ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags16o11 |
|---|---|
| Clone Library Name | barley_pub |
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein type 3| Length = 1333 Score = 62.8 bits (151), Expect = 7e-10 Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 13/161 (8%) Frame = +2 Query: 113 RIWLGGGTSIQQKIIQAFHDSPVGGHSGSPVTYRRIRKLFAWPNMKTHIQHYVLSCTVCQ 292 +I L T + + II+ +H+ H G + I + F W ++ IQ YV +C CQ Sbjct: 902 QILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQ 961 Query: 293 QAKLDRTASXXXXXXXXXXXXXXXXXSMDFVDGLPQS-------------SKFSYFIPLA 433 K SMDF+ LP+S SK + +P Sbjct: 962 INKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCT 1021 Query: 434 HPYTEAIAAQLYLQQIYKIHGLPTAIVSDYDPVFTSHFWQE 556 T A+++ Q++ G P I++D D +FTS W++ Sbjct: 1022 KSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKD 1062
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein type 2| Length = 1333 Score = 62.8 bits (151), Expect = 7e-10 Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 13/161 (8%) Frame = +2 Query: 113 RIWLGGGTSIQQKIIQAFHDSPVGGHSGSPVTYRRIRKLFAWPNMKTHIQHYVLSCTVCQ 292 +I L T + + II+ +H+ H G + I + F W ++ IQ YV +C CQ Sbjct: 902 QILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQ 961 Query: 293 QAKLDRTASXXXXXXXXXXXXXXXXXSMDFVDGLPQS-------------SKFSYFIPLA 433 K SMDF+ LP+S SK + +P Sbjct: 962 INKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCT 1021 Query: 434 HPYTEAIAAQLYLQQIYKIHGLPTAIVSDYDPVFTSHFWQE 556 T A+++ Q++ G P I++D D +FTS W++ Sbjct: 1022 KSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKD 1062
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein type 1| Length = 1333 Score = 62.8 bits (151), Expect = 7e-10 Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 13/161 (8%) Frame = +2 Query: 113 RIWLGGGTSIQQKIIQAFHDSPVGGHSGSPVTYRRIRKLFAWPNMKTHIQHYVLSCTVCQ 292 +I L T + + II+ +H+ H G + I + F W ++ IQ YV +C CQ Sbjct: 902 QILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQ 961 Query: 293 QAKLDRTASXXXXXXXXXXXXXXXXXSMDFVDGLPQS-------------SKFSYFIPLA 433 K SMDF+ LP+S SK + +P Sbjct: 962 INKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCT 1021 Query: 434 HPYTEAIAAQLYLQQIYKIHGLPTAIVSDYDPVFTSHFWQE 556 T A+++ Q++ G P I++D D +FTS W++ Sbjct: 1022 KSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKD 1062
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from transposon 412| [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] Length = 1237 Score = 51.2 bits (121), Expect = 2e-06 Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 15/138 (10%) Frame = +2 Query: 143 QQKIIQAFHDSPV-GGHSGSPVTYRRIRKLFAWPNMKTHIQHYVLSCTVCQQAKLDRTAS 319 ++ I+ HD P+ GGH+G T ++++ + W NM +I+ YV C CQ+AK + Sbjct: 893 KEAILSTLHDDPIQGGHTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTK 952 Query: 320 XXXXXXXXXXXXXXXXXSMDFVDGLPQS--------------SKFSYFIPLAHPYTEAIA 457 +D + LP+S +K+ IP+A+ + +A Sbjct: 953 TPMTITETPEHAFDRVV-VDTIGPLPKSENGNEYAVTLICDLTKYLVAIPIANKSAKTVA 1011 Query: 458 AQLYLQQIYKIHGLPTAI 511 ++ I K + T I Sbjct: 1012 KAIFESFILKYGPMKTFI 1029
