ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags16o05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 167 bits (84), Expect = 5e-38 Identities = 186/221 (84%) Strand = Plus / Minus Query: 315 tggtactcgtgtggaggatcactaccgtccaggagagattgcttctcacggngctcgtgt 374 |||| |||| |||||||| | |||||||||||||||| ||||| ||| ||| ||||||| Sbjct: 6607887 tggtgctcgggtggaggagctctaccgtccaggagagcttgctgctcgcggttctcgtgt 6607828 Query: 375 ggaggatctntaccgnccaggagagattgcttctcgtggtgctcgtgtggaggatctcta 434 |||||| || ||||| ||||||||||||| | |||||||| ||||||||||||| ||||| Sbjct: 6607827 ggaggagctctaccgtccaggagagattgttgctcgtggttctcgtgtggaggagctcta 6607768 Query: 435 ccgtccaggagagattgctgctcgtggtgctcgtatggaggatctctaccgtccaggaga 494 |||||| ||||| ||||||||| ||||||| ||||||||||| || ||||||||||| Sbjct: 6607767 tcgtccacgagaggttgctgctcacagtgctcgcatggaggatctgtatcgtccaggaga 6607708 Query: 495 cgttgctgctcgtgatgctcgtatggaggatccctaccgtc 535 || || |||| ||||||| ||||||||| ||||||| Sbjct: 6607707 aattcctatccgtggtgctcgtgtggaggatctgtaccgtc 6607667 Score = 145 bits (73), Expect = 2e-31 Identities = 196/238 (82%) Strand = Plus / Minus Query: 289 taccgcccaggagagcttgctgtccgtggtactcgtgtggaggatcactaccgtccagga 348 ||||| |||||||||||||||| || ||| ||||||||||||| | ||||||||||||| Sbjct: 6607865 taccgtccaggagagcttgctgctcgcggttctcgtgtggaggagctctaccgtccagga 6607806 Query: 349 gagattgcttctcacggngctcgtgtggaggatctntaccgnccaggagagattgcttct 408 ||||||| | ||| || ||||||||||||| || || || ||| ||||| ||||| || Sbjct: 6607805 gagattgttgctcgtggttctcgtgtggaggagctctatcgtccacgagaggttgctgct 6607746 Query: 409 cgtggtgctcgtgtggaggatctctaccgtccaggagagattgctgctcgtggtgctcgt 468 | ||||||| |||||||||| || ||||||||||| ||| || |||||||||||| Sbjct: 6607745 cacagtgctcgcatggaggatctgtatcgtccaggagaaattcctatccgtggtgctcgt 6607686 Query: 469 atggaggatctctaccgtccaggagacgttgctgctcgtgatgctcgtatggaggatc 526 |||||||||| |||||||| ||||| || ||||||||| || |||| | ||||||| Sbjct: 6607685 gtggaggatctgtaccgtcctggagaaatttctgctcgtgctgttcgtgtagaggatc 6607628 Score = 137 bits (69), Expect = 4e-29 Identities = 165/198 (83%) Strand = Plus / Minus Query: 289 taccgcccaggagagcttgctgtccgtggtactcgtgtggaggatcactaccgtccagga 348 ||||| ||||||||| ||| || |||||| ||||||||||||| | ||| |||||| || Sbjct: 6607817 taccgtccaggagagattgttgctcgtggttctcgtgtggaggagctctatcgtccacga 6607758 Query: 349 gagattgcttctcacggngctcgtgtggaggatctntaccgnccaggagagattgcttct 408 ||| ||||| ||||| | ||||| |||||||||| || || |||||||| ||| || Sbjct: 6607757 gaggttgctgctcacagtgctcgcatggaggatctgtatcgtccaggagaaattcctatc 6607698 Query: 409 cgtggtgctcgtgtggaggatctctaccgtccaggagagattgctgctcgtggtgctcgt 468 ||||||||||||||||||||||| |||||||| ||||| ||| ||||||||| || |||| Sbjct: 6607697 cgtggtgctcgtgtggaggatctgtaccgtcctggagaaatttctgctcgtgctgttcgt 6607638 Query: 469 atggaggatctctaccgt 486 | |||||||| |||||| Sbjct: 6607637 gtagaggatctttaccgt 6607620 Score = 129 bits (65), Expect = 1e-26 Identities = 110/125 (88%) Strand = Plus / Minus Query: 400 attgcttctcgtggtgctcgtgtggaggatctctaccgtccaggagagattgctgctcgt 