ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags16p23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y2135_LACPL (Q88VC6) UPF0298 protein lp_2135 32 0.92
2MSP1_PLAF3 (P19598) Merozoite surface protein 1 precursor (Meroz... 32 1.2
3CHBG_YERPE (Q8ZDA6) UPF0249 protein chbG 30 4.5
4CHBG_SERMA (Q8L3B9) UPF0249 protein chbG 30 5.9

>Y2135_LACPL (Q88VC6) UPF0298 protein lp_2135|
          Length = 100

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = -3

Query: 522 LDFVIYMNQKC*AILHSIRQIKQISSIDHGIAICMSNKLYFWALVVSLSHLPCETSKIKP 343
           +DF +   +     +HS++Q++Q+     G+    S K ++  L +  S +P  T+KIK 
Sbjct: 1   MDFTVKPRRSLIVYMHSMKQVRQLKRF--GLIQYQSRKEHYVVLYMDESQIPAATTKIKK 58

Query: 342 CIF 334
             F
Sbjct: 59  LNF 61



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>MSP1_PLAF3 (P19598) Merozoite surface protein 1 precursor (Merozoite surface|
            antigens) (PMMSA) (P190)
          Length = 1682

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
 Frame = -2

Query: 349  KTMHLPFLTDSTRTSSKYCHPKATYSPISLNPTLPALYNMTFKINRKKNC----YLEEIP 182
            KT++L  L D   T S  CH     S  S++  L  +YN+T + N  K+C     L  I 
Sbjct: 760  KTVYLKKL-DEFLTKSYICHKYILVSNSSMDQKLLEVYNLTPEENELKSCDRLDLLFNIQ 818

Query: 181  NKIP----L*DHSFNEKQTLYLK 125
            N IP    L D   N+ Q L+ +
Sbjct: 819  NNIPAMYSLYDSMNNDLQHLFFE 841



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>CHBG_YERPE (Q8ZDA6) UPF0249 protein chbG|
          Length = 253

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 334 PFLTDSTRTSSKYCHPKATYSPISLNPTL-PALYNMTFKINRKKNC 200
           P   D T  +S YC+P+ T   I  +PTL PA+    +++    +C
Sbjct: 208 PAFIDQTLMTSGYCYPRLTELAILTSPTLKPAIAQRGYRLGSFLDC 253



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>CHBG_SERMA (Q8L3B9) UPF0249 protein chbG|
          Length = 253

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 334 PFLTDSTRTSSKYCHPKATYSPISLNPTLPA 242
           P   D+T   SKYCHP+     +   PTL A
Sbjct: 208 PAFLDATILQSKYCHPRLVELDVLTAPTLKA 238


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,233,160
Number of Sequences: 219361
Number of extensions: 1454695
Number of successful extensions: 3111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3111
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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