ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags17e19 |
|---|---|
| Clone Library Name | barley_pub |
>R13AD_ARATH (Q9FKC0) 60S ribosomal protein L13a-4| Length = 206 Score = 147 bits (370), Expect(2) = 2e-44 Identities = 68/82 (82%), Positives = 72/82 (87%) Frame = +2 Query: 122 IVXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILW 301 I KEL NGQ VV+VRCEEIC+SGGL RQKMKY+RFLRKRMNTKP HGPIHFRAP KI W Sbjct: 27 ITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFW 86 Query: 302 RTIRGMIPHKTXRGEAALARLK 367 RT+RGMIPHKT RG AALARLK Sbjct: 87 RTVRGMIPHKTKRGAAALARLK 108 Score = 50.4 bits (119), Expect(2) = 2e-44 Identities = 22/24 (91%), Positives = 24/24 (100%) Frame = +1 Query: 43 MVSGSGVCAKRVVVDARHHMLGRL 114 MVSGSG+C+KRVVVDARHHMLGRL Sbjct: 1 MVSGSGICSKRVVVDARHHMLGRL 24
>R13AB_ARATH (Q9LRX8) 60S ribosomal protein L13a-2| Length = 206 Score = 149 bits (375), Expect(2) = 2e-44 Identities = 69/82 (84%), Positives = 73/82 (89%) Frame = +2 Query: 122 IVXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILW 301 I+ KEL NGQ VVVVRCEEIC+SGGL RQKMKY+RFLRKRMNTKP HGPIHFRAP KI W Sbjct: 27 IIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFW 86 Query: 302 RTIRGMIPHKTXRGEAALARLK 367 RT+RGMIPHKT RG AALARLK Sbjct: 87 RTVRGMIPHKTKRGAAALARLK 108 Score = 48.5 bits (114), Expect(2) = 2e-44 Identities = 21/24 (87%), Positives = 23/24 (95%) Frame = +1 Query: 43 MVSGSGVCAKRVVVDARHHMLGRL 114 MVSGSG+C+KRVVVDARHHM GRL Sbjct: 1 MVSGSGICSKRVVVDARHHMCGRL 24
>R13AA_ARATH (Q9SFU1) 60S ribosomal protein L13a-1| Length = 206 Score = 144 bits (364), Expect(2) = 4e-44 Identities = 66/82 (80%), Positives = 72/82 (87%) Frame = +2 Query: 122 IVXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILW 301 +V K+L NGQ +VVVRCEEIC+SGGL RQKMKY+RFLRKRMNTKP HGPIHFRAP KI W Sbjct: 27 VVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFW 86 Query: 302 RTIRGMIPHKTXRGEAALARLK 367 RT+RGMIPHKT RG ALARLK Sbjct: 87 RTVRGMIPHKTKRGANALARLK 108 Score = 51.6 bits (122), Expect(2) = 4e-44 Identities = 23/24 (95%), Positives = 24/24 (100%) Frame = +1 Query: 43 MVSGSGVCAKRVVVDARHHMLGRL 114 MVSGSG+CAKRVVVDARHHMLGRL Sbjct: 1 MVSGSGICAKRVVVDARHHMLGRL 24
>R13AC_ARATH (Q9SVR0) 60S ribosomal protein L13a-3| Length = 206 Score = 145 bits (367), Expect(2) = 5e-44 Identities = 68/79 (86%), Positives = 71/79 (89%) Frame = +2 Query: 131 KELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILWRTI 310 KEL NGQ VVVVRCEEIC+SGGL RQKMKY+RFLRKRMNTKP HGPIHFRAP KI WRT+ Sbjct: 30 KELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTV 89 Query: 311 RGMIPHKTXRGEAALARLK 367 RGMIPHKT RG AALARLK Sbjct: 90 RGMIPHKTKRGAAALARLK 108 Score = 50.1 bits (118), Expect(2) = 5e-44 Identities = 22/24 (91%), Positives = 23/24 (95%) Frame = +1 Query: 43 MVSGSGVCAKRVVVDARHHMLGRL 114 MVSGSG+CAKRVVVD RHHMLGRL Sbjct: 1 MVSGSGICAKRVVVDGRHHMLGRL 24