459 |||||||| | ||||||||| |||||||| |||||||||||||||||| |||||||||| Sbjct: 6607898 attgcttcacttggtgctcgggtggaggagctctaccgtccaggagagcttgctgctcgc 6607839 Query: 460 ggtgctcgtatggaggatctctaccgtccaggagacgttgctgctcgtgatgctcgtatg 519 ||| ||||| ||||||| ||||||||||||||||| ||| |||||||| | ||||| || Sbjct: 6607838 ggttctcgtgtggaggagctctaccgtccaggagagattgttgctcgtggttctcgtgtg 6607779 Query: 520 gagga 524 ||||| Sbjct: 6607778 gagga 6607774 Score = 71.9 bits (36), Expect = 2e-09 Identities = 84/100 (84%) Strand = Plus / Minus Query: 459 tggtgctcgtatggaggatctctaccgtccaggagacgttgctgctcgtgatgctcgtat 518 ||||||||| ||||||| ||||||||||||||||| |||||||||| | | ||||| | Sbjct: 6607887 tggtgctcgggtggaggagctctaccgtccaggagagcttgctgctcgcggttctcgtgt 6607828 Query: 519 ggaggatccctaccgtcaaggagggctagatgctcgtggt 558 |||||| | |||||||| ||||| | | | |||||||||| Sbjct: 6607827 ggaggagctctaccgtccaggagagattgttgctcgtggt 6607788 Score = 60.0 bits (30), Expect = 8e-06 Identities = 97/120 (80%) Strand = Plus / Minus Query: 270 tgctcgcctggaggatccttaccgcccaggagagcttgctgtccgtggtactcgtgtgga 329 ||||||| ||||||||| || || |||||||| || || |||||||| |||||||||| Sbjct: 6607740 tgctcgcatggaggatctgtatcgtccaggagaaattcctatccgtggtgctcgtgtgga 6607681 Query: 330 ggatcactaccgtccaggagagattgcttctcacggngctcgtgtggaggatctntaccg 389 ||||| |||||||| ||||| ||| || ||| | | |||||| |||||||| ||||| Sbjct: 6607680 ggatctgtaccgtcctggagaaatttctgctcgtgctgttcgtgtagaggatctttaccg 6607621
>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0425F05 Length = 162858 Score = 167 bits (84), Expect = 5e-38 Identities = 186/221 (84%) Strand = Plus / Minus Query: 315 tggtactcgtgtggaggatcactaccgtccaggagagattgcttctcacggngctcgtgt 374 |||| |||| |||||||| | |||||||||||||||| ||||| ||| ||| ||||||| Sbjct: 42013 tggtgctcgggtggaggagctctaccgtccaggagagcttgctgctcgcggttctcgtgt 41954 Query: 375 ggaggatctntaccgnccaggagagattgcttctcgtggtgctcgtgtggaggatctcta 434 |||||| || ||||| ||||||||||||| | |||||||| ||||||||||||| ||||| Sbjct: 41953 ggaggagctctaccgtccaggagagattgttgctcgtggttctcgtgtggaggagctcta 41894 Query: 435 ccgtccaggagagattgctgctcgtggtgctcgtatggaggatctctaccgtccaggaga 494 |||||| ||||| ||||||||| ||||||| ||||||||||| || ||||||||||| Sbjct: 41893 tcgtccacgagaggttgctgctcacagtgctcgcatggaggatctgtatcgtccaggaga 41834 Query: 495 cgttgctgctcgtgatgctcgtatggaggatccctaccgtc 535 || || |||| ||||||| ||||||||| ||||||| Sbjct: 41833 aattcctatccgtggtgctcgtgtggaggatctgtaccgtc 41793 Score = 145 bits (73), Expect = 2e-31 Identities = 196/238 (82%) Strand = Plus / Minus Query: 289 taccgcccaggagagcttgctgtccgtggtactcgtgtggaggatcactaccgtccagga 348 ||||| |||||||||||||||| || ||| ||||||||||||| | ||||||||||||| Sbjct: 41991 taccgtccaggagagcttgctgctcgcggttctcgtgtggaggagctctaccgtccagga 41932 Query: 349 gagattgcttctcacggngctcgtgtggaggatctntaccgnccaggagagattgcttct 408 ||||||| | ||| || ||||||||||||| || || || ||| ||||| ||||| || Sbjct: 41931 gagattgttgctcgtggttctcgtgtggaggagctctatcgtccacgagaggttgctgct 41872 Query: 409 