ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags16o12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469438.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2080 Score = 283 bits (143), Expect = 3e-73 Identities = 393/475 (82%), Gaps = 1/475 (0%) Strand = Plus / Plus Query: 4 acttccatgttggttggtttcttgatccct-actaaatggtcaatacccgaagaccatgc 62 |||||||||||||||||||||||||||| | | ||||||| ||||| || || | |||| Sbjct: 985 acttccatgttggttggtttcttgatccgttaataaatggacaatatccaaaaaatatgc 1044 Query: 63 aagatatagtaaaagagaggttacctagtttcacacctgaacaatctaagttggtcaagg 122 |||||| || ||||| || ||||||| |||||| ||||||||| ||||| | ||||||| Sbjct: 1045 gagatattgtgaaagaaagattacctactttcacgcctgaacaagctaagctagtcaagg 1104 Query: 123 gctctgtagattacattgggataaatcagtatacagcgacctacatggcagaccaaccaa 182 |||| | |||||| ||||||| ||||| ||||| || | ||||||||||||||||||| Sbjct: 1105 gctccgcagattattttgggatcaatcaatatactgctaactacatggcagaccaaccag 1164 Query: 183 cgctccagcaaccaccaacaagctactcatctgactggcatgttcaatatatatttcagc 242 | | |||||| || |||| |||||||||||||| ||||||||| || ||| ||||| | Sbjct: 1165 cacctcagcaagcagcaactagctactcatctgattggcatgtttcatttatctttcaac 1224 Query: 243 gaaatggcgtaccgattggacagaaggcgaactccaattggctttacatcgtcccaacag 302 ||||||||||||| ||||||||| |||| ||||| ||||||||||| ||||| || || | Sbjct: 1225 gaaatggcgtaccaattggacagcaggcaaactctaattggctttatatcgttccgactg 1284 Query: 303 gcatgtatggatgtgtgaactacataagggagaagtacaacaacccgacgatcattatat 362 ||||||||||| |||||||||||||| ||||||||| || || || || ||||| |||| Sbjct: 1285 gcatgtatggagctgtgaactacataaaggagaagtataataatccaacaatcatcatat 1344 Query: 363 ccgaaaacggaatggatcaacccgcgaacctgacccgcgaggagttcctgcacgacgcct 422 | ||||| |||||||||||| | | || || || || || ||||||||||| ||| || Sbjct: 1345 ctgaaaatggaatggatcaatctggaaatctcactcgtgaagagttcctgcatgacaccg 1404 Query: 423 cgagggtcgagttctacaagacctacctcgccgagctgaagaaggcgatcgacga 477 ||| | ||||||||||||| ||||||| | || |||||||| || |||||||| Sbjct: 1405 aaaggattgagttctacaagaactacctcactgaactgaagaaagccatcgacga 1459
>dbj|AK120790.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011K21, full insert sequence Length = 2082 Score = 283 bits (143), Expect = 3e-73 Identities = 393/475 (82%), Gaps = 1/475 (0%) Strand = Plus / Plus Query: 4 acttccatgttggttggtttcttgatccct-actaaatggtcaatacccgaagaccatgc 62 |||||||||||||||||||||||||||| | | ||||||| ||||| || || | |||| Sbjct: 987 acttccatgttggttggtttcttgatccgttaataaatggacaatatccaaaaaatatgc 1046 Query: 63 aagatatagtaaaagagaggttacctagtttcacacctgaacaatctaagttggtcaagg 122 |||||| || ||||| || ||||||| |||||| ||||||||| ||||| | ||||||| Sbjct: 1047 gagatattgtgaaagaaagattacctactttcacgcctgaacaagctaagctagtcaagg 1106 Query: 123 gctctgtagattacattgggataaatcagtatacagcgacctacatggcagaccaaccaa 182 |||| | |||||| ||||||| ||||| ||||| || | ||||||||||||||||||| Sbjct: 1107 gctccgcagattattttgggatcaatcaatatactgctaactacatggcagaccaaccag 1166 Query: 183 cgctccagcaaccaccaacaagctactcatctgactggcatgttcaatatatatttcagc 242 | | |||||| || |||| |||||||||||||| ||||||||| || ||| ||||| | Sbjct: 1167 cacctcagcaagcagcaactagctactcatctgattggcatgtttcatttatctttcaac 1226 Query: 243 gaaatggcgtaccgattggacagaaggcgaactccaattggctttacatcgtcccaacag 302 ||||||||||||| ||||||||| |||| ||||| ||||||||||| ||||| || || | Sbjct: 1227 gaaatggcgtaccaattggacagcaggcaaactctaattggctttatatcgttccgactg 1286 Query: 303 gcatgtatggatgtgtgaactacataagggagaagtacaacaacccgacgatcattatat 362 ||||||||||| |||||||||||||| ||||||||| || || || || ||||| |||| Sbjct: 1287 gcatgtatggagctgtgaactacataaaggagaagtataataatccaacaatcatcatat 1346 Query: 363 ccgaaaacggaatggatcaacccgcgaacctgacccgcgaggagttcctgcacgacgcct 422 | ||||| |||||||||||| | | || || || || || ||||||||||| ||| || Sbjct: 1347 ctgaaaatggaatggatcaatctggaaatctcactcgtgaagagttcctgcatgacaccg 1406 Query: 423 cgagggtcgagttctacaagacctacctcgccgagctgaagaaggcgatcgacga 477 ||| | ||||||||||||| ||||||| | || |||||||| || |||||||| Sbjct: 1407 aaaggattgagttctacaagaactacctcactgaactgaagaaagccatcgacga 1461
>dbj|AK105850.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-G08, full insert sequence Length = 1387 Score = 283 bits (143), Expect = 3e-73 Identities = 393/475 (82%), Gaps = 1/475 (0%) Strand = Plus / Plus Query: 4 acttccatgttggttggtttcttgatccct-actaaatggtcaatacccgaagaccatgc 62 |||||||||||||||||||||||||||| | | ||||||| ||||| || || | |||| Sbjct: 370 acttccatgttggttggtttcttgatccgttaataaatggacaatatccaaaaaatatgc 429 Query: 63 aagatatagtaaaagagaggttacctagtttcacacctgaacaatctaagttggtcaagg 122 |||||| || ||||| || ||||||| |||||| ||||||||| ||||| | ||||||| Sbjct: 430 gagatattgtgaaagaaagattacctactttcacgcctgaacaagctaagctagtcaagg 489 Query: 123 gctctgtagattacattgggataaatcagtatacagcgacctacatggcagaccaaccaa 182 |||| | |||||| ||||||| ||||| ||||| || | ||||||||||||||||||| Sbjct: 490 gctccgcagattattttgggatcaatcaatatactgctaactacatggcagaccaaccag 549 Query: 183 cgctccagcaaccaccaacaagctactcatctgactggcatgttcaatatatatttcagc 242 | | |||||| || |||| |||||||||||||| ||||||||| || ||| ||||| | Sbjct: 550 cacctcagcaagcagcaactagctactcatctgattggcatgtttcatttatctttcaac 609 Query: 243 