>RL13A_PICMA (O65055) 60S ribosomal protein L13a| Length = 206 Score = 145 bits (365), Expect(2) = 1e-43 Identities = 69/82 (84%), Positives = 73/82 (89%) Frame = +2 Query: 122 IVXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILW 301 I+ KEL +GQ VVVVRCEEICMSGGL RQKMKYLRFLRKRMNTKP HGPIHFRAP +ILW Sbjct: 27 ILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRILW 86 Query: 302 RTIRGMIPHKTXRGEAALARLK 367 RTIRGMIPHKT RG AALA L+ Sbjct: 87 RTIRGMIPHKTKRGAAALATLR 108 Score = 49.7 bits (117), Expect(2) = 1e-43 Identities = 22/24 (91%), Positives = 23/24 (95%) Frame = +1 Query: 43 MVSGSGVCAKRVVVDARHHMLGRL 114 MVSGSG+CAK VVVDARHHMLGRL Sbjct: 1 MVSGSGICAKEVVVDARHHMLGRL 24
>RL13A_LUPLU (O49885) 60S ribosomal protein L13a| Length = 205 Score = 135 bits (340), Expect(2) = 2e-40 Identities = 67/82 (81%), Positives = 70/82 (85%) Frame = +2 Query: 122 IVXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILW 301 IV KEL NGQ VV+VR EEIC+SGGL RQKMKYLRFLRKRMNTKP HGPIH AP KI W Sbjct: 27 IVAKELLNGQKVVIVRSEEICISGGLVRQKMKYLRFLRKRMNTKPSHGPIHC-APSKIFW 85 Query: 302 RTIRGMIPHKTXRGEAALARLK 367 RT+RGMIPHKT RGE ALARLK Sbjct: 86 RTVRGMIPHKTKRGEHALARLK 107 Score = 48.1 bits (113), Expect(2) = 2e-40 Identities = 22/24 (91%), Positives = 23/24 (95%) Frame = +1 Query: 43 MVSGSGVCAKRVVVDARHHMLGRL 114 MVSGSG+ AKRVVVDARHHMLGRL Sbjct: 1 MVSGSGIAAKRVVVDARHHMLGRL 24
>RL13A_CYAPA (P93099) 60S ribosomal protein L13a| Length = 200 Score = 114 bits (284), Expect(2) = 6e-27 Identities = 55/81 (67%), Positives = 62/81 (76%) Frame = +2 Query: 125 VXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILWR 304 + KEL NGQ VV VR EEI +SG L R K+K+ FL+KRMNT P GP HFR+P +ILWR Sbjct: 22 LAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNTNPRRGPFHFRSPARILWR 81 Query: 305 TIRGMIPHKTXRGEAALARLK 367 TIRGMIPHKT RG AAL RLK Sbjct: 82 TIRGMIPHKTPRGAAALERLK 102 Score = 24.6 bits (52), Expect(2) = 6e-27 Identities = 11/15 (73%), Positives = 12/15 (80%) Frame = +1 Query: 70 KRVVVDARHHMLGRL 114 K VVVD R H+LGRL Sbjct: 4 KVVVVDCRGHLLGRL 18
>RL13A_RAT (P35427) 60S ribosomal protein L13a| Length = 202 Score = 115 bits (289), Expect(2) = 1e-26 Identities = 54/82 (65%), Positives = 63/82 (76%) Frame = +2 Query: 122 IVXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILW 301 IV K++ G+ VVVVRCE I +SG R K+KYL FLRKRMNT P GP HFRAP +I W Sbjct: 21 IVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFW 80 Query: 302 RTIRGMIPHKTXRGEAALARLK 367 RT+RGM+PHKT RG+AAL RLK Sbjct: 81 RTVRGMLPHKTKRGQAALERLK 102 Score = 21.9 bits (45), Expect(2) = 1e-26 Identities = 8/13 (61%), Positives = 11/13 (84%) Frame = +1 Query: 76 VVVDARHHMLGRL 114 +V+D R H+LGRL Sbjct: 6 LVLDGRSHLLGRL 18
>RL13A_MOUSE (P19253) 60S ribosomal protein L13a (Transplantation antigen P198)| (Tum-P198 antigen) Length = 202 Score = 115 bits (289), Expect(2) = 1e-26 Identities = 54/82 (65%), Positives = 63/82 (76%) Frame = +2 Query: 122 IVXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILW 301 IV K++ G+ VVVVRCE I +SG R K+KYL FLRKRMNT P GP HFRAP +I W Sbjct: 21 IVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFW 80 Query: 302 RTIRGMIPHKTXRGEAALARLK 367 RT+RGM+PHKT RG+AAL RLK Sbjct: 81 RTVRGMLPHKTKRGQAALERLK 102 Score = 21.6 bits (44), Expect(2) = 1e-26 Identities = 8/13 (61%), Positives = 11/13 (84%) Frame = +1 Query: 76 VVVDARHHMLGRL 114 +V+D R H+LGRL Sbjct: 6 LVLDGRGHLLGRL 18