cgtggtgctcgtgtggaggatctctaccgtccaggagagattgctgctcgtggtgctcgt 468 | ||||||| |||||||||| || ||||||||||| ||| || |||||||||||| Sbjct: 41871 cacagtgctcgcatggaggatctgtatcgtccaggagaaattcctatccgtggtgctcgt 41812 Query: 469 atggaggatctctaccgtccaggagacgttgctgctcgtgatgctcgtatggaggatc 526 |||||||||| |||||||| ||||| || ||||||||| || |||| | ||||||| Sbjct: 41811 gtggaggatctgtaccgtcctggagaaatttctgctcgtgctgttcgtgtagaggatc 41754 Score = 137 bits (69), Expect = 4e-29 Identities = 165/198 (83%) Strand = Plus / Minus Query: 289 taccgcccaggagagcttgctgtccgtggtactcgtgtggaggatcactaccgtccagga 348 ||||| ||||||||| ||| || |||||| ||||||||||||| | ||| |||||| || Sbjct: 41943 taccgtccaggagagattgttgctcgtggttctcgtgtggaggagctctatcgtccacga 41884 Query: 349 gagattgcttctcacggngctcgtgtggaggatctntaccgnccaggagagattgcttct 408 ||| ||||| ||||| | ||||| |||||||||| || || |||||||| ||| || Sbjct: 41883 gaggttgctgctcacagtgctcgcatggaggatctgtatcgtccaggagaaattcctatc 41824 Query: 409 cgtggtgctcgtgtggaggatctctaccgtccaggagagattgctgctcgtggtgctcgt 468 ||||||||||||||||||||||| |||||||| ||||| ||| ||||||||| || |||| Sbjct: 41823 cgtggtgctcgtgtggaggatctgtaccgtcctggagaaatttctgctcgtgctgttcgt 41764 Query: 469 atggaggatctctaccgt 486 | |||||||| |||||| Sbjct: 41763 gtagaggatctttaccgt 41746 Score = 129 bits (65), Expect = 1e-26 Identities = 110/125 (88%) Strand = Plus / Minus Query: 400 attgcttctcgtggtgctcgtgtggaggatctctaccgtccaggagagattgctgctcgt 459 |||||||| | ||||||||| |||||||| |||||||||||||||||| |||||||||| Sbjct: 42024 attgcttcacttggtgctcgggtggaggagctctaccgtccaggagagcttgctgctcgc 41965 Query: 460 ggtgctcgtatggaggatctctaccgtccaggagacgttgctgctcgtgatgctcgtatg 519 ||| ||||| ||||||| ||||||||||||||||| ||| |||||||| | ||||| || Sbjct: 41964 ggttctcgtgtggaggagctctaccgtccaggagagattgttgctcgtggttctcgtgtg 41905 Query: 520 gagga 524 ||||| Sbjct: 41904 gagga 41900 Score = 71.9 bits (36), Expect = 2e-09 Identities = 84/100 (84%) Strand = Plus / Minus Query: 459 tggtgctcgtatggaggatctctaccgtccaggagacgttgctgctcgtgatgctcgtat 518 ||||||||| ||||||| ||||||||||||||||| |||||||||| | | ||||| | Sbjct: 42013 tggtgctcgggtggaggagctctaccgtccaggagagcttgctgctcgcggttctcgtgt 41954 Query: 519 ggaggatccctaccgtcaaggagggctagatgctcgtggt 558 |||||| | |||||||| ||||| | | | |||||||||| Sbjct: 41953 ggaggagctctaccgtccaggagagattgttgctcgtggt 41914 Score = 60.0 bits (30), Expect = 8e-06 Identities = 97/120 (80%) Strand = Plus / Minus Query: 270 tgctcgcctggaggatccttaccgcccaggagagcttgctgtccgtggtactcgtgtgga 329 ||||||| ||||||||| || || |||||||| || || |||||||| |||||||||| Sbjct: 41866 tgctcgcatggaggatctgtatcgtccaggagaaattcctatccgtggtgctcgtgtgga 41807 Query: 330 ggatcactaccgtccaggagagattgcttctcacggngctcgtgtggaggatctntaccg 389 ||||| |||||||| ||||| ||| || ||| | | |||||| |||||||| ||||| Sbjct: 41806 ggatctgtaccgtcctggagaaatttctgctcgtgctgttcgtgtagaggatctttaccg 41747
