No.
Definition
Score (bits)
E Value
1 gb|AC135421.3| Oryza sativa (japonica cultivar-group) chromosome...
184
2e-43
2 dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D...
184
2e-43
3 gb|DQ366717.1| Uncultured Prochlorococcus marinus clone ASNC3046...
42
2.3
4 emb|CR548612.1| Paramecium tetraurelia macronuclear largest chro...
42
2.3
5 gb|AC109778.8| Homo sapiens 3 BAC RP11-17O13 (Roswell Park Cance...
42
2.3
6 dbj|BS000109.1| Pan troglodytes chromosome 22 clone:RP43-150L08,...
42
2.3
7 dbj|AP001709.1| Homo sapiens genomic DNA, chromosome 21q, sectio...
42
2.3
8 dbj|AP000245.3| Homo sapiens genomic DNA, chromosome 21 clone:RP...
42
2.3
9 dbj|AP000206.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2...
42
2.3
10 gb|AC161021.4| Pan troglodytes BAC clone CH251-2N24 from chromos...
40
9.0
11 gb|AC161126.3| Pan troglodytes BAC clone CH251-595C13 from chrom...
40
9.0
12 gb|AC137749.11| Mus musculus chromosome 6, clone RP23-69C16, com...
40
9.0
13 emb|CR457456.7| Zebrafish DNA sequence from clone CH211-235F6 in...
40
9.0
14 gb|AC125157.4| Mus musculus BAC clone RP24-390G17 from chromosom...
40
9.0
15 gb|AC146046.3| Pan troglodytes BAC clone RP43-14H10 from 7, comp...
40
9.0
16 gb|AC079875.5| Homo sapiens BAC clone CTD-2333B13 from 7, comple...
40
9.0
17 gb|AC036121.11| Mus musculus chromosome 6, clone RP23-158O9, com...
40
9.0
18 emb|Z97181.1|HS95C20 Human DNA sequence from clone RP1-95C20 on ...
40
9.0
19 emb|AL359820.12| Human DNA sequence from clone RP11-455C19 on ch...
40
9.0
20 emb|BX936343.9| Zebrafish DNA sequence from clone CH211-51C14 in...
40
9.0
21 gb|AC158997.2| Mus musculus BAC clone RP24-176F12 from chromosom...
40
9.0
22 gb|AY055428.1| Vibrio cholerae STX transposon-like element and p...
40
9.0
23 gb|AC090309.4| Homo sapiens chromosome 11, clone RP11-142C4, com...
40
9.0
24 gb|AC158604.5| Mus musculus 10 BAC RP23-130B2 (Roswell Park Canc...
40
9.0
25 ref|XM_688257.1| PREDICTED: Danio rerio similar to transducin-li...
40
9.0
26 gb|AC021021.9| Homo sapiens BAC clone RP11-557N1 from 2, complet...
40
9.0
27 gb|AC073215.5| Homo sapiens BAC clone RP11-501L9 from 2, complet...
40
9.0
28 emb|BX569795.5| Zebrafish DNA sequence from clone CH211-206A19 i...
40
9.0
29 emb|CT573071.1| Kuenenia stuttgartiensis genome fragment KUST_E ...
40
9.0
30 emb|AL117672.5|CNS01DRN Human chromosome 14 DNA sequence BAC R-1...
40
9.0
31 emb|AL121769.4|CNS01DSD Human chromosome 14 DNA sequence BAC R-2...
40
9.0
32 emb|AL049781.5|CNS00003 Human chromosome 14 DNA sequence BAC R-3...
40
9.0
33 dbj|AP002791.3| Homo sapiens genomic DNA, chromosome 11q clone:R...
40
9.0
34 dbj|AP001636.4| Homo sapiens genomic DNA, chromosome 11q, clone:...
40
9.0
35 emb|AJ812642.1| Muraltia heisteria 18S rRNA gene (partial), 5.8S...