>RL13A_BOVIN (Q3SZ90) 60S ribosomal protein L13a| Length = 202 Score = 115 bits (289), Expect(2) = 1e-26 Identities = 54/82 (65%), Positives = 63/82 (76%) Frame = +2 Query: 122 IVXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILW 301 IV K++ G+ VVVVRCE I +SG R K+KYL FLRKRMNT P GP HFRAP +I W Sbjct: 21 IVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFW 80 Query: 302 RTIRGMIPHKTXRGEAALARLK 367 RT+RGM+PHKT RG+AAL RLK Sbjct: 81 RTVRGMLPHKTKRGQAALERLK 102 Score = 21.6 bits (44), Expect(2) = 1e-26 Identities = 8/13 (61%), Positives = 11/13 (84%) Frame = +1 Query: 76 VVVDARHHMLGRL 114 +V+D R H+LGRL Sbjct: 6 LVLDGRGHLLGRL 18
>RL13A_PONPY (Q5RA38) 60S ribosomal protein L13a| Length = 202 Score = 115 bits (288), Expect(2) = 2e-26 Identities = 54/82 (65%), Positives = 63/82 (76%) Frame = +2 Query: 122 IVXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILW 301 IV K++ G+ VVVVRCE I +SG R K+KYL FLRKRMNT P GP HFRAP +I W Sbjct: 21 IVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSPSRGPYHFRAPSRIFW 80 Query: 302 RTIRGMIPHKTXRGEAALARLK 367 RT+RGM+PHKT RG+AAL RLK Sbjct: 81 RTVRGMLPHKTKRGQAALDRLK 102 Score = 21.6 bits (44), Expect(2) = 2e-26 Identities = 8/13 (61%), Positives = 11/13 (84%) Frame = +1 Query: 76 VVVDARHHMLGRL 114 +V+D R H+LGRL Sbjct: 6 LVLDGRGHLLGRL 18
>RL13A_MACFA (Q4R8Z2) 60S ribosomal protein L13a| Length = 202 Score = 115 bits (288), Expect(2) = 2e-26 Identities = 54/82 (65%), Positives = 63/82 (76%) Frame = +2 Query: 122 IVXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILW 301 IV K++ G+ VVVVRCE I +SG R K+KYL FLRKRMNT P GP HFRAP +I W Sbjct: 21 IVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFW 80 Query: 302 RTIRGMIPHKTXRGEAALARLK 367 RT+RGM+PHKT RG+AAL RLK Sbjct: 81 RTVRGMLPHKTKRGQAALDRLK 102 Score = 21.6 bits (44), Expect(2) = 2e-26 Identities = 8/13 (61%), Positives = 11/13 (84%) Frame = +1 Query: 76 VVVDARHHMLGRL 114 +V+D R H+LGRL Sbjct: 6 LVLDGRGHLLGRL 18
>RL13A_HUMAN (P40429) 60S ribosomal protein L13a (23 kDa highly basic protein)| Length = 202 Score = 115 bits (288), Expect(2) = 2e-26 Identities = 54/82 (65%), Positives = 63/82 (76%) Frame = +2 Query: 122 IVXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILW 301 IV K++ G+ VVVVRCE I +SG R K+KYL FLRKRMNT P GP HFRAP +I W Sbjct: 21 IVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFW 80 Query: 302 RTIRGMIPHKTXRGEAALARLK 367 RT+RGM+PHKT RG+AAL RLK Sbjct: 81 RTVRGMLPHKTKRGQAALDRLK 102 Score = 21.6 bits (44), Expect(2) = 2e-26 Identities = 8/13 (61%), Positives = 11/13 (84%) Frame = +1 Query: 76 VVVDARHHMLGRL 114 +V+D R H+LGRL Sbjct: 6 LVLDGRGHLLGRL 18
>RL13A_PIG (Q95307) 60S ribosomal protein L13a (Fragment)| Length = 137 Score = 115 bits (288), Expect(2) = 2e-26 Identities = 54/82 (65%), Positives = 63/82 (76%) Frame = +2 Query: 122 IVXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILW 301 IV K++ G+ VVVVRCE I +SG R K+KYL FLRKRMNT P GP HFRAP +I W Sbjct: 18 IVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFW 77 Query: 302 RTIRGMIPHKTXRGEAALARLK 367 RT+RGM+PHKT RG+AAL RLK Sbjct: 78 RTVRGMLPHKTKRGQAALDRLK 99 Score = 21.6 bits (44), Expect(2) = 2e-26 Identities = 8/13 (61%), Positives = 11/13 (84%) Frame = +1 Query: 76 VVVDARHHMLGRL 114 +V+D R H+LGRL Sbjct: 3 LVLDGRGHLLGRL 15