>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0690H04 Length = 137319 Score = 167 bits (84), Expect = 5e-38 Identities = 186/221 (84%) Strand = Plus / Minus Query: 315 tggtactcgtgtggaggatcactaccgtccaggagagattgcttctcacggngctcgtgt 374 |||| |||| |||||||| | |||||||||||||||| ||||| ||| ||| ||||||| Sbjct: 124263 tggtgctcgggtggaggagctctaccgtccaggagagcttgctgctcgcggttctcgtgt 124204 Query: 375 ggaggatctntaccgnccaggagagattgcttctcgtggtgctcgtgtggaggatctcta 434 |||||| || ||||| ||||||||||||| | |||||||| ||||||||||||| ||||| Sbjct: 124203 ggaggagctctaccgtccaggagagattgttgctcgtggttctcgtgtggaggagctcta 124144 Query: 435 ccgtccaggagagattgctgctcgtggtgctcgtatggaggatctctaccgtccaggaga 494 |||||| ||||| ||||||||| ||||||| ||||||||||| || ||||||||||| Sbjct: 124143 tcgtccacgagaggttgctgctcacagtgctcgcatggaggatctgtatcgtccaggaga 124084 Query: 495 cgttgctgctcgtgatgctcgtatggaggatccctaccgtc 535 || || |||| ||||||| ||||||||| ||||||| Sbjct: 124083 aattcctatccgtggtgctcgtgtggaggatctgtaccgtc 124043 Score = 145 bits (73), Expect = 2e-31 Identities = 196/238 (82%) Strand = Plus / Minus Query: 289 taccgcccaggagagcttgctgtccgtggtactcgtgtggaggatcactaccgtccagga 348 ||||| |||||||||||||||| || ||| ||||||||||||| | ||||||||||||| Sbjct: 124241 taccgtccaggagagcttgctgctcgcggttctcgtgtggaggagctctaccgtccagga 124182 Query: 349 gagattgcttctcacggngctcgtgtggaggatctntaccgnccaggagagattgcttct 408 ||||||| | ||| || ||||||||||||| || || || ||| ||||| ||||| || Sbjct: 124181 gagattgttgctcgtggttctcgtgtggaggagctctatcgtccacgagaggttgctgct 124122 Query: 409 cgtggtgctcgtgtggaggatctctaccgtccaggagagattgctgctcgtggtgctcgt 468 | ||||||| |||||||||| || ||||||||||| ||| || |||||||||||| Sbjct: 124121 cacagtgctcgcatggaggatctgtatcgtccaggagaaattcctatccgtggtgctcgt 124062 Query: 469 atggaggatctctaccgtccaggagacgttgctgctcgtgatgctcgtatggaggatc 526 |||||||||| |||||||| ||||| || ||||||||| || |||| | ||||||| Sbjct: 124061 gtggaggatctgtaccgtcctggagaaatttctgctcgtgctgttcgtgtagaggatc 124004 Score = 137 bits (69), Expect = 4e-29 Identities = 165/198 (83%) Strand = Plus / Minus Query: 289 taccgcccaggagagcttgctgtccgtggtactcgtgtggaggatcactaccgtccagga 348 ||||| ||||||||| ||| || |||||| ||||||||||||| | ||| |||||| || Sbjct: 124193 taccgtccaggagagattgttgctcgtggttctcgtgtggaggagctctatcgtccacga 124134 Query: 349 gagattgcttctcacggngctcgtgtggaggatctntaccgnccaggagagattgcttct 408 ||| ||||| ||||| | ||||| |||||||||| || || |||||||| ||| || Sbjct: 124133 gaggttgctgctcacagtgctcgcatggaggatctgtatcgtccaggagaaattcctatc 124074 Query: 409 cgtggtgctcgtgtggaggatctctaccgtccaggagagattgctgctcgtggtgctcgt 468 ||||||||||||||||||||||| |||||||| ||||| ||| ||||||||| || |||| Sbjct: 124073 cgtggtgctcgtgtggaggatctgtaccgtcctggagaaatttctgctcgtgctgttcgt 124014 Query: 469 atggaggatctctaccgt 486 | |||||||| |||||| Sbjct: 124013 gtagaggatctttaccgt 123996 Score = 129 bits (65), Expect = 1e-26 Identities = 110/125 (88%) Strand = Plus / Minus Query: 400 attgcttctcgtggtgctcgtgtggaggatctctaccgtccaggagagattgctgctcgt 459 |||||||| | ||||||||| |||||||| |||||||||||||||||| |||||||||| Sbjct: 124274 attgcttcacttggtgctcgggtggaggagctctaccgtccaggagagcttgctgctcgc 124215 Query: 460 ggtgctcgtatggaggatctctaccgtccaggagacgttgctgctcgtgatgctcgtatg 519 ||| ||||| ||||||| ||||||||||||||||| ||| |||||||| | ||||| || Sbjct: 124214 ggttctcgtgtggaggagctctaccgtccaggagagattgttgctcgtggttctcgtgtg 124155 Query: 520 gagga 524 ||||| Sbjct: 124154 gagga 124150 Score = 71.9 bits (36), Expect = 2e-09 Identities = 84/100 (84%) Strand = Plus / Minus Query: 459 tggtgctcgtatggaggatctctaccgtccaggagacgttgctgctcgtgatgctcgtat 518 ||||||||| ||||||| ||||||||||||||||| |||||||||| | | ||||| | Sbjct: 124263 tggtgctcgggtggaggagctctaccgtccaggagagcttgctgctcgcggttctcgtgt 124204 Query: 519 ggaggatccctaccgtcaaggagggctagatgctcgtggt 558 |||||| | |||||||| ||||| | | | |||||||||| Sbjct: 124203 ggaggagctctaccgtccaggagagattgttgctcgtggt 124164 Score = 60.0 bits (30), Expect = 8e-06 Identities = 97/120 (80%) Strand = Plus / Minus Query: 270 tgctcgcctggaggatccttaccgcccaggagagcttgctgtccgtggtactcgtgtgga 329 ||||||| ||||||||| || || |||||||| || || |||||||| |||||||||| Sbjct: 124116 tgctcgcatggaggatctgtatcgtccaggagaaattcctatccgtggtgctcgtgtgga 124057 Query: 330 ggatcactaccgtccaggagagattgcttctcacggngctcgtgtggaggatctntaccg 389 ||||| |||||||| ||||| ||| || ||| | | |||||| |||||||| ||||| Sbjct: 124056 ggatctgtaccgtcctggagaaatttctgctcgtgctgttcgtgtagaggatctttaccg 123997
>dbj|AK104849.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-A01, full insert sequence Length = 1063 Score = 167 bits (84), Expect = 5e-38 Identities = 186/221 (84%) Strand = Plus / Plus Query: 315 tggtactcgtgtggaggatcactaccgtccaggagagattgcttctcacggngctcgtgt 374 |||| |||| |||||||| | |||||||||||||||| ||||| ||| ||| ||||||| Sbjct: 361 tggtgctcgggtggaggagctctaccgtccaggagagcttgctgctcgcggttctcgtgt 420 Query: 375 ggaggatctntaccgnccaggagagattgcttctcgtggtgctcgtgtggaggatctcta 434 |||||| || ||||| ||||||||||||| | |||||||| ||||||||||||| ||||| Sbjct: 421 ggaggagctctaccgtccaggagagattgttgctcgtggttctcgtgtggaggagctcta 480 Query: 435 ccgtccaggagagattgctgctcgtggtgctcgtatggaggatctctaccgtccaggaga 494 |||||| ||||| ||||||||| ||||||| ||||||||||| || ||||||||||| Sbjct: 481 tcgtccacgagaggttgctgctcacagtgctcgcatggaggatctgtatcgtccaggaga 540 Query: 495 cgttgctgctcgtgatgctcgtatggaggatccctaccgtc 535 || || |||| ||||||| ||||||||| ||||||| Sbjct: 541 aattcctatccgtggtgctcgtgtggaggatctgtaccgtc 581 Score = 145 bits (73), Expect = 2e-31 Identities = 196/238 (82%) Strand = Plus / Plus Query: 289 taccgcccaggagagcttgctgtccgtggtactcgtgtggaggatcactaccgtccagga 348 ||||| |||||||||||||||| || ||| ||||||||||||| | ||||||||||||| Sbjct: 383 taccgtccaggagagcttgctgctcgcggttctcgtgtggaggagctctaccgtccagga 442 Query: 349 gagattgcttctcacggngctcgtgtggaggatctntaccgnccaggagagattgcttct 408 ||||||| | ||| || ||||||||||||| || || || ||| ||||| ||||| || Sbjct: 443 gagattgttgctcgtggttctcgtgtggaggagctctatcgtccacgagaggttgctgct 502 Query: 409 cgtggtgctcgtgtggaggatctctaccgtccaggagagattgctgctcgtggtgctcgt 468 | ||||||| |||||||||| || ||||||||||| ||| || |||||||||||| Sbjct: 503 cacagtgctcgcatggaggatctgtatcgtccaggagaaattcctatccgtggtgctcgt 562 Query: 469 atggaggatctctaccgtccaggagacgttgctgctcgtgatgctcgtatggaggatc 526 |||||||||| |||||||| ||||| || ||||||||| || |||| | ||||||| Sbjct: 563 gtggaggatctgtaccgtcctggagaaatttctgctcgtgctgttcgtgtagaggatc 620 Score = 137 bits (69), Expect = 4e-29 Identities = 165/198 (83%) Strand = Plus / Plus Query: 289 taccgcccaggagagcttgctgtccgtggtactcgtgtggaggatcactaccgtccagga 348 ||||| ||||||||| ||| || |||||| ||||||||||||| | ||| |||||| || Sbjct: 431 taccgtccaggagagattgttgctcgtggttctcgtgtggaggagctctatcgtccacga 490 Query: 349 gagattgcttctcacggngctcgtgtggaggatctntaccgnccaggagagattgcttct 408 ||| ||||| ||||| | ||||| |||||||||| || || |||||||| ||| || Sbjct: 491 gaggttgctgctcacagtgctcgcatggaggatctgtatcgtccaggagaaattcctatc 550 Query: 409 cgtggtgctcgtgtggaggatctctaccgtccaggagagattgctgctcgtggtgctcgt 468 ||||||||||||||||||||||| |||||||| ||||| ||| ||||||||| || |||| Sbjct: 551 cgtggtgctcgtgtggaggatctgtaccgtcctggagaaatttctgctcgtgctgttcgt 610 Query: 469 atggaggatctctaccgt 486 | |||||||| |||||| Sbjct: 611 gtagaggatctttaccgt 628 Score = 129 bits (65), Expect = 1e-26 Identities = 110/125 (88%) Strand = Plus / Plus Query: 400 attgcttctcgtggtgctcgtgtggaggatctctaccgtccaggagagattgctgctcgt 459 |||||||| | ||||||||| |||||||| |||||||||||||||||| |||||||||| Sbjct: 350 attgcttcacttggtgctcgggtggaggagctctaccgtccaggagagcttgctgctcgc 409 Query: 460 ggtgctcgtatggaggatctctaccgtccaggagacgttgctgctcgtgatgctcgtatg 519 ||| ||||| ||||||| ||||||||||||||||| ||| |||||||| | ||||| || Sbjct: 410 ggttctcgtgtggaggagctctaccgtccaggagagattgttgctcgtggttctcgtgtg 469 Query: 520 gagga 524 ||||| Sbjct: 470 gagga 474 Score = 71.9 bits (36), Expect = 2e-09 Identities = 84/100 (84%) Strand = Plus / Plus Query: 459 tggtgctcgtatggaggatctctaccgtccaggagacgttgctgctcgtgatgctcgtat 518 ||||||||| ||||||| ||||||||||||||||| |||||||||| | | ||||| | Sbjct: 361 tggtgctcgggtggaggagctctaccgtccaggagagcttgctgctcgcggttctcgtgt 420 Query: 519 ggaggatccctaccgtcaaggagggctagatgctcgtggt 558 |||||| | |||||||| ||||| | | | |||||||||| Sbjct: 421 ggaggagctctaccgtccaggagagattgttgctcgtggt 460 Score = 60.0 bits (30), Expect = 8e-06 Identities = 97/120 (80%) Strand = Plus / Plus Query: 270 tgctcgcctggaggatccttaccgcccaggagagcttgctgtccgtggtactcgtgtgga 329 ||||||| ||||||||| || || |||||||| || || |||||||| |||||||||| Sbjct: 508 tgctcgcatggaggatctgtatcgtccaggagaaattcctatccgtggtgctcgtgtgga 567 Query: 330 ggatcactaccgtccaggagagattgcttctcacggngctcgtgtggaggatctntaccg 389 ||||| |||||||| ||||| ||| || ||| | | |||||| |||||||| ||||| Sbjct: 568 ggatctgtaccgtcctggagaaatttctgctcgtgctgttcgtgtagaggatctttaccg 627 Score = 50.1 bits (25), Expect = 0.008 Identities = 69/83 (83%), Gaps = 3/83 (3%) Strand = Plus / Plus Query: 100 taccaccatttggctccttcatctgatgattcttactaccgttctcgagtggatccagtg 159 |||| |||||||||||| |||||||| | | || || ||||||| |||||||||| || Sbjct: 173 taccgccatttggctcc---atctgatgttccatattatcgttctcaagtggatccactg 229 Query: 160 catgagcgcgttgctgccagaac 182 | ||| || |||||||||||||| Sbjct: 230 cctgatcgtgttgctgccagaac 252