gaaatggcgtaccgattggacagaaggcgaactccaattggctttacatcgtcccaacag 302 ||||||||||||| ||||||||| |||| ||||| ||||||||||| ||||| || || | Sbjct: 610 gaaatggcgtaccaattggacagcaggcaaactctaattggctttatatcgttccgactg 669 Query: 303 gcatgtatggatgtgtgaactacataagggagaagtacaacaacccgacgatcattatat 362 ||||||||||| |||||||||||||| ||||||||| || || || || ||||| |||| Sbjct: 670 gcatgtatggagctgtgaactacataaaggagaagtataataatccaacaatcatcatat 729 Query: 363 ccgaaaacggaatggatcaacccgcgaacctgacccgcgaggagttcctgcacgacgcct 422 | ||||| |||||||||||| | | || || || || || ||||||||||| ||| || Sbjct: 730 ctgaaaatggaatggatcaatctggaaatctcactcgtgaagagttcctgcatgacaccg 789 Query: 423 cgagggtcgagttctacaagacctacctcgccgagctgaagaaggcgatcgacga 477 ||| | ||||||||||||| ||||||| | || |||||||| || |||||||| Sbjct: 790 aaaggattgagttctacaagaactacctcactgaactgaagaaagccatcgacga 844
>dbj|AK059517.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-C01, full insert sequence Length = 1336 Score = 283 bits (143), Expect = 3e-73 Identities = 393/475 (82%), Gaps = 1/475 (0%) Strand = Plus / Plus Query: 4 acttccatgttggttggtttcttgatccct-actaaatggtcaatacccgaagaccatgc 62 |||||||||||||||||||||||||||| | | ||||||| ||||| || || | |||| Sbjct: 241 acttccatgttggttggtttcttgatccgttaataaatggacaatatccaaaaaatatgc 300 Query: 63 aagatatagtaaaagagaggttacctagtttcacacctgaacaatctaagttggtcaagg 122 |||||| || ||||| || ||||||| |||||| ||||||||| ||||| | ||||||| Sbjct: 301 gagatattgtgaaagaaagattacctactttcacgcctgaacaagctaagctagtcaagg 360 Query: 123 gctctgtagattacattgggataaatcagtatacagcgacctacatggcagaccaaccaa 182 |||| | |||||| ||||||| ||||| ||||| || | ||||||||||||||||||| Sbjct: 361 gctccgcagattattttgggatcaatcaatatactgctaactacatggcagaccaaccag 420 Query: 183 cgctccagcaaccaccaacaagctactcatctgactggcatgttcaatatatatttcagc 242 | | |||||| || |||| |||||||||||||| ||||||||| || ||| ||||| | Sbjct: 421 cacctcagcaagcagcaactagctactcatctgattggcatgtttcatttatctttcaac 480 Query: 243 gaaatggcgtaccgattggacagaaggcgaactccaattggctttacatcgtcccaacag 302 ||||||||||||| ||||||||| |||| ||||| ||||||||||| ||||| || || | Sbjct: 481 gaaatggcgtaccaattggacagcaggcaaactctaattggctttatatcgttccgactg 540 Query: 303 gcatgtatggatgtgtgaactacataagggagaagtacaacaacccgacgatcattatat 362 ||||||||||| |||||||||||||| ||||||||| || || || || ||||| |||| Sbjct: 541 gcatgtatggagctgtgaactacataaaggagaagtataataatccaacaatcatcatat 600 Query: 363 ccgaaaacggaatggatcaacccgcgaacctgacccgcgaggagttcctgcacgacgcct 422 | ||||| |||||||||||| | | || || || || || ||||||||||| ||| || Sbjct: 601 ctgaaaatggaatggatcaatctggaaatctcactcgtgaagagttcctgcatgacaccg 660 Query: 423 cgagggtcgagttctacaagacctacctcgccgagctgaagaaggcgatcgacga 477 ||| | ||||||||||||| ||||||| | || |||||||| || |||||||| Sbjct: 661 aaaggattgagttctacaagaactacctcactgaactgaagaaagccatcgacga 715
>gb|AY107376.1| Zea mays PCO134646 mRNA sequence Length = 845 Score = 139 bits (70), Expect = 1e-29 Identities = 193/234 (82%) Strand = Plus / Minus Query: 257 attggacagaaggcgaactccaattggctttacatcgtcccaacaggcatgtatggatgt 316 |||||||||| |||| |||| | ||||||||||||||||||| | |||||||||||| Sbjct: 757 attggacagatggcgcactcaatttggctttacatcgtcccatcgggcatgtatggagtc 698 Query: 317 gtgaactacataagggagaagtacaacaacccgacgatcattatatccgaaaacggaatg 376 ||||||||| ||| ||| |||||| | || || | ||||| ||||| |||||||||||| Sbjct: 697 gtgaactacctaaaggaaaagtaccataatccaatcatcatcatatcggaaaacggaatg 638 Query: 377 gatcaacccgcgaacctgacccgcgaggagttcctgcacgacgcctcgagggtcgagttc 436 ||||| || | ||||| || |||||||||| | ||||||||||| |||| |||| ||| Sbjct: 637 gatcagcctggaaacctcacgcgcgaggagtacgtgcacgacgccgtgaggatcgacttc 578 Query: 437 tacaagacctacctcgccgagctgaagaaggcgatcgacgacggcgcgaacgtg 490 ||||||| |||||| | ||||| |||| | |||||||| ||||||||||||| Sbjct: 577 tacaagaactacctgacggagctaaagagagggatcgacggcggcgcgaacgtg 524
>gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C08 map R2847, complete sequence Length = 100918 Score = 121 bits (61), Expect = 2e-24 Identities = 173/209 (82%), Gaps = 1/209 (0%) Strand = Plus / Minus Query: 19 ggtttcttgatccct-actaaatggtcaatacccgaagaccatgcaagatatagtaaaag 77 ||||||||||||| | | ||||||| ||||| || || | |||| |||||| || |||| Sbjct: 90921 ggtttcttgatccgttaataaatggacaatatccaaaaaatatgcgagatattgtgaaag 90862 Query: 78 agaggttacctagtttcacacctgaacaatctaagttggtcaagggctctgtagattaca 137 | || ||||||| |||||| ||||||||| ||||| | ||||||||||| | |||||| Sbjct: 90861 aaagattacctactttcacgcctgaacaagctaagctagtcaagggctccgcagattatt 90802 Query: 138 ttgggataaatcagtatacagcgacctacatggcagaccaaccaacgctccagcaaccac 197 ||||||| ||||| ||||| || | ||||||||||||||||||| | | |||||| || Sbjct: 90801 ttgggatcaatcaatatactgctaactacatggcagaccaaccagcacctcagcaagcag 90742 Query: 198 caacaagctactcatctgactggcatgtt 226 |||| |||||||||||||| ||||||||| Sbjct: 90741 caactagctactcatctgattggcatgtt 90713 Score = 77.8 bits (39), Expect = 3e-11 Identities = 87/103 (84%) Strand = Plus / Minus Query: 267 aggcgaactccaattggctttacatcgtcccaacaggcatgtatggatgtgtgaactaca 326 |||| ||||| ||||||||||| ||||| || || |||||||||||| ||||||||||| Sbjct: 90469 aggcaaactctaattggctttatatcgttccgactggcatgtatggagctgtgaactaca 90410 Query: 327 