>RL13A_SPOFR (Q962U0) 60S ribosomal protein L13A| Length = 204 Score = 110 bits (275), Expect(2) = 3e-26 Identities = 49/82 (59%), Positives = 61/82 (74%) Frame = +2 Query: 122 IVXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILW 301 ++ K L G VVVVRCE+I +SG R K+K++ FLRKR N P GP HFRAP KILW Sbjct: 24 VIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNVNPARGPFHFRAPSKILW 83 Query: 302 RTIRGMIPHKTXRGEAALARLK 367 +T+RGMIPHKT RG++AL RL+ Sbjct: 84 KTVRGMIPHKTERGKSALRRLR 105 Score = 25.8 bits (55), Expect(2) = 3e-26 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = +1 Query: 55 SGVCAKRVVVDARHHMLGRL 114 +G K +V+D R H+LGRL Sbjct: 2 TGFSNKAIVIDGRGHLLGRL 21
>RL13A_SALTR (Q91487) 60S ribosomal protein L13a (Transplantation antigen P198| homolog) (Fragment) Length = 189 Score = 114 bits (286), Expect = 4e-26 Identities = 54/82 (65%), Positives = 61/82 (74%) Frame = +2 Query: 122 IVXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILW 301 IV E+ G VVVVRCE I +SG R K+KYL FLRKRMNT P GP HFRAP +I W Sbjct: 8 IVANEVLLGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFW 67 Query: 302 RTIRGMIPHKTXRGEAALARLK 367 RT+RGM+PHKT RG+AAL RLK Sbjct: 68 RTVRGMLPHKTKRGQAALERLK 89
>RL13A_CHOPR (Q8MUR4) 60S ribosomal protein L13A| Length = 204 Score = 108 bits (270), Expect(2) = 1e-25 Identities = 48/82 (58%), Positives = 60/82 (73%) Frame = +2 Query: 122 IVXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILW 301 ++ K L G VVVVRCE++ +SG R K+K++ FLRKR N P GP HFRAP KILW Sbjct: 24 VIAKVLLEGNKVVVVRCEQLNISGNFFRNKLKFMSFLRKRCNVNPARGPFHFRAPSKILW 83 Query: 302 RTIRGMIPHKTXRGEAALARLK 367 +T+RGMIPHKT RG+ AL RL+ Sbjct: 84 KTVRGMIPHKTERGKDALRRLR 105 Score = 25.8 bits (55), Expect(2) = 1e-25 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = +1 Query: 55 SGVCAKRVVVDARHHMLGRL 114 +G K +V+D R H+LGRL Sbjct: 2 TGFSNKAIVIDGRGHLLGRL 21
>RL13A_DROME (Q9VNE9) 60S ribosomal protein L13A| Length = 205 Score = 103 bits (256), Expect(2) = 4e-24 Identities = 47/82 (57%), Positives = 59/82 (71%) Frame = +2 Query: 122 IVXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILW 301 +V K L G V VVRCEE+ +SG R K+K+L +LRKR N P GP HFRAP +I + Sbjct: 24 VVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNPARGPFHFRAPSRIFY 83 Query: 302 RTIRGMIPHKTXRGEAALARLK 367 + +RGMIPHKT RG+AALARL+ Sbjct: 84 KAVRGMIPHKTKRGQAALARLR 105 Score = 25.8 bits (55), Expect(2) = 4e-24 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = +1 Query: 55 SGVCAKRVVVDARHHMLGRL 114 +G+ + VV+D R H+LGRL Sbjct: 2 TGLTNRTVVIDGRGHLLGRL 21
>RL13A_CAEEL (Q27389) 60S ribosomal protein L13a| Length = 202 Score = 102 bits (253), Expect(2) = 2e-23 Identities = 47/82 (57%), Positives = 56/82 (68%) Frame = +2 Query: 122 IVXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILW 301 IV K+L G VVV+R EEI +SG R K+KY+ FLRKR N P G H+RAP KI W Sbjct: 23 IVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFW 82 Query: 302 RTIRGMIPHKTXRGEAALARLK 367 RT+RGM+PHKT RG AL L+ Sbjct: 83 RTVRGMLPHKTNRGNEALKNLR 104 Score = 24.6 bits (52), Expect(2) = 2e-23 Identities = 7/19 (36%), Positives = 15/19 (78%) Frame = +1 Query: 58 GVCAKRVVVDARHHMLGRL 114 G+ + +++D ++H+LGRL Sbjct: 2 GLSNRAIIIDGKNHLLGRL 20