>dbj|AK066970.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089B21, full insert sequence Length = 2977 Score = 167 bits (84), Expect = 5e-38 Identities = 186/221 (84%) Strand = Plus / Plus Query: 315 tggtactcgtgtggaggatcactaccgtccaggagagattgcttctcacggngctcgtgt 374 |||| |||| |||||||| | |||||||||||||||| ||||| ||| ||| ||||||| Sbjct: 1871 tggtgctcgggtggaggagctctaccgtccaggagagcttgctgctcgcggttctcgtgt 1930 Query: 375 ggaggatctntaccgnccaggagagattgcttctcgtggtgctcgtgtggaggatctcta 434 |||||| || ||||| ||||||||||||| | |||||||| ||||||||||||| ||||| Sbjct: 1931 ggaggagctctaccgtccaggagagattgttgctcgtggttctcgtgtggaggagctcta 1990 Query: 435 ccgtccaggagagattgctgctcgtggtgctcgtatggaggatctctaccgtccaggaga 494 |||||| ||||| ||||||||| ||||||| ||||||||||| || ||||||||||| Sbjct: 1991 tcgtccacgagaggttgctgctcacagtgctcgcatggaggatctgtatcgtccaggaga 2050 Query: 495 cgttgctgctcgtgatgctcgtatggaggatccctaccgtc 535 || || |||| ||||||| ||||||||| ||||||| Sbjct: 2051 aattcctatccgtggtgctcgtgtggaggatctgtaccgtc 2091 Score = 145 bits (73), Expect = 2e-31 Identities = 196/238 (82%) Strand = Plus / Plus Query: 289 taccgcccaggagagcttgctgtccgtggtactcgtgtggaggatcactaccgtccagga 348 ||||| |||||||||||||||| || ||| ||||||||||||| | ||||||||||||| Sbjct: 1893 taccgtccaggagagcttgctgctcgcggttctcgtgtggaggagctctaccgtccagga 1952 Query: 349 gagattgcttctcacggngctcgtgtggaggatctntaccgnccaggagagattgcttct 408 ||||||| | ||| || ||||||||||||| || || || ||| ||||| ||||| || Sbjct: 1953 gagattgttgctcgtggttctcgtgtggaggagctctatcgtccacgagaggttgctgct 2012 Query: 409 cgtggtgctcgtgtggaggatctctaccgtccaggagagattgctgctcgtggtgctcgt 468 | ||||||| |||||||||| || ||||||||||| ||| || |||||||||||| Sbjct: 2013 cacagtgctcgcatggaggatctgtatcgtccaggagaaattcctatccgtggtgctcgt 2072 Query: 469 atggaggatctctaccgtccaggagacgttgctgctcgtgatgctcgtatggaggatc 526 |||||||||| |||||||| ||||| || ||||||||| || |||| | ||||||| Sbjct: 2073 gtggaggatctgtaccgtcctggagaaatttctgctcgtgctgttcgtgtagaggatc 2130 Score = 137 bits (69), Expect = 4e-29 Identities = 165/198 (83%) Strand = Plus / Plus Query: 289 taccgcccaggagagcttgctgtccgtggtactcgtgtggaggatcactaccgtccagga 348 ||||| ||||||||| ||| || |||||| ||||||||||||| | ||| |||||| || Sbjct: 1941 taccgtccaggagagattgttgctcgtggttctcgtgtggaggagctctatcgtccacga 2000 Query: 349 gagattgcttctcacggngctcgtgtggaggatctntaccgnccaggagagattgcttct 408 ||| ||||| ||||| | ||||| |||||||||| || || |||||||| ||| || Sbjct: 2001 gaggttgctgctcacagtgctcgcatggaggatctgtatcgtccaggagaaattcctatc 2060 Query: 409 cgtggtgctcgtgtggaggatctctaccgtccaggagagattgctgctcgtggtgctcgt 468 ||||||||||||||||||||||| |||||||| ||||| ||| ||||||||| || |||| Sbjct: 2061 cgtggtgctcgtgtggaggatctgtaccgtcctggagaaatttctgctcgtgctgttcgt 2120 Query: 469 atggaggatctctaccgt 486 | |||||||| |||||| Sbjct: 2121 gtagaggatctttaccgt 2138 Score = 129 bits (65), Expect = 1e-26 Identities = 110/125 (88%) Strand = Plus / Plus Query: 400 attgcttctcgtggtgctcgtgtggaggatctctaccgtccaggagagattgctgctcgt 459 |||||||| | ||||||||| |||||||| |||||||||||||||||| |||||||||| Sbjct: 1860 attgcttcacttggtgctcgggtggaggagctctaccgtccaggagagcttgctgctcgc 1919 Query: 460 