40
9.0
>gb|AC135421.3 | Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBb0012G21, complete sequence
Length = 135750
Score = 184 bits (93), Expect = 2e-43
Identities = 167/191 (87%), Gaps = 3/191 (1%)
Strand = Plus / Minus
Query: 475 tttatgtggtctgcccatttcctgaaccatctgcagtcctacagacactggtagaaagtt 534
||||||| ||||| |||||||| ||||| ||||| |||||| |||||||||||||| |||
Sbjct: 53322 tttatgtagtctgtccatttcccgaaccttctgctgtcctagagacactggtagaatgtt 53263
Query: 535 ctgttgcccttgggtct---atcttatcgtcagagagagaaaggaaatcattcctatata 591
||||||| |||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct: 53262 ctgttgctcttgggtcggtaatgttatccccagagagagaaaggaaatcattcctatatt 53203
Query: 592 ctcaggttgccaaagctctaaacagcagcgcttctgctgatgaagcatcagcatccaatg 651
|||||||||||||||| |||||| ||| ||||||| ||||||| |||||||||| ||||
Sbjct: 53202 ctcaggttgccaaagccctaaactgcaatgcttctgttgatgaatcatcagcatctaatg 53143
Query: 652 ttgtaatgctc 662
|||| ||||||
Sbjct: 53142 ttgtgatgctc 53132
Score = 113 bits (57), Expect = 8e-22
Identities = 195/241 (80%)
Strand = Plus / Minus
Query: 175 tttatgaagtttgcaaactgggtactcattcaccacaacacagtggggggcaaatagaac 234
|||||||||||||||||||||| ||||| || |||||| ||||||| |||||||| ||||
Sbjct: 54175 tttatgaagtttgcaaactgggaactcactctccacaaaacagtggagggcaaatggaac 54116
Query: 235 aatctcctggaaaatatctgccttcaggacttgttctcgttgattgtcctgatcaattga 294
||| |||||||||||| || ||||||| || |||||| || |||||||||||| |||
Sbjct: 54115 tatcccctggaaaatatttgtcttcagggctcgttctcaccgagtgtcctgatcaagtga 54056
Query: 295 agactagcggcagccactcggtttctatcagctcagtaactgaatactttcaagctcttt 354
||| | | | ||||||| ||| ||||| ||| || ||||| ||||||||||||
Sbjct: 54055 agattggaaacggccactcaagttccatcagttcaacaagcgaatatcttcaagctcttt 53996
Query: 355 caaaaagttggagtgtgaaaagctttatatcgtctctggcaaggataattaaggacataa 414
||| || |||| ||||||||||||| | | |||||| ||||| | || ||||||||||
Sbjct: 53995 caagaaactggactgtgaaaagctttgtgacatctctgacaagggtgataaaggacataa 53936
Query: 415 a 415
|
Sbjct: 53935 a 53935
Score = 101 bits (51), Expect = 3e-18
Identities = 72/79 (91%)
Strand = Plus / Minus
Query: 96 gttacttactacgcactgtgccctgatattgatatgcttacttctgcagccactgatttc 155
|||||||| || || ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 55183 gttacttattatgctctgtgccctgatattgaaatgcttacttctgcggccactgatttt 55124
Query: 156 ttcatgcagcttggaacaa 174
||| |||||||||||||||
Sbjct: 55123 ttcctgcagcttggaacaa 55105
Score = 95.6 bits (48), Expect = 2e-16
Identities = 73/80 (91%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 6 gttaccaggnatgattggttaaagacctctgctgattgcctcaaattgtgggagaaggct 65
||||||||| ||||||||||||||||||||||| |||| || | |||||||||||||||
Sbjct: 55510 gttaccagg-atgattggttaaagacctctgctaattgtcttagcttgtgggagaaggct 55452
Query: 66 cctttggaaccttatgcttc 85
||| ||||||||||||||||
Sbjct: 55451 cctctggaaccttatgcttc 55432
>dbj|AP008211.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 184 bits (93), Expect = 2e-43
Identities = 167/191 (87%), Gaps = 3/191 (1%)
Strand = Plus / Minus
Query: 475 tttatgtggtctgcccatttcctgaaccatctgcagtcctacagacactggtagaaagtt 534
||||||| ||||| |||||||| ||||| ||||| |||||| |||||||||||||| |||
Sbjct: 21800913 tttatgtagtctgtccatttcccgaaccttctgctgtcctagagacactggtagaatgtt 21800854
Query: 535 ctgttgcccttgggtct---atcttatcgtcagagagagaaaggaaatcattcctatata 591
||||||| |||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct: 21800853 ctgttgctcttgggtcggtaatgttatccccagagagagaaaggaaatcattcctatatt 21800794