taagggagaagtacaacaacccgacgatcattatatccgaaaa 369 ||| ||||||||| || || || || ||||| ||||| ||||| Sbjct: 90409 taaaggagaagtataataatccaacaatcatcatatctgaaaa 90367 Score = 73.8 bits (37), Expect = 5e-10 Identities = 94/113 (83%) Strand = Plus / Minus Query: 371 ggaatggatcaacccgcgaacctgacccgcgaggagttcctgcacgacgcctcgagggtc 430 |||||||||||||| |||||||| | |||||| ||| | ||| |||| || ||||||| Sbjct: 81720 ggaatggatcaacctgcgaacctcagccgcgaccagtacttgcgcgacaccacgagggtt 81661 Query: 431 gagttctacaagacctacctcgccgagctgaagaaggcgatcgacgacggcgc 483 | ||||||| || ||||||| || ||||||||||||| |||||||| ||||| Sbjct: 81660 catttctacaggagctacctcacccagctgaagaaggccatcgacgagggcgc 81608 Score = 54.0 bits (27), Expect = 4e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 278 aattggctttacatcgtcccaacaggcatgtatggatgtgtgaactacataagggagaag 337 ||||||||||||||||| ||| || ||||| ||||||||||||||||| | | ||||| Sbjct: 81925 aattggctttacatcgtgccatgggggatgtacggatgtgtgaactacatcaagcagaag 81866 Query: 338 tac 340 ||| Sbjct: 81865 tac 81863 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Minus Query: 431 gagttctacaagacctacctcgccgagctgaagaaggcgatcgacga 477 ||||||||||||| ||||||| | || |||||||| || |||||||| Sbjct: 90226 gagttctacaagaactacctcactgaactgaagaaagccatcgacga 90180 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 237 ttcagcgaaatggcgtaccgattggacag 265 |||| |||||||||||||| ||||||||| Sbjct: 90607 ttcaacgaaatggcgtaccaattggacag 90579
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 121 bits (61), Expect = 2e-24 Identities = 173/209 (82%), Gaps = 1/209 (0%) Strand = Plus / Minus Query: 19 ggtttcttgatccct-actaaatggtcaatacccgaagaccatgcaagatatagtaaaag 77 ||||||||||||| | | ||||||| ||||| || || | |||| |||||| || |||| Sbjct: 27955193 ggtttcttgatccgttaataaatggacaatatccaaaaaatatgcgagatattgtgaaag 27955134 Query: 78 agaggttacctagtttcacacctgaacaatctaagttggtcaagggctctgtagattaca 137 | || ||||||| |||||| ||||||||| ||||| | ||||||||||| | |||||| Sbjct: 27955133 aaagattacctactttcacgcctgaacaagctaagctagtcaagggctccgcagattatt 27955074 Query: 138 ttgggataaatcagtatacagcgacctacatggcagaccaaccaacgctccagcaaccac 197 ||||||| ||||| ||||| || | ||||||||||||||||||| | | |||||| || Sbjct: 27955073 ttgggatcaatcaatatactgctaactacatggcagaccaaccagcacctcagcaagcag 27955014 Query: 198 caacaagctactcatctgactggcatgtt 226 |||| |||||||||||||| ||||||||| Sbjct: 27955013 caactagctactcatctgattggcatgtt 27954985 Score = 77.8 bits (39), Expect = 3e-11 Identities = 87/103 (84%) Strand = Plus / Minus Query: 267 aggcgaactccaattggctttacatcgtcccaacaggcatgtatggatgtgtgaactaca 326 |||| ||||| ||||||||||| ||||| || || |||||||||||| ||||||||||| Sbjct: 27954741 aggcaaactctaattggctttatatcgttccgactggcatgtatggagctgtgaactaca 27954682 Query: 327 taagggagaagtacaacaacccgacgatcattatatccgaaaa 369 ||| ||||||||| || || || || ||||| ||||| ||||| Sbjct: 27954681 taaaggagaagtataataatccaacaatcatcatatctgaaaa 27954639 Score = 73.8 bits (37), Expect = 5e-10 Identities = 94/113 (83%) Strand = Plus / Minus Query: 371 ggaatggatcaacccgcgaacctgacccgcgaggagttcctgcacgacgcctcgagggtc 430 |||||||||||||| |||||||| | |||||| ||| | ||| |||| || ||||||| Sbjct: 27945992 ggaatggatcaacctgcgaacctcagccgcgaccagtacttgcgcgacaccacgagggtt 27945933 Query: 431 gagttctacaagacctacctcgccgagctgaagaaggcgatcgacgacggcgc 483 | ||||||| || ||||||| || ||||||||||||| |||||||| ||||| Sbjct: 27945932 catttctacaggagctacctcacccagctgaagaaggccatcgacgagggcgc 27945880 Score = 54.0 bits (27), Expect = 4e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 278 aattggctttacatcgtcccaacaggcatgtatggatgtgtgaactacataagggagaag 337 ||||||||||||||||| ||| || ||||| ||||||||||||||||| | | ||||| Sbjct: 27946197 aattggctttacatcgtgccatgggggatgtacggatgtgtgaactacatcaagcagaag 27946138 Query: 338 tac 340 ||| Sbjct: 27946137 tac 27946135 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Minus Query: 431 gagttctacaagacctacctcgccgagctgaagaaggcgatcgacga 477 ||||||||||||| ||||||| | || |||||||| || |||||||| Sbjct: 27954498 gagttctacaagaactacctcactgaactgaagaaagccatcgacga 27954452 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 237 ttcagcgaaatggcgtaccgattggacag 265 |||| |||||||||||||| ||||||||| Sbjct: 27954879 ttcaacgaaatggcgtaccaattggacag 27954851 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 gttggttggtttcttgatcc 31 |||||||||||||||||||| Sbjct: 17601184 gttggttggtttcttgatcc 17601165