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 886 Score = 41.2 bits (95), Expect = 0.002 Identities = 41/166 (24%), Positives = 59/166 (35%), Gaps = 13/166 (7%) Frame = +2 Query: 137 SIQQKIIQAFHDSPVGGHSGSPVTYRRIRKLFAWPNMKTHIQHYVLSCTVCQQAKLDRTA 316 S +QKI+ H+ H+G T +I L+ WPNM+ + + C C A Sbjct: 606 SDRQKIVLQAHNL---AHTGREATLLKIANLYWWPNMRKDVVKQLGRCQQCLITNASNKA 662 Query: 317 SXXXXXXXXXXXXXXXXXSMDFVDGLPQS-------------SKFSYFIPLAHPYTEAIA 457 S +D++ LP S + F++ P P T A Sbjct: 663 SGPILRPDRPQKPFDKFF-IDYIGPLPPSQGYLYVLVVVDGMTGFTWLYPTKAPSTSATV 721 Query: 458 AQLYLQQIYKIHGLPTAIVSDYDPVFTSHFWQELFKPSGTKLRLST 595 L + +P I SD FTS + E K G L ST Sbjct: 722 KSL---NVLTSIAIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFST 764
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6| Length = 1268 Score = 40.0 bits (92), Expect = 0.005 Identities = 33/159 (20%), Positives = 64/159 (40%), Gaps = 5/159 (3%) Frame = +2 Query: 137 SIQQKIIQAFHDSPVGGHSGSPVTYRRIRKLFAWPNMKTHIQHYVLSCTVCQQ-AKLDRT 313 S+Q+ +++ H+ GH G ++ R W + + I++ V C CQ+ +K+ R Sbjct: 781 SLQKIVLKQLHE----GHPGIVQMKQKARSFVFWRGLDSDIENMVRHCNNCQENSKMPRV 836 Query: 314 ASXXXXXXXXXXXXXXXXXSMDFVDG----LPQSSKFSYFIPLAHPYTEAIAAQLYLQQI 481 ++G + +K Y A+ L++I Sbjct: 837 VPLNPWPVPEAPWKRIHIDFAGPLNGCYLLVVVDAKTKYAEVKLTRSISAVTTIDLLEEI 896 Query: 482 YKIHGLPTAIVSDYDPVFTSHFWQELFKPSGTKLRLSTI 598 + IHG P I+SD TSH + ++ + G + + S + Sbjct: 897 FSIHGYPETIISDNGTQLTSHLFAQMCQSHGIEHKTSAV 935
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III| Length = 2186 Score = 37.7 bits (86), Expect = 0.025 Identities = 13/50 (26%), Positives = 27/50 (54%) Frame = +2 Query: 140 IQQKIIQAFHDSPVGGHSGSPVTYRRIRKLFAWPNMKTHIQHYVLSCTVC 289 I+ +++ H+ + GH G +R + + F WP M+ +++ V +C C Sbjct: 1464 IRTPLLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKC 1513
>POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1189 Score = 37.7 bits (86), Expect = 0.025 Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 12/132 (9%) Frame = +2 Query: 230 FAWPNMKTHIQHYVLSCTVCQQAKLDRTASXXXXXXXXXXXXXXXXXSMDFVDGLPQSSK 409 F P T I+ +C VCQQ ++ A+ +DF + P + Sbjct: 864 FLIPRASTLIEQVTSACKVCQQ--VNAGATRVPAGKRTRGNRPGVYWEIDFTEVKPHYAG 921 Query: 410 FSYFIPLAHPY------------TEAIAAQLYLQQIYKIHGLPTAIVSDYDPVFTSHFWQ 553 + Y + + T I A+ L++I+ GLP I SD P F S Q Sbjct: 922 YKYLLVFVDTFSGWVEAFPTRQETAHIVAKKILEEIFPRFGLPKVIGSDNGPAFVSQVSQ 981 Query: 554 ELFKPSGTKLRL 589 L + G +L Sbjct: 982 GLARILGINWKL 993