Query: 592 ctcaggttgccaaagctctaaacagcagcgcttctgctgatgaagcatcagcatccaatg 651
|||||||||||||||| |||||| ||| ||||||| ||||||| |||||||||| ||||
Sbjct: 21800793 ctcaggttgccaaagccctaaactgcaatgcttctgttgatgaatcatcagcatctaatg 21800734
Query: 652 ttgtaatgctc 662
|||| ||||||
Sbjct: 21800733 ttgtgatgctc 21800723
Score = 113 bits (57), Expect = 8e-22
Identities = 195/241 (80%)
Strand = Plus / Minus
Query: 175 tttatgaagtttgcaaactgggtactcattcaccacaacacagtggggggcaaatagaac 234
|||||||||||||||||||||| ||||| || |||||| ||||||| |||||||| ||||
Sbjct: 21801766 tttatgaagtttgcaaactgggaactcactctccacaaaacagtggagggcaaatggaac 21801707
Query: 235 aatctcctggaaaatatctgccttcaggacttgttctcgttgattgtcctgatcaattga 294
||| |||||||||||| || ||||||| || |||||| || |||||||||||| |||
Sbjct: 21801706 tatcccctggaaaatatttgtcttcagggctcgttctcaccgagtgtcctgatcaagtga 21801647
Query: 295 agactagcggcagccactcggtttctatcagctcagtaactgaatactttcaagctcttt 354
||| | | | ||||||| ||| ||||| ||| || ||||| ||||||||||||
Sbjct: 21801646 agattggaaacggccactcaagttccatcagttcaacaagcgaatatcttcaagctcttt 21801587
Query: 355 caaaaagttggagtgtgaaaagctttatatcgtctctggcaaggataattaaggacataa 414
||| || |||| ||||||||||||| | | |||||| ||||| | || ||||||||||
Sbjct: 21801586 caagaaactggactgtgaaaagctttgtgacatctctgacaagggtgataaaggacataa 21801527
Query: 415 a 415
|
Sbjct: 21801526 a 21801526
Score = 101 bits (51), Expect = 3e-18
Identities = 72/79 (91%)
Strand = Plus / Minus
Query: 96 gttacttactacgcactgtgccctgatattgatatgcttacttctgcagccactgatttc 155
|||||||| || || ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 21802774 gttacttattatgctctgtgccctgatattgaaatgcttacttctgcggccactgatttt 21802715
Query: 156 ttcatgcagcttggaacaa 174
||| |||||||||||||||
Sbjct: 21802714 ttcctgcagcttggaacaa 21802696
Score = 95.6 bits (48), Expect = 2e-16
Identities = 73/80 (91%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 6 gttaccaggnatgattggttaaagacctctgctgattgcctcaaattgtgggagaaggct 65
||||||||| ||||||||||||||||||||||| |||| || | |||||||||||||||
Sbjct: 21803101 gttaccagg-atgattggttaaagacctctgctaattgtcttagcttgtgggagaaggct 21803043
Query: 66 cctttggaaccttatgcttc 85
||| ||||||||||||||||
Sbjct: 21803042 cctctggaaccttatgcttc 21803023
>dbj|AP000206.1 | Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
f43D11-119B8, segment 4/12, complete sequence
Length = 100000
Score = 42.1 bits (21), Expect = 2.3
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 573 aggaaatcattcctatatact 593
|||||||||||||||||||||
Sbjct: 28889 aggaaatcattcctatatact 28909
>emb|AJ812642.1 | Muraltia heisteria 18S rRNA gene (partial), 5.8S rRNA gene, 26S
rRNA gene (partial), ITS1 and ITS2
Length = 809
Score = 40.1 bits (20), Expect = 9.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 41 ttgcctcaaattgtgggaga 60
||||||||||||||||||||
Sbjct: 558 ttgcctcaaattgtgggaga 577
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,511,043
Number of Sequences: 3902068
Number of extensions: 6511043
Number of successful extensions: 153293
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 153164
Number of HSP's gapped (non-prelim): 129
length of query: 662
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 639
effective length of database: 17,143,297,704
effective search space: 10954567232856
effective search space used: 10954567232856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)