTYTATRPRPLRRPWPSCIXXXXXXXXXXXXRFGRTLQHLNPRQHQP 248
           SS ++ R+  E        RP PL+ P  + +                  QH++  QHQ 
Sbjct: 151 SSPAQQRKLLELNAVRHLARPEPLQHPH-AALLQQHPHLLQNPQFLAAAQQHMHHHQHQH 209

Query: 247 HHHL*VVAHQHWQQR-----CPQIHQPTSPVLHLLGSHRRRGARSSPCTTCPGSRGSSPA 83
           H H    AH H  Q       P  H   S V HL        A  SP T+ P S  +SPA
Sbjct: 210 HQH---PAHPHSHQHPHPHPHPHPHPHPSAVFHLRAPSSSSTAPPSPATS-PLSPPTSPA 265

>NR4A3_MOUSE (Q9QZB6) Orphan nuclear receptor NR4A3 (Orphan nuclear receptor|
           TEC) (Translocated in extraskeletal chondrosarcoma)
          Length = 627

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -2

Query: 277 QHLNPRQHQPHHHL*VVAHQHWQQRCPQIHQPTSPVLHLLGSHRRRGARSSPCT-TCPG 104
           +H     H  HHH     H H QQ+ P I  P+ P   +L S      +S P T T PG
Sbjct: 95  EHGYHHHHHHHHH-----HHHHQQQQPSIPPPSGPEDEVLPSTSMYFKQSPPSTPTTPG 148

>VG06_BPT4 (P19060) Baseplate structural protein Gp6 (Baseplate wedge protein|
           6)
          Length = 660

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +1

Query: 124 VKIERRDGGESQVGGARGMS-ADEFVGSAAASVDEQPLTDDDEVGAAVGSDAEEFGRNVK 300
           + IE      +   GA G S AD        +++E P  D D VGA  G D E+  R ++
Sbjct: 268 IVIEYISTNGADANGAVGFSYADTLTNITVININENPNDDPDFVGADGGGDPEDIER-IR 326

Query: 301 EAAEILRKARE-CMMA 345
           E   I R+ ++ C+ A
Sbjct: 327 ELGTIKRETQQRCVTA 342

>NR4A3_RAT (P51179) Orphan nuclear receptor NR4A3 (Nuclear hormone receptor|
           NOR-1/NOR-2) (Neuron-derived orphan receptor 1/2)
          Length = 628

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -2

Query: 277 QHLNPRQHQPHHHL*VVAHQHWQQRCPQIHQPTSPVLHLLGSHRRRGARSSPCT-TCPG 104
           +H     H  HHH     H H QQ+ P I  P+ P   +L S      +S P T T PG
Sbjct: 95  EHGYHHHHHHHHH----HHHHHQQQQPSIPPPSGPEDEVLPSTSMYFKQSPPSTPTTPG 149

>CI090_CHICK (Q5ZI27) Protein C9orf90 homolog|
          Length = 330

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 100 EIRDRSYRVKIERRDGGESQVGGARGMSADEFVGSAAASVDEQPL 234
           E+R +  +V+     GGESQ GG  G   ++  G+ AA V   P+
Sbjct: 82  EVRRKVAQVRAAMEGGGESQNGGGAGTEGEDPTGATAAPVILTPM 126

>CWC25_YARLI (Q6C1V6) Pre-mRNA-splicing factor CWC25|
          Length = 561

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
 Frame = +1

Query: 25  VRSDGRFEEGGRFAAAESSLLERTLEIR--------DRSYRVKIERRDGGESQVGGARGM 180
           V+S GR    GR +   S+  ER+L  R        DR YR +   RD      GG +G 
Sbjct: 309 VQSSGR--SSGRSSVRSSARSERSLRDRSRSRDPDRDRDYRSRSRERDS-----GGGQGS 361

Query: 181 SADEFVGSAAASVDEQ 228
              + VG+  + +DE+
Sbjct: 362 DLSDEVGNGRSVLDER 377

>SH3K1_HUMAN (Q96B97) SH3-domain kinase-binding protein 1 (Cbl-interacting|
           protein of 85 kDa) (Human Src-family kinase-binding
           protein 1) (HSB-1) (CD2-binding protein 3) (CD2BP3)
          Length = 665

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 130 IERRDGG--ESQVGGARGMSADEFVGSAAASVDEQPLTD 240
           I + DGG  E Q+ G RG+  D FV      + + PLT+
Sbjct: 29  IRKEDGGWWEGQINGRRGLFPDNFVREIKKEMKKDPLTN 67

>DWRF8_MAIZE (Q9ST48) DELLA protein DWARF8 (Protein dwarf-8)|
          Length = 630

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 25/74 (33%), Positives = 37/74 (50%)
 Frame = +1

Query: 124 VKIERRDGGESQVGGARGMSADEFVGSAAASVDEQPLTDDDEVGAAVGSDAEEFGRNVKE 303
           +K E +D G S  GG  G S D+ + +AAA   EQ   D DE+ AA+G           +
Sbjct: 1   MKREYQDAGGS--GGDMGSSKDKMM-AAAAGAGEQEEEDVDELLAALGYKVRS-----SD 52

Query: 304 AAEILRKARECMMA 345
            A++ +K  +  MA
Sbjct: 53  MADVAQKLEQLEMA 66

>FRIZ4_DROME (Q9NBW1) Protein frizzled-4 precursor (dFz4)|
          Length = 705

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -2

Query: 289 GRTLQHLNPRQHQPHHHL*VVAHQHWQQRCPQIHQPTSPVLHLLGSHR 146
           GR++ H   ++H PHHH       H QQ+  Q H   +   H   SHR
Sbjct: 634 GRSVHH--QQRHSPHHH------HHQQQQHHQFHPHHNHQHHSTSSHR 673