>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete sequence Length = 133889 Score = 121 bits (61), Expect = 2e-24 Identities = 173/209 (82%), Gaps = 1/209 (0%) Strand = Plus / Plus Query: 19 ggtttcttgatccct-actaaatggtcaatacccgaagaccatgcaagatatagtaaaag 77 ||||||||||||| | | ||||||| ||||| || || | |||| |||||| || |||| Sbjct: 69833 ggtttcttgatccgttaataaatggacaatatccaaaaaatatgcgagatattgtgaaag 69892 Query: 78 agaggttacctagtttcacacctgaacaatctaagttggtcaagggctctgtagattaca 137 | || ||||||| |||||| ||||||||| ||||| | ||||||||||| | |||||| Sbjct: 69893 aaagattacctactttcacgcctgaacaagctaagctagtcaagggctccgcagattatt 69952 Query: 138 ttgggataaatcagtatacagcgacctacatggcagaccaaccaacgctccagcaaccac 197 ||||||| ||||| ||||| || | ||||||||||||||||||| | | |||||| || Sbjct: 69953 ttgggatcaatcaatatactgctaactacatggcagaccaaccagcacctcagcaagcag 70012 Query: 198 caacaagctactcatctgactggcatgtt 226 |||| |||||||||||||| ||||||||| Sbjct: 70013 caactagctactcatctgattggcatgtt 70041 Score = 77.8 bits (39), Expect = 3e-11 Identities = 87/103 (84%) Strand = Plus / Plus Query: 267 aggcgaactccaattggctttacatcgtcccaacaggcatgtatggatgtgtgaactaca 326 |||| ||||| ||||||||||| ||||| || || |||||||||||| ||||||||||| Sbjct: 70285 aggcaaactctaattggctttatatcgttccgactggcatgtatggagctgtgaactaca 70344 Query: 327 taagggagaagtacaacaacccgacgatcattatatccgaaaa 369 ||| ||||||||| || || || || ||||| ||||| ||||| Sbjct: 70345 taaaggagaagtataataatccaacaatcatcatatctgaaaa 70387 Score = 73.8 bits (37), Expect = 5e-10 Identities = 94/113 (83%) Strand = Plus / Plus Query: 371 ggaatggatcaacccgcgaacctgacccgcgaggagttcctgcacgacgcctcgagggtc 430 |||||||||||||| |||||||| | |||||| ||| | ||| |||| || ||||||| Sbjct: 79034 ggaatggatcaacctgcgaacctcagccgcgaccagtacttgcgcgacaccacgagggtt 79093 Query: 431 gagttctacaagacctacctcgccgagctgaagaaggcgatcgacgacggcgc 483 | ||||||| || ||||||| || ||||||||||||| |||||||| ||||| Sbjct: 79094 catttctacaggagctacctcacccagctgaagaaggccatcgacgagggcgc 79146 Score = 54.0 bits (27), Expect = 4e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 278 aattggctttacatcgtcccaacaggcatgtatggatgtgtgaactacataagggagaag 337 ||||||||||||||||| ||| || ||||| ||||||||||||||||| | | ||||| Sbjct: 78829 aattggctttacatcgtgccatgggggatgtacggatgtgtgaactacatcaagcagaag 78888 Query: 338 tac 340 ||| Sbjct: 78889 tac 78891 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 431 gagttctacaagacctacctcgccgagctgaagaaggcgatcgacga 477 ||||||||||||| ||||||| | || |||||||| || |||||||| Sbjct: 70528 gagttctacaagaactacctcactgaactgaagaaagccatcgacga 70574 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 237 ttcagcgaaatggcgtaccgattggacag 265 |||| |||||||||||||| ||||||||| Sbjct: 70147 ttcaacgaaatggcgtaccaattggacag 70175
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 121 bits (61), Expect = 2e-24 Identities = 173/209 (82%), Gaps = 1/209 (0%) Strand = Plus / Minus Query: 19 ggtttcttgatccct-actaaatggtcaatacccgaagaccatgcaagatatagtaaaag 77 ||||||||||||| | | ||||||| ||||| || || | |||| |||||| || |||| Sbjct: 28046517 ggtttcttgatccgttaataaatggacaatatccaaaaaatatgcgagatattgtgaaag 28046458 Query: 78 agaggttacctagtttcacacctgaacaatctaagttggtcaagggctctgtagattaca 137 | || ||||||| |||||| ||||||||| ||||| | ||||||||||| | |||||| Sbjct: 28046457 aaagattacctactttcacgcctgaacaagctaagctagtcaagggctccgcagattatt 28046398 Query: 138 ttgggataaatcagtatacagcgacctacatggcagaccaaccaacgctccagcaaccac 197 ||||||| ||||| ||||| || | ||||||||||||||||||| | | |||||| || Sbjct: 28046397 ttgggatcaatcaatatactgctaactacatggcagaccaaccagcacctcagcaagcag 28046338 Query: 198 caacaagctactcatctgactggcatgtt 226 |||| |||||||||||||| ||||||||| Sbjct: 28046337 caactagctactcatctgattggcatgtt 28046309 Score = 77.8 bits (39), Expect = 3e-11 Identities = 87/103 (84%) Strand = Plus / Minus Query: 267 aggcgaactccaattggctttacatcgtcccaacaggcatgtatggatgtgtgaactaca 326 |||| ||||| ||||||||||| ||||| || || |||||||||||| ||||||||||| Sbjct: 28046065 aggcaaactctaattggctttatatcgttccgactggcatgtatggagctgtgaactaca 28046006 Query: 327 taagggagaagtacaacaacccgacgatcattatatccgaaaa 369 ||| ||||||||| || || || || ||||| ||||| ||||| Sbjct: 28046005 taaaggagaagtataataatccaacaatcatcatatctgaaaa 28045963 Score = 73.8 bits (37), Expect = 5e-10 Identities = 94/113 (83%) Strand = Plus / Minus Query: 371 ggaatggatcaacccgcgaacctgacccgcgaggagttcctgcacgacgcctcgagggtc 430 |||||||||||||| |||||||| | |||||| ||| | ||| |||| || ||||||| Sbjct: 28037316 ggaatggatcaacctgcgaacctcagccgcgaccagtacttgcgcgacaccacgagggtt 28037257 Query: 431 gagttctacaagacctacctcgccgagctgaagaaggcgatcgacgacggcgc 483 | ||||||| || ||||||| || ||||||||||||| |||||||| ||||| Sbjct: 28037256 catttctacaggagctacctcacccagctgaagaaggccatcgacgagggcgc 28037204 Score = 54.0 bits (27), Expect = 4e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 278 aattggctttacatcgtcccaacaggcatgtatggatgtgtgaactacataagggagaag 337 ||||||||||||||||| ||| || ||||| ||||||||||||||||| | | ||||| Sbjct: 28037521 aattggctttacatcgtgccatgggggatgtacggatgtgtgaactacatcaagcagaag 28037462 Query: 338 tac 340 ||| Sbjct: 28037461 tac 28037459 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Minus Query: 431 gagttctacaagacctacctcgccgagctgaagaaggcgatcgacga 477 ||||||||||||| ||||||| | || |||||||| || |||||||| Sbjct: 28045822 gagttctacaagaactacctcactgaactgaagaaagccatcgacga 28045776 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 237 ttcagcgaaatggcgtaccgattggacag 265 |||| |||||||||||||| ||||||||| Sbjct: 28046203 ttcaacgaaatggcgtaccaattggacag 28046175 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 gttggttggtttcttgatcc 31 |||||||||||||||||||| Sbjct: 17594725 gttggttggtttcttgatcc 17594706
