ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags16p09 |
|---|---|
| Clone Library Name | barley_pub |
>CCD47_BRARE (Q66I12) Coiled-coil domain-containing protein 47 precursor| Length = 486 Score = 37.7 bits (86), Expect = 0.022 Identities = 31/141 (21%), Positives = 54/141 (38%), Gaps = 19/141 (13%) Frame = +2 Query: 56 SLHFSDQLAG--------------SYKKVLSFKFVLPDANN-----MADMTKLVALVPFY 178 S+HFSDQ +G KK L F F +P N M + L+ +V + Sbjct: 333 SIHFSDQFSGPKVMQEEGQPLKLPETKKTLLFTFNVPGMGNTSPKDMDSLLPLMNMVIYS 392 Query: 179 IDLVGRYKLSSHARSKTDAARTKAAQEAFRELQGVRQXXXXXXXXXXXXXXXXXXXXXXX 358 ID V + +L+ + K D R + + ++ RQ Sbjct: 393 IDKVKKLRLNREGKQKADRNRARVEENFLKQTHAQRQEAAQTRREEKKRAEKER------ 446 Query: 359 XVLRKKEEKERNRQMKKGAPK 421 + +E+ ER R++++ A + Sbjct: 447 --IMNEEDPERQRRLEEAAQR 465
>CCD47_XENLA (Q6AZI2) Coiled-coil domain-containing protein 47 precursor| Length = 489 Score = 36.6 bits (83), Expect = 0.048 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 19/97 (19%) Frame = +2 Query: 56 SLHFSDQLAG--------------SYKKVLSFKFVLPDANN-----MADMTKLVALVPFY 178 S+HFSDQ +G KK L F F +P + N M + L+ +V + Sbjct: 336 SIHFSDQFSGPKIMQEEGQPLKLPETKKTLLFTFNVPGSGNASVKDMEALLPLMNMVIYS 395 Query: 179 IDLVGRYKLSSHARSKTDAARTKAAQEAFRELQGVRQ 289 ID V +++L+ + K D R + +E F ++ V++ Sbjct: 396 IDKVKKFRLNREGKQKADKNRAR-VEENFLKITHVQR 431
>CC47_MOUSE (Q9D024) Coiled-coil domain-containing protein 47 precursor| (Adipocyte-specific protein 4) Length = 483 Score = 35.8 bits (81), Expect = 0.082 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 29/155 (18%) Frame = +2 Query: 56 SLHFSDQLAG--------------SYKKVLSFKFVLPDANN-----MADMTKLVALVPFY 178 S+HFSDQ +G K+ L F F +P + N M + L+ +V + Sbjct: 330 SVHFSDQFSGPKIMQEEGQPLKLPDTKRTLLFTFNVPGSGNTYPKDMESLLPLMNMVIYS 389 Query: 179 IDLVGRYKLSSHARSKTDAARTKAAQEAFRELQGVRQXXXXXXXXXXXXXXX-------- 334 ID +++L+ + K D R + +E F +L V++ Sbjct: 390 IDKAKKFRLNREGKQKADKNRAR-VEENFLKLTHVQRQEAAQSRREEKKRAEKERIMNEE 448 Query: 335 --XXXXXXXXXVLRKKEEKERNRQMKKGAPKVKML 433 LR++++K +QMK KVK + Sbjct: 449 DPEKQRRLEEAALRREQKKLEKKQMKMKQIKVKAM 483
>CCD47_BOVIN (Q3ZC50) Coiled-coil domain-containing protein 47 precursor| Length = 483 Score = 35.4 bits (80), Expect = 0.11 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 29/155 (18%) Frame = +2 Query: 56 SLHFSDQLAG--------------SYKKVLSFKFVLPDANN-----MADMTKLVALVPFY 178 S+HFSDQ +G K+ L F F +P + N M + L+ +V + Sbjct: 330 SIHFSDQFSGPKIMQEEGQPLKLPDTKRTLLFTFNVPGSGNTYPKDMEALLPLMNMVIYS 389 Query: 179 IDLVGRYKLSSHARSKTDAARTKAAQEAFRELQGVRQXXXXXXXXXXXXXXX-------- 334 ID +++L+ + K D R + +E F +L V++ Sbjct: 390 IDKAKKFRLNREGKQKADKNRAR-VEENFLKLTHVQRQEAAQSRREEKKRAEKERIMNEE 448 Query: 335 --XXXXXXXXXVLRKKEEKERNRQMKKGAPKVKML 433 LR++++K +QMK KVK + Sbjct: 449 DPEKQRRLEEAALRREQKKLEKKQMKMKQIKVKAM 483