>RL16B_SCHPO (O42991) 60S ribosomal protein L16-B| Length = 197 Score = 95.9 bits (237), Expect(2) = 1e-21 Identities = 44/82 (53%), Positives = 56/82 (68%) Frame = +2 Query: 122 IVXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILW 301 +V K+L GQ VVVVRCEE+ +SG R K+KYL +LRK P G HFRAP +I Sbjct: 23 VVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQ 82 Query: 302 RTIRGMIPHKTXRGEAALARLK 367 + +RGM+PHKT RG+AAL L+ Sbjct: 83 KAVRGMLPHKTARGQAALEHLQ 104 Score = 24.6 bits (52), Expect(2) = 1e-21 Identities = 10/15 (66%), Positives = 13/15 (86%) Frame = +1 Query: 70 KRVVVDARHHMLGRL 114 K VV+DA+ H+LGRL Sbjct: 6 KVVVIDAKGHLLGRL 20
>RL16A_SCHPO (O42848) 60S ribosomal protein L16-A| Length = 197 Score = 95.9 bits (237), Expect(2) = 1e-21 Identities = 44/82 (53%), Positives = 56/82 (68%) Frame = +2 Query: 122 IVXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILW 301 +V K+L GQ VVVVRCEE+ +SG R K+KYL +LRK P G HFRAP +I Sbjct: 23 VVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQ 82 Query: 302 RTIRGMIPHKTXRGEAALARLK 367 + +RGM+PHKT RG+AAL L+ Sbjct: 83 KAVRGMLPHKTARGQAALEHLQ 104 Score = 24.6 bits (52), Expect(2) = 1e-21 Identities = 10/15 (66%), Positives = 13/15 (86%) Frame = +1 Query: 70 KRVVVDARHHMLGRL 114 K VV+DA+ H+LGRL Sbjct: 6 KVVVIDAKGHLLGRL 20
>RL16_NEUCR (Q9P720) 60S ribosomal protein L16| Length = 202 Score = 95.9 bits (237), Expect(2) = 7e-21 Identities = 47/83 (56%), Positives = 57/83 (68%), Gaps = 1/83 (1%) Frame = +2 Query: 122 IVXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHG-PIHFRAPXKIL 298 IV K+L NGQ +VVVRCE + +SG R K+KY +LRK P G P HFRAP +I Sbjct: 23 IVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLRKMTRYNPTRGGPFHFRAPSRIF 82 Query: 299 WRTIRGMIPHKTXRGEAALARLK 367 ++ +RGMIPHKT RG AAL RLK Sbjct: 83 YKAVRGMIPHKTARGAAALERLK 105 Score = 22.3 bits (46), Expect(2) = 7e-21 Identities = 8/13 (61%), Positives = 11/13 (84%) Frame = +1 Query: 76 VVVDARHHMLGRL 114 VV+D + H+LGRL Sbjct: 8 VVIDGKGHLLGRL 20
>RL16C_SCHPO (O43004) 60S ribosomal protein L16-C| Length = 197 Score = 91.3 bits (225), Expect(2) = 5e-20 Identities = 43/81 (53%), Positives = 53/81 (65%) Frame = +2 Query: 125 VXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILWR 304 V K+L GQ VVVVRCEE+ +SG R K+KYL +LRK P G HFRAP +I + Sbjct: 24 VAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFTK 83 Query: 305 TIRGMIPHKTXRGEAALARLK 367 +RGM+PHKT RG AL L+ Sbjct: 84 AVRGMLPHKTTRGNIALKNLQ 104 Score = 23.9 bits (50), Expect(2) = 5e-20 Identities = 8/15 (53%), Positives = 13/15 (86%) Frame = +1 Query: 70 KRVVVDARHHMLGRL 114 K V++DA+ H++GRL Sbjct: 6 KLVIIDAKGHLMGRL 20
>RL16B_YEAST (P26785) 60S ribosomal protein L16-B (YL15) (RP23)| Length = 197 Score = 90.5 bits (223), Expect(2) = 7e-20 Identities = 43/81 (53%), Positives = 55/81 (67%) Frame = +2 Query: 125 VXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILWR 304 + K++ NGQ +VVVR E + +SG R K+KY FLRK GP HFRAP +IL++ Sbjct: 21 IAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRILYK 80 Query: 305 TIRGMIPHKTXRGEAALARLK 367 IRGM+ HKT RG+AAL RLK Sbjct: 81 AIRGMVSHKTARGKAALERLK 101 Score = 24.3 bits (51), Expect(2) = 7e-20 Identities = 9/13 (69%), Positives = 12/13 (92%) Frame = +1 Query: 76 VVVDARHHMLGRL 114 VV+DA+ H+LGRL Sbjct: 5 VVIDAKDHLLGRL 17