>ref|XM_469436.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1849 Score = 107 bits (54), Expect = 3e-20 Identities = 168/206 (81%) Strand = Plus / Plus Query: 278 aattggctttacatcgtcccaacaggcatgtatggatgtgtgaactacataagggagaag 337 ||||||||||||||||| ||| || ||||| ||||||||||||||||| | | ||||| Sbjct: 1245 aattggctttacatcgtgccatgggggatgtacggatgtgtgaactacatcaagcagaag 1304 Query: 338 tacaacaacccgacgatcattatatccgaaaacggaatggatcaacccgcgaacctgacc 397 ||| || ||||| || | ||| | |||||||||||||||||||| |||||||| | | Sbjct: 1305 tacgggaatccgacagtcgtcataactgaaaacggaatggatcaacctgcgaacctcagc 1364 Query: 398 cgcgaggagttcctgcacgacgcctcgagggtcgagttctacaagacctacctcgccgag 457 ||||| ||| | ||| |||| || ||||||| | ||||||| || ||||||| || || Sbjct: 1365 cgcgaccagtacttgcgcgacaccacgagggttcatttctacaggagctacctcacccag 1424 Query: 458 ctgaagaaggcgatcgacgacggcgc 483 ||||||||||| |||||||| ||||| Sbjct: 1425 ctgaagaaggccatcgacgagggcgc 1450 Score = 40.1 bits (20), Expect = 6.7 Identities = 99/124 (79%), Gaps = 1/124 (0%) Strand = Plus / Plus Query: 4 acttccatgttggttggtttcttgatccctac-taaatggtcaatacccgaagaccatgc 62 ||||||| ||||||||| ||||||||| | ||||||| || |||||| ||| |||| Sbjct: 970 acttccacattggttggtatcttgatccattgataaatggacattacccgcagataatgc 1029 Query: 63 aagatatagtaaaagagaggttacctagtttcacacctgaacaatctaagttggtcaagg 122 ||||| | || ||||| ||| | || | ||||| ||||||||| ||| |||||||||| Sbjct: 1030 aagatcttgtgaaagataggctgcccaagttcactcctgaacaagctagattggtcaagg 1089 Query: 123 gctc 126 |||| Sbjct: 1090 gctc 1093
>gb|U28047.2|OSU28047 Oryza sativa beta-glucosidase mRNA, complete cds Length = 1909 Score = 107 bits (54), Expect = 3e-20 Identities = 168/206 (81%) Strand = Plus / Plus Query: 278 aattggctttacatcgtcccaacaggcatgtatggatgtgtgaactacataagggagaag 337 ||||||||||||||||| ||| || ||||| ||||||||||||||||| | | ||||| Sbjct: 1256 aattggctttacatcgtgccatgggggatgtacggatgtgtgaactacatcaagcagaag 1315 Query: 338 tacaacaacccgacgatcattatatccgaaaacggaatggatcaacccgcgaacctgacc 397 ||| || ||||| || | ||| | |||||||||||||||||||| |||||||| | | Sbjct: 1316 tacgggaatccgacagtcgtcataactgaaaacggaatggatcaacctgcgaacctcagc 1375 Query: 398 cgcgaggagttcctgcacgacgcctcgagggtcgagttctacaagacctacctcgccgag 457 ||||| ||| | ||| |||| || ||||||| | ||||||| || ||||||| || || Sbjct: 1376 cgcgaccagtacttgcgcgacaccacgagggttcatttctacaggagctacctcacccag 1435 Query: 458 ctgaagaaggcgatcgacgacggcgc 483 ||||||||||| |||||||| ||||| Sbjct: 1436 ctgaagaaggccatcgacgagggcgc 1461
>dbj|AK103027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117C01, full insert sequence Length = 1857 Score = 107 bits (54), Expect = 3e-20 Identities = 168/206 (81%) Strand = Plus / Plus Query: 278 aattggctttacatcgtcccaacaggcatgtatggatgtgtgaactacataagggagaag 337 ||||||||||||||||| ||| || ||||| ||||||||||||||||| | | ||||| Sbjct: 1247 aattggctttacatcgtgccatgggggatgtacggatgtgtgaactacatcaagcagaag 1306 Query: 338 tacaacaacccgacgatcattatatccgaaaacggaatggatcaacccgcgaacctgacc 397 ||| || ||||| || | ||| | |||||||||||||||||||| |||||||| | | Sbjct: 1307 tacgggaatccgacagtcgtcataactgaaaacggaatggatcaacctgcgaacctcagc 1366 Query: 398 cgcgaggagttcctgcacgacgcctcgagggtcgagttctacaagacctacctcgccgag 457 ||||| ||| | ||| |||| || ||||||| | ||||||| || ||||||| || || Sbjct: 1367 cgcgaccagtacttgcgcgacaccacgagggttcatttctacaggagctacctcacccag 1426 Query: 458 ctgaagaaggcgatcgacgacggcgc 483 ||||||||||| |||||||| ||||| Sbjct: 1427 ctgaagaaggccatcgacgagggcgc 1452 Score = 40.1 bits (20), Expect = 6.7 Identities = 99/124 (79%), Gaps = 1/124 (0%) Strand = Plus / Plus Query: 4 acttccatgttggttggtttcttgatccctac-taaatggtcaatacccgaagaccatgc 62 ||||||| ||||||||| ||||||||| | ||||||| || |||||| ||| |||| Sbjct: 972 acttccacattggttggtatcttgatccattgataaatggacattacccgcagataatgc 1031 Query: 63 aagatatagtaaaagagaggttacctagtttcacacctgaacaatctaagttggtcaagg 122 ||||| | || ||||| ||| | || | ||||| ||||||||| ||| |||||||||| Sbjct: 1032 aagatcttgtgaaagataggctgcccaagttcactcctgaacaagctagattggtcaagg 1091 Query: 123 gctc 126 |||| Sbjct: 1092 gctc 1095
>dbj|AK100165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023021K07, full insert sequence Length = 1894 Score = 107 bits (54), Expect = 3e-20 Identities = 168/206 (81%) Strand = Plus / Plus Query: 278 aattggctttacatcgtcccaacaggcatgtatggatgtgtgaactacataagggagaag 337 ||||||||||||||||| ||| || ||||| ||||||||||||||||| | | ||||| Sbjct: 1251 aattggctttacatcgtgccatgggggatgtacggatgtgtgaactacatcaagcagaag 1310 Query: 338 tacaacaacccgacgatcattatatccgaaaacggaatggatcaacccgcgaacctgacc 397 ||| || ||||| || | ||| | |||||||||||||||||||| |||||||| | | Sbjct: 1311 tacgggaatccgacagtcgtcataactgaaaacggaatggatcaacctgcgaacctcagc 1370 Query: 398 cgcgaggagttcctgcacgacgcctcgagggtcgagttctacaagacctacctcgccgag 457 ||||| ||| | ||| |||| || ||||||| | ||||||| || ||||||| || || Sbjct: 1371 cgcgaccagtacttgcgcgacaccacgagggttcatttctacaggagctacctcacccag 1430 Query: 458 ctgaagaaggcgatcgacgacggcgc 483 ||||||||||| |||||||| ||||| Sbjct: 1431 ctgaagaaggccatcgacgagggcgc 1456 Score = 40.1 bits (20), Expect = 6.7 Identities = 99/124 (79%), Gaps = 1/124 (0%) Strand = Plus / Plus Query: 4 acttccatgttggttggtttcttgatccctac-taaatggtcaatacccgaagaccatgc 62 ||||||| ||||||||| ||||||||| | ||||||| || |||||| ||| |||| Sbjct: 976 acttccacattggttggtatcttgatccattgataaatggacattacccgcagataatgc 1035 Query: 63 aagatatagtaaaagagaggttacctagtttcacacctgaacaatctaagttggtcaagg 122 ||||| | || ||||| ||| | || | ||||| ||||||||| ||| |||||||||| Sbjct: 1036 aagatcttgtgaaagataggctgcccaagttcactcctgaacaagctagattggtcaagg 1095 Query: 123 gctc 126 |||| Sbjct: 1096 gctc 1099