>CCD47_RAT (Q5U2X6) Coiled-coil domain-containing protein 47 precursor| Length = 483 Score = 35.0 bits (79), Expect = 0.14 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 29/155 (18%) Frame = +2 Query: 56 SLHFSDQLAG--------------SYKKVLSFKFVLPDANN-----MADMTKLVALVPFY 178 S+HFSDQ +G K+ L F F +P + N M + L+ +V + Sbjct: 330 SVHFSDQFSGPKIMQEEGQPLKLPDTKRTLLFTFNVPGSGNTYPKDMEALLPLMNMVIYS 389 Query: 179 IDLVGRYKLSSHARSKTDAARTKAAQEAFRELQGVRQXXXXXXXXXXXXXXX-------- 334 ID +++L+ + K D R + +E F +L V++ Sbjct: 390 IDKAKKFRLNREGKQKADKNRAR-VEENFLKLTHVQRQEAAQSRREEKKRAEKERIMNEE 448 Query: 335 --XXXXXXXXXVLRKKEEKERNRQMKKGAPKVKML 433 LR++++K +QMK KVK + Sbjct: 449 DPEKQRRLEEAALRREQKKLEKKQMKMKQIKVKAM 483
>CCD47_HUMAN (Q96A33) Coiled-coil domain-containing protein 47 precursor| Length = 483 Score = 35.0 bits (79), Expect = 0.14 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 29/155 (18%) Frame = +2 Query: 56 SLHFSDQLAG--------------SYKKVLSFKFVLPDANN-----MADMTKLVALVPFY 178 S+HFSDQ +G K+ L F F +P + N M + L+ +V + Sbjct: 330 SVHFSDQFSGPKIMQEEGQPLKLPDTKRTLLFTFNVPGSGNTYPKDMEALLPLMNMVIYS 389 Query: 179 IDLVGRYKLSSHARSKTDAARTKAAQEAFRELQGVRQXXXXXXXXXXXXXXX-------- 334 ID +++L+ + K D R + +E F +L V++ Sbjct: 390 IDKAKKFRLNREGKQKADKNRAR-VEENFLKLTHVQRQEAAQSRREEKKRAEKERIMNEE 448 Query: 335 --XXXXXXXXXVLRKKEEKERNRQMKKGAPKVKML 433 LR++++K +QMK KVK + Sbjct: 449 DPEKQRRLEEAALRREQKKLEKKQMKMKQIKVKAM 483
>CCD47_PONPY (Q5RCI4) Coiled-coil domain-containing protein 47 precursor| Length = 483 Score = 34.3 bits (77), Expect = 0.24 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 19/97 (19%) Frame = +2 Query: 56 SLHFSDQLAG--------------SYKKVLSFKFVLPDANN-----MADMTKLVALVPFY 178 S+HFSDQ +G K+ L F F +P + N M + L+ +V + Sbjct: 330 SVHFSDQFSGPKIMQEEGQPLKLPDTKRTLLFTFNVPGSGNTYPKDMEALLPLMNMVIYS 389 Query: 179 IDLVGRYKLSSHARSKTDAARTKAAQEAFRELQGVRQ 289 ID +++L+ + K D R + +E F +L V++ Sbjct: 390 IDKAKKFRLNREGKQKADKNRAR-VEENFLKLTHVQR 425 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,968,223 Number of Sequences: 219361 Number of extensions: 1167606 Number of successful extensions: 2593 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 2540 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2592 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