>RL16A_YEAST (P26784) 60S ribosomal protein L16-A (L13A) (RP22)| Length = 198 Score = 93.2 bits (230), Expect(2) = 9e-20 Identities = 44/82 (53%), Positives = 56/82 (68%) Frame = +2 Query: 122 IVXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILW 301 +V K+L NGQ +VVVR EE+ +SG R K+KY FLRK GP HFRAP +I + Sbjct: 21 VVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFY 80 Query: 302 RTIRGMIPHKTXRGEAALARLK 367 + +RGM+ HKT RG+AAL RLK Sbjct: 81 KALRGMVSHKTARGKAALERLK 102 Score = 21.2 bits (43), Expect(2) = 9e-20 Identities = 7/13 (53%), Positives = 11/13 (84%) Frame = +1 Query: 76 VVVDARHHMLGRL 114 VV+D + H++GRL Sbjct: 6 VVIDGKGHLVGRL 18
>RL13_PYRHO (O59300) 50S ribosomal protein L13P| Length = 142 Score = 55.5 bits (132), Expect = 3e-08 Identities = 32/81 (39%), Positives = 43/81 (53%) Frame = +2 Query: 125 VXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILWR 304 V K L G+ VV+V E+ ++G KY + R T P GP + + +I+ R Sbjct: 18 VAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRR 77 Query: 305 TIRGMIPHKTXRGEAALARLK 367 TIRGM+P KT RG A RLK Sbjct: 78 TIRGMLPWKTDRGRKAFRRLK 98
>RL13_PYRAB (Q9V196) 50S ribosomal protein L13P| Length = 142 Score = 55.5 bits (132), Expect = 3e-08 Identities = 32/81 (39%), Positives = 43/81 (53%) Frame = +2 Query: 125 VXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILWR 304 V K L G+ VV+V E+ ++G KY + R T P GP + + +I+ R Sbjct: 18 VAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRR 77 Query: 305 TIRGMIPHKTXRGEAALARLK 367 TIRGM+P KT RG A RLK Sbjct: 78 TIRGMLPWKTDRGRKAFKRLK 98
>RL13_ARCFU (O29137) 50S ribosomal protein L13P| Length = 156 Score = 51.6 bits (122), Expect(2) = 2e-07 Identities = 29/81 (35%), Positives = 43/81 (53%) Frame = +2 Query: 125 VXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILWR 304 + K L NG+ +VVV E+ ++G + M + R+ K GP R P +I R Sbjct: 33 IAKRLLNGERIVVVNAEKAVITGD---KYMVFERYKEKYDRGSKEKGPYFPRHPERIFKR 89 Query: 305 TIRGMIPHKTXRGEAALARLK 367 T+RGM+P K+ RG A RL+ Sbjct: 90 TVRGMLPWKSSRGRDAYRRLR 110 Score = 20.8 bits (42), Expect(2) = 2e-07 Identities = 8/12 (66%), Positives = 10/12 (83%) Frame = +1 Query: 79 VVDARHHMLGRL 114 V+DA H+LGRL Sbjct: 18 VIDASGHILGRL 29
>RLSX_METTH (O26146) Fused L13/S9 ribosomal protein [Includes: 50S ribosomal| protein L13P; 30S ribosomal protein S9P] Length = 282 Score = 50.4 bits (119), Expect = 1e-06 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Frame = +2 Query: 122 IVXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXH-GPIHFRAPXKIL 298 +V K+L G+ V+V+ E+I ++G KY + + + + P GP + R P I Sbjct: 19 VVSKKLLEGEEVIVLNAEKILITGSKEWAYGKYKQRIDRASISNPRRMGPKYPRRPDDIF 78 Query: 299 WRTIRGMIPHKTXRGEAALARLK 367 RT+RGM+P+K +G A LK Sbjct: 79 RRTVRGMLPYKKSKGREAFKGLK 101