>ZBT11_HUMAN (O95625) Zinc finger and BTB domain-containing protein 11| Length = 1053 Score = 37.0 bits (84), Expect = 0.043 Identities = 17/57 (29%), Positives = 31/57 (54%) Frame = +2 Query: 143 QQKIIQAFHDSPVGGHSGSPVTYRRIRKLFAWPNMKTHIQHYVLSCTVCQQAKLDRT 313 ++ +I+A H P G H T+ + K + W + ++ Y+ C+ CQ+ KLDR+ Sbjct: 71 RRDLIEAAHLGPGGTHHTRHQTWHYLSKTYWWRGILKQVKDYIKQCSKCQE-KLDRS 126
>POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] (Fragment) Length = 1046 Score = 36.2 bits (82), Expect = 0.073 Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 12/132 (9%) Frame = +2 Query: 230 FAWPNMKTHIQHYVLSCTVCQQAKLDRTASXXXXXXXXXXXXXXXXXSMDFVDGLPQSSK 409 F P T I+ +C VCQQ ++ A+ +DF + P + Sbjct: 721 FLIPKAGTLIEQVTSACKVCQQ--VNAGATRVPEGKRTRGNRPGVYWEIDFTEVKPHYAG 778 Query: 410 FSYFIPLAHPY------------TEAIAAQLYLQQIYKIHGLPTAIVSDYDPVFTSHFWQ 553 + Y + + T + A+ L++I+ GLP I SD P F S Q Sbjct: 779 YKYLLVFVDTFSGWVEAYPTRQETAHMVAKKILEEIFPRFGLPKVIGSDNGPAFVSQVSQ 838 Query: 554 ELFKPSGTKLRL 589 L + G +L Sbjct: 839 GLARTLGINWKL 850
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1161 Score = 35.8 bits (81), Expect = 0.096 Identities = 35/164 (21%), Positives = 57/164 (34%), Gaps = 13/164 (7%) Frame = +2 Query: 143 QQKIIQAFHDSPVGGHSGSPVTYRRIRKLFAWPNMKTHIQHYVLSCTVCQQAKLDRTASX 322 ++KII H+ H+G T+ ++ + WPN++ + + C C S Sbjct: 816 REKIISTAHNI---AHTGRDATFLKVSSKYWWPNLRKDVVKSIRQCKQCLVTNATNLTSP 872 Query: 323 XXXXXXXXXXXXXXXXSMDFVDGLPQS-------------SKFSYFIPLAHPYTEAIAAQ 463 +D++ LP S + F + P P T A Sbjct: 873 PILRPVKPLKPFDKFY-IDYIGPLPPSNGYLHVLVVVDSMTGFVWLYPTKAPSTSATVKA 931 Query: 464 LYLQQIYKIHGLPTAIVSDYDPVFTSHFWQELFKPSGTKLRLST 595 L + I P + SD FTS + + K G +L ST Sbjct: 932 LNMLTSIAI---PKVLHSDQGAAFTSSTFADWAKEKGIQLEFST 972
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1157 Score = 32.7 bits (73), Expect = 0.81 Identities = 31/149 (20%), Positives = 51/149 (34%), Gaps = 13/149 (8%) Frame = +2 Query: 188 HSGSPVTYRRIRKLFAWPNMKTHIQHYVLSCTVCQQAKLDRTASXXXXXXXXXXXXXXXX 367 H+G T+ ++ + WPN++ + + C C T + Sbjct: 830 HTGRDSTFLKVSSKYWWPNLRKDVVKVIRQCKQCLVTNA-ATLAAPPILRPERPVKPFDK 888 Query: 368 XSMDFVDGLPQS-------------SKFSYFIPLAHPYTEAIAAQLYLQQIYKIHGLPTA 508 +D++ LP S + F + P P T A L + + P Sbjct: 889 FFIDYIGPLPPSNGYLHVLVVVDSMTGFVWLYPTKAPSTSATVKALNMLTSIAV---PKV 945 Query: 509 IVSDYDPVFTSHFWQELFKPSGTKLRLST 595 I SD FTS + + K G +L ST Sbjct: 946 IHSDQGAAFTSATFADWAKNKGIQLEFST 974
>MYOB_DICDI (P34092) Myosin IB heavy chain| Length = 1111 Score = 31.6 bits (70), Expect = 1.8 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +3 Query: 51 QSRRTQKVDSSYSKDSFDFEGEFGLAEALVFNRKSSR 161 + R+ +D ++ D DFE +FGL EA+ K R Sbjct: 729 KERQRNSIDRKFTSDYIDFENQFGLQEAMQNAHKKER 765
