| Clone Name | bags16p23 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | Y2135_LACPL (Q88VC6) UPF0298 protein lp_2135 | 32 | 0.92 | 2 | MSP1_PLAF3 (P19598) Merozoite surface protein 1 precursor (Meroz... | 32 | 1.2 | 3 | CHBG_YERPE (Q8ZDA6) UPF0249 protein chbG | 30 | 4.5 | 4 | CHBG_SERMA (Q8L3B9) UPF0249 protein chbG | 30 | 5.9 |
|---|
>Y2135_LACPL (Q88VC6) UPF0298 protein lp_2135| Length = 100 Score = 32.3 bits (72), Expect = 0.92 Identities = 17/63 (26%), Positives = 32/63 (50%) Frame = -3 Query: 522 LDFVIYMNQKC*AILHSIRQIKQISSIDHGIAICMSNKLYFWALVVSLSHLPCETSKIKP 343 +DF + + +HS++Q++Q+ G+ S K ++ L + S +P T+KIK Sbjct: 1 MDFTVKPRRSLIVYMHSMKQVRQLKRF--GLIQYQSRKEHYVVLYMDESQIPAATTKIKK 58 Query: 342 CIF 334 F Sbjct: 59 LNF 61
>MSP1_PLAF3 (P19598) Merozoite surface protein 1 precursor (Merozoite surface| antigens) (PMMSA) (P190) Length = 1682 Score = 32.0 bits (71), Expect = 1.2 Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 8/83 (9%) Frame = -2 Query: 349 KTMHLPFLTDSTRTSSKYCHPKATYSPISLNPTLPALYNMTFKINRKKNC----YLEEIP 182 KT++L L D T S CH S S++ L +YN+T + N K+C L I Sbjct: 760 KTVYLKKL-DEFLTKSYICHKYILVSNSSMDQKLLEVYNLTPEENELKSCDRLDLLFNIQ 818 Query: 181 NKIP----L*DHSFNEKQTLYLK 125 N IP L D N+ Q L+ + Sbjct: 819 NNIPAMYSLYDSMNNDLQHLFFE 841
>CHBG_YERPE (Q8ZDA6) UPF0249 protein chbG| Length = 253 Score = 30.0 bits (66), Expect = 4.5 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = -2 Query: 334 PFLTDSTRTSSKYCHPKATYSPISLNPTL-PALYNMTFKINRKKNC 200 P D T +S YC+P+ T I +PTL PA+ +++ +C Sbjct: 208 PAFIDQTLMTSGYCYPRLTELAILTSPTLKPAIAQRGYRLGSFLDC 253
>CHBG_SERMA (Q8L3B9) UPF0249 protein chbG| Length = 253 Score = 29.6 bits (65), Expect = 5.9 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -2 Query: 334 PFLTDSTRTSSKYCHPKATYSPISLNPTLPA 242 P D+T SKYCHP+ + PTL A Sbjct: 208 PAFLDATILQSKYCHPRLVELDVLTAPTLKA 238 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,233,160 Number of Sequences: 219361 Number of extensions: 1454695 Number of successful extensions: 3111 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 3049 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3111 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4488201198 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)