>RL13_HALMA (P29198) 50S ribosomal protein L13P (Hmal13)| Length = 145 Score = 43.5 bits (101), Expect = 1e-04 Identities = 26/81 (32%), Positives = 41/81 (50%) Frame = +2 Query: 125 VXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILWR 304 V ++ +G+ V VV E ++G + KY KR++ +G + + P I R Sbjct: 26 VAEQALDGETVAVVNAERAVITGREEQIVEKY----EKRVDIGNDNGYFYPKRPDGIFKR 81 Query: 305 TIRGMIPHKTXRGEAALARLK 367 TIRGM+PHK RG A ++ Sbjct: 82 TIRGMLPHKKQRGREAFESVR 102
>RL13_METJA (P54023) 50S ribosomal protein L13P| Length = 137 Score = 43.1 bits (100), Expect = 2e-04 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Frame = +2 Query: 125 VXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXH-GPIHFRAPXKILW 301 V K + G+ +V+V E + ++G Y K+ P GP R P IL Sbjct: 18 VAKRVLRGEEIVIVNAEMVVITGNKDWIIKTYQEEREKKNVANPRRFGPKFPRRPDDILR 77 Query: 302 RTIRGMIPHKTXRGEAALARLK 367 RTIR M+P+K +G A R+K Sbjct: 78 RTIRKMLPYKKPKGREAFKRVK 99
>RL13_AERPE (Q9YB50) 50S ribosomal protein L13P| Length = 155 Score = 38.1 bits (87), Expect = 0.005 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 1/83 (1%) Frame = +2 Query: 122 IVXKELXNGQXVVVVRCEEICMSGGLXRQKMKY-LRFLRKRMNTKPXHGPIHFRAPXKIL 298 +V K L G V VV E+I +SG Y L + + P R P ++ Sbjct: 26 VVAKLLLAGWRVNVVNAEKIVLSGDPRMVVESYRTTVLGVKSHFSHKWRPKRPRTPQRLF 85 Query: 299 WRTIRGMIPHKTXRGEAALARLK 367 +RGM+P RG ALARL+ Sbjct: 86 KHAVRGMLPKNKARGRRALARLR 108
>RL13_SULSO (P95991) 50S ribosomal protein L13P| Length = 149 Score = 37.4 bits (85), Expect = 0.009 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Frame = +2 Query: 125 VXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHF-RAPXKILW 301 V + L G+ V++V E+ +SG R Y L + P I R+P I+ Sbjct: 26 VVRLLKEGKKVIIVNGEKAVISGEKNRVIESYKLLLTVKTLFNPYRNGIRRPRSPINIVK 85 Query: 302 RTIRGMIPHKTXRGEAALARLK 367 RTIRGM+P K+ +G L +K Sbjct: 86 RTIRGMLP-KSSKGRRMLKNVK 106
>RL13_SULAC (P39473) 50S ribosomal protein L13P| Length = 148 Score = 37.0 bits (84), Expect = 0.012 Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Frame = +2 Query: 125 VXKELXNGQXVVVVRCEEICMSGGLXRQKMKY-LRFLRKRMNTKPXHGPIHFRAPXKILW 301 + K L +G+ V VV E+ +SG R Y L F K M G R P I+ Sbjct: 24 IAKLLKSGKKVYVVNAEKAIISGPRSRVLEGYSLLFTVKTMQNPYRQGIRRPRNPINIVK 83 Query: 302 RTIRGMIPHKTXRGEAALARLK 367 RT+RGM+P K G+ LK Sbjct: 84 RTVRGMLP-KNKLGKQIYRNLK 104
>RL13_HALSA (Q9HQJ3) 50S ribosomal protein L13P| Length = 145 Score = 36.6 bits (83), Expect = 0.015 Identities = 25/77 (32%), Positives = 33/77 (42%) Frame = +2 Query: 125 VXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILWR 304 V + G V VV E+ ++G Y R R N GP + + P I R Sbjct: 26 VAERALAGDRVAVVNAEQAVITGTEDDVFSTY----RTRANLGSDRGPYYPKRPDGIFKR 81 Query: 305 TIRGMIPHKTXRGEAAL 355 IRGM+P+K G AL Sbjct: 82 AIRGMLPYKQDDGREAL 98
>RL13_STRCO (Q53874) 50S ribosomal protein L13| Length = 147 Score = 32.3 bits (72), Expect = 0.29 Identities = 20/82 (24%), Positives = 37/82 (45%) Frame = +2 Query: 122 IVXKELXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILW 301 I + G V+++ +++ +SG QKM Y + + + P K + Sbjct: 43 IYAPHVDTGDFVIIINADKVHLSGNKRTQKMAYRHSGYPGGLRSVRYDELLDKNPEKAVE 102 Query: 302 RTIRGMIPHKTXRGEAALARLK 367 + I+GM+P K G L++LK Sbjct: 103 KAIKGMLP-KNSLGRQMLSKLK 123