>dbj|AK059920.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-G08, full insert sequence Length = 1302 Score = 107 bits (54), Expect = 3e-20 Identities = 168/206 (81%) Strand = Plus / Plus Query: 278 aattggctttacatcgtcccaacaggcatgtatggatgtgtgaactacataagggagaag 337 ||||||||||||||||| ||| || ||||| ||||||||||||||||| | | ||||| Sbjct: 692 aattggctttacatcgtgccatgggggatgtacggatgtgtgaactacatcaagcagaag 751 Query: 338 tacaacaacccgacgatcattatatccgaaaacggaatggatcaacccgcgaacctgacc 397 ||| || ||||| || | ||| | |||||||||||||||||||| |||||||| | | Sbjct: 752 tacgggaatccgacagtcgtcataactgaaaacggaatggatcaacctgcgaacctcagc 811 Query: 398 cgcgaggagttcctgcacgacgcctcgagggtcgagttctacaagacctacctcgccgag 457 ||||| ||| | ||| |||| || ||||||| | ||||||| || ||||||| || || Sbjct: 812 cgcgaccagtacttgcgcgacaccacgagggttcatttctacaggagctacctcacccag 871 Query: 458 ctgaagaaggcgatcgacgacggcgc 483 ||||||||||| |||||||| ||||| Sbjct: 872 ctgaagaaggccatcgacgagggcgc 897 Score = 40.1 bits (20), Expect = 6.7 Identities = 99/124 (79%), Gaps = 1/124 (0%) Strand = Plus / Plus Query: 4 acttccatgttggttggtttcttgatccctac-taaatggtcaatacccgaagaccatgc 62 ||||||| ||||||||| ||||||||| | ||||||| || |||||| ||| |||| Sbjct: 417 acttccacattggttggtatcttgatccattgataaatggacattacccgcagataatgc 476 Query: 63 aagatatagtaaaagagaggttacctagtttcacacctgaacaatctaagttggtcaagg 122 ||||| | || ||||| ||| | || | ||||| ||||||||| ||| |||||||||| Sbjct: 477 aagatcttgtgaaagataggctgcccaagttcactcctgaacaagctagattggtcaagg 536 Query: 123 gctc 126 |||| Sbjct: 537 gctc 540
>dbj|AK105026.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-H02, full insert sequence Length = 1846 Score = 99.6 bits (50), Expect = 8e-18 Identities = 167/206 (81%) Strand = Plus / Plus Query: 278 aattggctttacatcgtcccaacaggcatgtatggatgtgtgaactacataagggagaag 337 ||||||||||||||||| ||| || ||||| ||||||||| ||||||| | | ||||| Sbjct: 1248 aattggctttacatcgtgccatgggggatgtacggatgtgtggactacatcaagcagaag 1307 Query: 338 tacaacaacccgacgatcattatatccgaaaacggaatggatcaacccgcgaacctgacc 397 ||| || ||||| || | ||| | |||||||||||||||||||| |||||||| | | Sbjct: 1308 tacgggaatccgacagtcgtcataactgaaaacggaatggatcaacctgcgaacctcagc 1367 Query: 398 cgcgaggagttcctgcacgacgcctcgagggtcgagttctacaagacctacctcgccgag 457 ||||| ||| | ||| |||| || ||||||| | ||||||| || ||||||| || || Sbjct: 1368 cgcgaccagtacttgcgcgacaccacgagggttcatttctacaggagctacctcacccag 1427 Query: 458 ctgaagaaggcgatcgacgacggcgc 483 ||||||||||| |||||||| ||||| Sbjct: 1428 ctgaagaaggccatcgacgagggcgc 1453 Score = 40.1 bits (20), Expect = 6.7 Identities = 99/124 (79%), Gaps = 1/124 (0%) Strand = Plus / Plus Query: 4 acttccatgttggttggtttcttgatccctac-taaatggtcaatacccgaagaccatgc 62 ||||||| ||||||||| ||||||||| | ||||||| || |||||| ||| |||| Sbjct: 973 acttccacattggttggtatcttgatccattgataaatggacattacccgcagataatgc 1032 Query: 63 aagatatagtaaaagagaggttacctagtttcacacctgaacaatctaagttggtcaagg 122 ||||| | || ||||| ||| | || | ||||| ||||||||| ||| |||||||||| Sbjct: 1033 aagatcttgtgaaagataggctgcccaagttcactcctgaacaagctagattggtcaagg 1092 Query: 123 gctc 126 |||| Sbjct: 1093 gctc 1096
>gb|BT009232.1| Triticum aestivum clone wle1n.pk0102.g9:fis, full insert mRNA sequence Length = 1023 Score = 61.9 bits (31), Expect = 2e-06 Identities = 103/127 (81%) Strand = Plus / Plus Query: 363 ccgaaaacggaatggatcaacccgcgaacctgacccgcgaggagttcctgcacgacgcct 422 ||||||||||||||||||| || | | ||| |||||||| ||| | ||| ||||| Sbjct: 600 ccgaaaacggaatggatcagccggggggcctcacccgcgaccagtacttgcgggacgcga 659 Query: 423 cgagggtcgagttctacaagacctacctcgccgagctgaagaaggcgatcgacgacggcg 482 |||||||| || |||| || |||||||| ||||||||||||||| ||||||| ||||| Sbjct: 660 cgagggtccggtactaccggagctacctcggcgagctgaagaaggccatcgacggcggcg 719 Query: 483 cgaacgt 489 | ||||| Sbjct: 720 ccaacgt 726 Score = 48.1 bits (24), Expect = 0.027 Identities = 45/52 (86%) Strand = Plus / Plus Query: 243 gaaatggcgtaccgattggacagaaggcgaactccaattggctttacatcgt 294 |||||||| ||||||||||| |||||||| || || |||||||||||||| Sbjct: 480 gaaatggcaaaccgattggaccaaaggcgaattctaactggctttacatcgt 531 Score = 48.1 bits (24), Expect = 0.027 Identities = 66/80 (82%) Strand = Plus / Plus Query: 74 aaagagaggttacctagtttcacacctgaacaatctaagttggtcaagggctctgtagat 133 ||||||||||| || || ||||| || || || |||| |||||||||||||| | ||| Sbjct: 311 aaagagaggttgcccaggttcactcccgatgaagctaaattggtcaagggctcagcagac 370 Query: 134 tacattgggataaatcagta 153 ||||||||||| || ||||| Sbjct: 371 tacattgggatcaaccagta 390
>ref|NM_193731.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1389 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Plus Query: 423 cgagggtcgagttctacaagacctacctcgccgagctgaagaaggcgatcgacgacggcg 482 ||||||||| | ||||| || |||| || || |||||||| |||||||||||||||||| Sbjct: 1166 cgagggtcgcctactacaggagctacatcaccaagctgaaggaggcgatcgacgacggcg 1225 Query: 483 c 483 | Sbjct: 1226 c 1226