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1196 Score = 31.2 bits (69), Expect = 2.4 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 12/118 (10%) Frame = +2 Query: 242 NMKTHIQHYVLSCTVCQQAKLDRTASXXXXXXXXXXXXXXXXXSMDFVDGLPQSSKFSYF 421 N +Q+ SCTVC A+++ + + +DF + P + Y Sbjct: 873 NRDKTLQYVADSCTVC--AQVNASKAKIGAGVRVRGHRPGSHWEIDFTEVKPGLYGYKYL 930 Query: 422 IPLAHPY------------TEAIAAQLYLQQIYKIHGLPTAIVSDYDPVFTSHFWQEL 559 + + T + ++ L++I+ G+P + SD P FTS Q + Sbjct: 931 LVFVDTFSGWVEAFPTKRETARVVSKKLLEEIFPRFGMPQVLGSDNGPAFTSQVSQSV 988
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from transposon gypsy| [Includes: Reverse transcriptase (EC 2.7.7.49); Endonuclease] Length = 1035 Score = 30.8 bits (68), Expect = 3.1 Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 8/151 (5%) Frame = +2 Query: 143 QQKIIQAFHDSPVGGHSGSPVTYRRIRKLFAWPNMKTHIQHYVLSCTVCQQAKLDRTASX 322 Q +I+ A H+ H + +++ + + +P M + + V +C VC QAK DR Sbjct: 738 QIEIVTAEHNR---AHRAAQENIKQVLRDYYFPKMGSLAKEVVANCRVCTQAKYDRHPKK 794 Query: 323 XXXXXXXXXXXXXXXXSMD--------FVDGLPQSSKFSYFIPLAHPYTEAIAAQLYLQQ 478 +D F+ + + SK++ P+ I A L Q Sbjct: 795 QELGETPIPSYTGEMVHIDIFSTDRKLFLTCIDKFSKYAIVQPVVSRTIVDITAPLL--Q 852 Query: 479 IYKIHGLPTAIVSDYDPVFTSHFWQELFKPS 571 I + + D +P F S + K S Sbjct: 853 IINLFPNIKTVYCDNEPAFNSETVTSMLKNS 883
>POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] (Fragment) Length = 581 Score = 30.4 bits (67), Expect = 4.0 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 12/128 (9%) Frame = +2 Query: 242 NMKTHIQHYVLSCTVCQQAKLDRTASXXXXXXXXXXXXXXXXXSMDFVDGLPQSSKFSYF 421 N +Q+ SCTVC A+++ + + +DF + P + Y Sbjct: 258 NRDKTLQYVADSCTVC--AQVNASKAKIGAGVRVRGHRPGTHWEIDFTEVKPGLYGYKYL 315 Query: 422 IPLAHPY------------TEAIAAQLYLQQIYKIHGLPTAIVSDYDPVFTSHFWQELFK 565 + + T I + L++I+ G+P + +D P F S Q + K Sbjct: 316 LVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMPQVLGTDNGPAFVSQVSQSVAK 375 Query: 566 PSGTKLRL 589 G +L Sbjct: 376 LLGIDWKL 383
>POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1196 Score = 30.4 bits (67), Expect = 4.0 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 12/128 (9%) Frame = +2 Query: 242 NMKTHIQHYVLSCTVCQQAKLDRTASXXXXXXXXXXXXXXXXXSMDFVDGLPQSSKFSYF 421 N +Q+ SCTVC A+++ + + +DF + P + Y Sbjct: 873 NRDKTLQYVADSCTVC--AQVNASKAKIGAGVRVRGHRPGTHWEIDFTEVKPGLYGYKYL 930 Query: 422 IPLAHPY------------TEAIAAQLYLQQIYKIHGLPTAIVSDYDPVFTSHFWQELFK 565 + + T I + L++I+ G+P + +D P F S Q + K Sbjct: 931 LVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMPQVLGTDNGPAFVSQVSQSVAK 990 Query: 566 PSGTKLRL 589 G +L Sbjct: 991 LLGIDWKL 998 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,095,999 Number of Sequences: 219361 Number of extensions: 1873002 Number of successful extensions: 4760 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4670 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4746 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