>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 473

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 292 FGRTLQHLNPRQHQPHHHL*VVAHQHWQQRCPQIHQPTSPV 170
           F    Q+  PR+H  HHH       H QQ+  Q  QP  P+
Sbjct: 7   FNLEKQNHTPRKHHQHHH----QQHHQQQQQQQQQQPPPPI 43

>VE1_HPV66 (Q80957) Replication protein E1 (EC 3.6.1.-) (ATP-dependent|
           helicase E1)
          Length = 630

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +1

Query: 4   PLSEGGRVRSDGRFEEGGRFAAAESSLLERTLEIRDRSYRVKIERRDG-GESQVGGARGM 180
           PLS+    ++  R E   R   +E S    TLE  + S +V+ E+ +G G SQ GG++  
Sbjct: 93  PLSDISNQQTVYREEVKRRLILSEDSGYGNTLETLETSQQVEYEKGNGCGSSQNGGSQNS 152

Query: 181 SADE 192
           +  E
Sbjct: 153 NCSE 156

>TAF6L_MOUSE (Q8R2K4) TAF6-like RNA polymerase II p300/CBP-associated|
           factor-associated factor 65 kDa subunit 6L
           (PCAF-associated factor 65 alpha) (PAF65-alpha)
          Length = 616

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 20/52 (38%), Positives = 25/52 (48%)
 Frame = -3

Query: 174 PCSTYLALTAVAALDLHPVRPVPDLEGPLQQRGLGGGEPAAFFKATVAPHPA 19
           PC   LA TA AA +  P+  V    G  +Q+G G G    F K+  AP  A
Sbjct: 501 PCGGTLA-TATAASESRPLPRVHRARGAPRQQGPGAGTRDVFQKSRFAPRGA 551

>LIN59_CAEEL (O44757) Protein lin-59 (Abnormal cell lineage protein 59)|
          Length = 1312

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 268 NPRQHQPHHHL*VVAHQHWQQRCPQIHQ 185
           N R  + HHH    +HQ+ QQ   Q+HQ
Sbjct: 14  NARSDEQHHHPSTSSHQYQQQGARQMHQ 41

>TIF1G_HUMAN (Q9UPN9) Transcription intermediary factor 1-gamma (TIF1-gamma)|
           (RET-fused gene 7 protein) (Rfg7 protein) (Tripartite
           motif protein 33)
          Length = 1127

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query: 133 ERRDGGESQVGGARGMSADEFVGSA--AASVDEQPLT-----DDDEVGAAVGSDAEEFG 288
           E + GGE++ GG    SA    G+A  AA   E PLT     +++E G   G++    G
Sbjct: 3   ENKGGGEAESGGGGSGSAPVTAGAAGPAAQEAEPPLTAVLVEEEEEEGGRAGAEGGAAG 61

>GBF1_ARATH (P42774) G-box-binding factor 1 (AtbZIP41)|
          Length = 315

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -3

Query: 123 PVRPVPDLEGPLQQRGLGGGEPAAFFKATV---APHP 22
           P  P PD +  +Q    GGG P  FF + V   +PHP
Sbjct: 23  PPTPYPDWQNSMQAYYGGGGTPNPFFPSPVGSPSPHP 59

>TMAP1_HUMAN (P84157) Transmembrane anchor protein 1|
          Length = 204

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
 Frame = -3

Query: 300 LDVSAELFSI*THGSTNLIIICKWLLINTGSSAAHKFISRHPPCSTYLALTAVAALDLHP 121
           ++  AEL +     +T L ++  WLL+  G++A+ +  +R PP     A    A     P
Sbjct: 1   MEAPAELLAALPALATALALLLAWLLVRRGAAASPE-PARAPPEPAPPAEATGAPAPSRP 59

Query: 120 VRPVPDL-----EGPLQQRGLGG-GEPA 55
             P P       E P +  GLG  GEPA
Sbjct: 60  CAPEPAASPAGPEEPGEPAGLGELGEPA 87

>C556_AGRTB (P00139) Cytochrome c-556 (Cytochrome c556)|
          Length = 122

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +1

Query: 127 KIERRDGGESQVGGARGMSADEFVGSAAASVDEQPLTDDDEVGAAV---GSDAEEF 285
           ++E+R+G   Q+GGA G         AA S  E+P  D D V AAV   G++A+ F
Sbjct: 3   EVEKREGMMKQIGGAMG-------SLAAISKGEKPF-DADTVKAAVTTIGTNAKAF 50

>SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog|
          Length = 713

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 11/114 (9%)
 Frame = +1

Query: 4   PLSEGGRVRSDGRFEEGGRFAAAESSLLERT-------LEIRDRSYRVKIERRDGGESQV 162
           PL E   ++  G+ +E     AAE + +E T        E  D+   +K       E + 
Sbjct: 501 PLEESEEIKGKGKGKEEDVNEAAEKAKVEATEKTKKAAKEAADKEAELKKAAEKAAEEKA 560

Query: 163 GG----ARGMSADEFVGSAAASVDEQPLTDDDEVGAAVGSDAEEFGRNVKEAAE 312
                 A     +E    AAA   E+ L  ++   AA  ++ E+      EAA+
Sbjct: 561 KAEKKAAEAREKEEKEAKAAAKAKEEELKKEEVAKAAAKAEEEQKATAAAEAAK 614


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,582,258
Number of Sequences: 219361
Number of extensions: 1648164
Number of successful extensions: 6426
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 6012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6399
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5253413348
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)