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Plus Query: 423 cgagggtcgagttctacaagacctacctcgccgagctgaagaaggcgatcgacgacggcg 482 ||||||||| | ||||| || |||| || || |||||||| |||||||||||||||||| Sbjct: 17760582 cgagggtcgcctactacaggagctacatcaccaagctgaaggaggcgatcgacgacggcg 17760641 Query: 483 c 483 | Sbjct: 17760642 c 17760642
>dbj|AP003217.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0094H06 Length = 147245 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Plus Query: 423 cgagggtcgagttctacaagacctacctcgccgagctgaagaaggcgatcgacgacggcg 482 ||||||||| | ||||| || |||| || || |||||||| |||||||||||||||||| Sbjct: 142117 cgagggtcgcctactacaggagctacatcaccaagctgaaggaggcgatcgacgacggcg 142176 Query: 483 c 483 | Sbjct: 142177 c 142177
>dbj|AP003435.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0455H03 Length = 175947 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Plus Query: 423 cgagggtcgagttctacaagacctacctcgccgagctgaagaaggcgatcgacgacggcg 482 ||||||||| | ||||| || |||| || || |||||||| |||||||||||||||||| Sbjct: 7704 cgagggtcgcctactacaggagctacatcaccaagctgaaggaggcgatcgacgacggcg 7763 Query: 483 c 483 | Sbjct: 7764 c 7764
>dbj|AK069177.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006J10, full insert sequence Length = 1833 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Plus Query: 423 cgagggtcgagttctacaagacctacctcgccgagctgaagaaggcgatcgacgacggcg 482 ||||||||| | ||||| || |||| || || |||||||| |||||||||||||||||| Sbjct: 1487 cgagggtcgcctactacaggagctacatcaccaagctgaaggaggcgatcgacgacggcg 1546 Query: 483 c 483 | Sbjct: 1547 c 1547
>dbj|AK060988.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C08, full insert sequence Length = 1113 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Plus Query: 423 cgagggtcgagttctacaagacctacctcgccgagctgaagaaggcgatcgacgacggcg 482 ||||||||| | ||||| || |||| || || |||||||| |||||||||||||||||| Sbjct: 786 cgagggtcgcctactacaggagctacatcaccaagctgaaggaggcgatcgacgacggcg 845 Query: 483 c 483 | Sbjct: 846 c 846
>gb|AY110303.1| Zea mays CL26208_1 mRNA sequence Length = 592 Score = 50.1 bits (25), Expect = 0.007 Identities = 103/129 (79%) Strand = Plus / Minus Query: 363 ccgaaaacggaatggatcaacccgcgaacctgacccgcgaggagttcctgcacgacgcct 422 |||| |||||||||||||| || | ||| ||||||| | ||| |||||||||| || Sbjct: 433 ccgagaacggaatggatcagcctggaaacttgacccgtggccagtacctgcacgacacca 374 Query: 423 cgagggtcgagttctacaagacctacctcgccgagctgaagaaggcgatcgacgacggcg 482 | ||||| | |||||||| ||||||||| ||||||| ||| || ||||| ||||||| Sbjct: 373 caagggtgcaattctacaaaggctacctcgctgagctgaggaaagccatcgatgacggcg 314 Query: 483 cgaacgtgg 491 | ||||||| Sbjct: 313 ccaacgtgg 305 Score = 44.1 bits (22), Expect = 0.43 Identities = 49/58 (84%) Strand = Plus / Minus Query: 267 aggcgaactccaattggctttacatcgtcccaacaggcatgtatggatgtgtgaacta 324 ||||||| || || |||||||||||||||||| ||| ||||| || || |||||||| Sbjct: 529 aggcgaattcgaagtggctttacatcgtcccagaagggatgtacggttgcgtgaacta 472
>gb|BT016439.1| Zea mays clone Contig272 mRNA sequence Length = 1566 Score = 48.1 bits (24), Expect = 0.027 Identities = 99/124 (79%) Strand = Plus / Plus Query: 368 aacggaatggatcaacccgcgaacctgacccgcgaggagttcctgcacgacgcctcgagg 427 ||||||||||| || || | ||| ||||||| || ||| ||||| ||||||| ||||| Sbjct: 1088 aacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacgagg 1147 Query: 428 gtcgagttctacaagacctacctcgccgagctgaagaaggcgatcgacgacggcgcgaac 487 || |||||||| || |||| ||| | ||||||||||||| || ||| | || |||||| Sbjct: 1148 gtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcgaac 1207 Query: 488 gtgg 491 |||| Sbjct: 1208 gtgg 1211
>gb|AY109400.1| Zea mays CL1052_1 mRNA sequence Length = 2031 Score = 48.1 bits (24), Expect = 0.027 Identities = 99/124 (79%) Strand = Plus / Plus Query: 368 aacggaatggatcaacccgcgaacctgacccgcgaggagttcctgcacgacgcctcgagg 427 ||||||||||| || || | ||| ||||||| || ||| ||||| ||||||| ||||| Sbjct: 1085 aacggaatggaccagcctggaaacttgacccgagaccagtacctgcgcgacgccacgagg 1144 Query: 428 gtcgagttctacaagacctacctcgccgagctgaagaaggcgatcgacgacggcgcgaac 487 || |||||||| || |||| ||| | ||||||||||||| || ||| | || |||||| Sbjct: 1145 gtgcggttctacaggagctacatcggccagctgaagaaggccatagaccagggagcgaac 1204 Query: 488 gtgg 491 |||| Sbjct: 1205 gtgg 1208
>gb|AY110888.1| Zea mays CL3094_1 mRNA sequence Length = 588 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Minus Query: 445 ctacctcgccgagctgaagaaggcgatcgacgacggcgc 483 |||| |||||||||||||| ||||||||||| |||||| Sbjct: 360 ctacgtcgccgagctgaaggcggcgatcgacggcggcgc 322
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 462 agaaggcgatcgacgacggcgc 483 |||||||||||||||||||||| Sbjct: 450392 agaaggcgatcgacgacggcgc 450371
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 449 ctcgccgagctgaagaaggcg 469 ||||||||||||||||||||| Sbjct: 1981405 ctcgccgagctgaagaaggcg 1981425
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 449 ctcgccgagctgaagaaggcg 469 ||||||||||||||||||||| Sbjct: 1450832 ctcgccgagctgaagaaggcg 1450812