>RL13_SYNY3 (P73294) 50S ribosomal protein L13| Length = 151 Score = 30.8 bits (68), Expect = 0.84 Identities = 19/77 (24%), Positives = 34/77 (44%) Frame = +2 Query: 137 LXNGQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILWRTIRG 316 + G V+++ E+I ++G QK+ R + + R P +I+ +RG Sbjct: 49 MDTGDFVIIINAEKIEVTGRKREQKLYRRHSGRPGGMKEETFEKLQVRLPERIVESAVRG 108 Query: 317 MIPHKTXRGEAALARLK 367 M+P K G +LK Sbjct: 109 MLP-KNSLGRKLFTKLK 124
>RK13_SPIOL (P12629) 50S ribosomal protein L13, chloroplast precursor (CL13)| Length = 250 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/60 (26%), Positives = 28/60 (46%) Frame = +2 Query: 146 GQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILWRTIRGMIP 325 G V+VV +++ +SG QK+ R + + R P +I+ +RGM+P Sbjct: 150 GAFVIVVNADKVAVSGKKRTQKLYRRHSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLP 209
>VID21_NEUCR (Q7SBU6) Chromatin modification-related protein vid-21| Length = 2189 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +1 Query: 250 QAXPRXHPLPRPGQDPLAHHPRYDSAQDREG 342 Q P+ P P+P P AH P+ S Q + G Sbjct: 2084 QTQPQQQPQPQPQSQPQAHQPQQASQQVQHG 2114
>RL13A_SPIOL (P82454) 60S ribosomal protein L13a (Fragment)| Length = 15 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/15 (86%), Positives = 14/15 (93%) Frame = +1 Query: 46 VSGSGVCAKRVVVDA 90 VSGSG+ AKRVVVDA Sbjct: 1 VSGSGIMAKRVVVDA 15
>AROC_PYRAE (Q8ZW90) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 368 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +1 Query: 277 PRPGQDPLAHHPRYDSAQDREGRGRA 354 PRPG LA++ +Y D G GRA Sbjct: 100 PRPGHADLAYYLKYGKFYDHRGGGRA 125
>RL13_HELPY (P56038) 50S ribosomal protein L13| Length = 141 Score = 27.7 bits (60), Expect = 7.1 Identities = 20/74 (27%), Positives = 32/74 (43%) Frame = +2 Query: 146 GQXVVVVRCEEICMSGGLXRQKMKYLRFLRKRMNTKPXHGPIHFRAPXKILWRTIRGMIP 325 G VVV+ ++ SG K + + +AP K+ +RGM+P Sbjct: 50 GDFVVVINANKVKFSGMKLEDKEYFTHSGYFGSTKSKTLQEMLEKAPEKLYHLAVRGMLP 109 Query: 326 HKTXRGEAALARLK 367 KT G+A + +LK Sbjct: 110 -KTKLGKAMIKKLK 122
>CREB5_MOUSE (Q8K1L0) cAMP response element-binding protein 5 (CRE-BPa)| (Fragment) Length = 353 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/22 (54%), Positives = 12/22 (54%) Frame = +1 Query: 247 HQAXPRXHPLPRPGQDPLAHHP 312 HQ P HP P Q P AHHP Sbjct: 126 HQTLPPHHPYPHQHQHP-AHHP 146
>CREB5_HUMAN (Q02930) cAMP response element-binding protein 5 (CRE-BPa)| Length = 508 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/22 (54%), Positives = 12/22 (54%) Frame = +1 Query: 247 HQAXPRXHPLPRPGQDPLAHHP 312 HQ P HP P Q P AHHP Sbjct: 281 HQTLPPHHPYPHQHQHP-AHHP 301
>DADA_RHILV (Q9RAE6) D-amino acid dehydrogenase small subunit (EC 1.4.99.1)| Length = 416 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/36 (30%), Positives = 18/36 (50%) Frame = -3 Query: 334 GLVRNHTADGAPEDLXRGAEVDGXVXWLGVHPLTEE 227 GL R T + + DL G ++ W G+ P+T + Sbjct: 325 GLARRSTLEYSVTDLFPGGDISKASFWSGLRPMTPD 360 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,054,511 Number of Sequences: 219361 Number of extensions: 406232 Number of successful extensions: 1230 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 1186 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1226 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