>emb|AL391194.13| Human DNA sequence from clone RP11-352G14 on chromosome 6 Contains the SLC17A4 gene for solute carrier family 17 (sodium phosphate) member 4 and the 3' end of the SLC17A1 gene for solute carrier family 17 (sodium phosphate) member 1, complete sequence Length = 48243 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 ttggttggtttcttgatccct 33 ||||||||||||||||||||| Sbjct: 14887 ttggttggtttcttgatccct 14907
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 449 ctcgccgagctgaagaaggcg 469 ||||||||||||||||||||| Sbjct: 1338027 ctcgccgagctgaagaaggcg 1338007
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 gcagaccaaccaacgctccag 190 ||||||||||||||||||||| Sbjct: 2584979 gcagaccaaccaacgctccag 2584999
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 400 cgaggagttcctgcacgacgc 420 ||||||||||||||||||||| Sbjct: 4051647 cgaggagttcctgcacgacgc 4051627
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 449 ctcgccgagctgaagaaggcg 469 ||||||||||||||||||||| Sbjct: 1145957 ctcgccgagctgaagaaggcg 1145937
>ref|XM_468767.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1792 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 gttggttggtttcttgatcc 31 |||||||||||||||||||| Sbjct: 190 gttggttggtttcttgatcc 209
>gb|AC137999.2| Oryza sativa chromosome 3 BAC OSJNBa0020H02 genomic sequence, complete sequence Length = 97152 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 gttggttggtttcttgatcc 31 |||||||||||||||||||| Sbjct: 53893 gttggttggtttcttgatcc 53912
>emb|AL162727.20| Human DNA sequence from clone RP11-168K11 on chromosome 9 Contains the 3' end of the RGS3 gene for regulator of G-protein signalling 3, a novel gene, a novel gene (FLJ31516) and the 5' end of a novel gene, complete sequence Length = 112099 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 171 cagaccaaccaacgctccagcaaccaccaaca 202 ||||||||||||| |||| |||||||||||| Sbjct: 100484 cagaccaaccaactgtccatcaaccaccaaca 100453
>gb|AC134265.6| Rattus norvegicus 13 BAC CH230-151K3 (Children's Hospital Oakland Research Institute) complete sequence Length = 209981 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 atgtgtgaactacataaggg 332 |||||||||||||||||||| Sbjct: 126929 atgtgtgaactacataaggg 126910
>emb|CR457482.5| Zebrafish DNA sequence from clone CH211-159P3 in linkage group 15, complete sequence Length = 158288 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 gcatgttcaatatatatttc 239 |||||||||||||||||||| Sbjct: 131953 gcatgttcaatatatatttc 131934
>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25, complete sequence Length = 169168 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 458 ctgaagaaggcgatcgacga 477 |||||||||||||||||||| Sbjct: 35052 ctgaagaaggcgatcgacga 35033
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 gcgaggagttcctgcacgac 418 |||||||||||||||||||| Sbjct: 2581133 gcgaggagttcctgcacgac 2581114
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 cctgacccgcgaggagttcc 410 |||||||||||||||||||| Sbjct: 1287793 cctgacccgcgaggagttcc 1287774
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 401 gaggagttcctgcacgacgcctcg 424 |||||||||||||||| ||||||| Sbjct: 875272 gaggagttcctgcacgtcgcctcg 875295
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 464 aaggcgatcgacgacggcgc 483 |||||||||||||||||||| Sbjct: 3958608 aaggcgatcgacgacggcgc 3958589
>dbj|AK105583.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-E09, full insert sequence Length = 1792 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 gttggttggtttcttgatcc 31 |||||||||||||||||||| Sbjct: 190 gttggttggtttcttgatcc 209
>gb|AC147900.2| Xenopus tropicalis clone CH216-53P23, complete sequence Length = 157316 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 ttacattgggataaatcagt 152 |||||||||||||||||||| Sbjct: 42171 ttacattgggataaatcagt 42152
>dbj|AP000684.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-57N12, complete sequences Length = 141977 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 tacataagggagaagtacaa 342 |||||||||||||||||||| Sbjct: 64473 tacataagggagaagtacaa 64454
>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome Length = 2178400 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 323 tacataagggagaagtacaacaac 346 |||||||||||||||| ||||||| Sbjct: 1034067 tacataagggagaagttcaacaac 1034044
>dbj|AB009410.1| Bacillus sp. gene for beta-glucosidase, complete cds Length = 2869 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 451 cgccgagctgaagaaggcgatcgacgac 478 |||||||||||| |||||| |||||||| Sbjct: 291 cgccgagctgaacaaggcgctcgacgac 318 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,634,527 Number of Sequences: 3902068 Number of extensions: 3634527 Number of successful extensions: 71844 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71044 Number of HSP's gapped (non-prelim): 795 length of query: 494 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 472 effective length of database: 17,147,199,772 effective search space: 8093478292384 effective search space used: 8093478292384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