ggtgctcgtatggaggatctctaccgtccaggagacgttgctgctcgtgatgctcgtatg 519 ||| ||||| ||||||| ||||||||||||||||| ||| |||||||| | ||||| || Sbjct: 1920 ggttctcgtgtggaggagctctaccgtccaggagagattgttgctcgtggttctcgtgtg 1979 Query: 520 gagga 524 ||||| Sbjct: 1980 gagga 1984 Score = 71.9 bits (36), Expect = 2e-09 Identities = 84/100 (84%) Strand = Plus / Plus Query: 459 tggtgctcgtatggaggatctctaccgtccaggagacgttgctgctcgtgatgctcgtat 518 ||||||||| ||||||| ||||||||||||||||| |||||||||| | | ||||| | Sbjct: 1871 tggtgctcgggtggaggagctctaccgtccaggagagcttgctgctcgcggttctcgtgt 1930 Query: 519 ggaggatccctaccgtcaaggagggctagatgctcgtggt 558 |||||| | |||||||| ||||| | | | |||||||||| Sbjct: 1931 ggaggagctctaccgtccaggagagattgttgctcgtggt 1970 Score = 60.0 bits (30), Expect = 8e-06 Identities = 97/120 (80%) Strand = Plus / Plus Query: 270 tgctcgcctggaggatccttaccgcccaggagagcttgctgtccgtggtactcgtgtgga 329 ||||||| ||||||||| || || |||||||| || || |||||||| |||||||||| Sbjct: 2018 tgctcgcatggaggatctgtatcgtccaggagaaattcctatccgtggtgctcgtgtgga 2077 Query: 330 ggatcactaccgtccaggagagattgcttctcacggngctcgtgtggaggatctntaccg 389 ||||| |||||||| ||||| ||| || ||| | | |||||| |||||||| ||||| Sbjct: 2078 ggatctgtaccgtcctggagaaatttctgctcgtgctgttcgtgtagaggatctttaccg 2137 Score = 50.1 bits (25), Expect = 0.008 Identities = 69/83 (83%), Gaps = 3/83 (3%) Strand = Plus / Plus Query: 100 taccaccatttggctccttcatctgatgattcttactaccgttctcgagtggatccagtg 159 |||| |||||||||||| |||||||| | | || || ||||||| |||||||||| || Sbjct: 1683 taccgccatttggctcc---atctgatgttccatattatcgttctcaagtggatccactg 1739 Query: 160 catgagcgcgttgctgccagaac 182 | ||| || |||||||||||||| Sbjct: 1740 cctgatcgtgttgctgccagaac 1762
>dbj|AK073517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040I03, full insert sequence Length = 2636 Score = 159 bits (80), Expect = 1e-35 Identities = 185/221 (83%) Strand = Plus / Plus Query: 315 tggtactcgtgtggaggatcactaccgtccaggagagattgcttctcacggngctcgtgt 374 |||| |||| |||||||| | |||| ||||||||||| ||||| ||| ||| ||||||| Sbjct: 1919 tggtgctcgggtggaggagctctacagtccaggagagcttgctgctcgcggttctcgtgt 1978 Query: 375 ggaggatctntaccgnccaggagagattgcttctcgtggtgctcgtgtggaggatctcta 434 |||||| || ||||| ||||||||||||| | |||||||| ||||||||||||| ||||| Sbjct: 1979 ggaggagctctaccgtccaggagagattgttgctcgtggttctcgtgtggaggagctcta 2038 Query: 435 ccgtccaggagagattgctgctcgtggtgctcgtatggaggatctctaccgtccaggaga 494 |||||| ||||| ||||||||| ||||||| ||||||||||| || ||||||||||| Sbjct: 2039 tcgtccacgagaggttgctgctcacagtgctcgcatggaggatctgtatcgtccaggaga 2098 Query: 495 cgttgctgctcgtgatgctcgtatggaggatccctaccgtc 535 || || |||| ||||||| ||||||||| ||||||| Sbjct: 2099 aattcctatccgtggtgctcgtgtggaggatctgtaccgtc 2139 Score = 141 bits (71), Expect = 3e-30 Identities = 191/232 (82%) Strand = Plus / Plus Query: 295 ccaggagagcttgctgtccgtggtactcgtgtggaggatcactaccgtccaggagagatt 354 |||||||||||||||| || ||| ||||||||||||| | ||||||||||||||||||| Sbjct: 1947 ccaggagagcttgctgctcgcggttctcgtgtggaggagctctaccgtccaggagagatt 2006 Query: 355 gcttctcacggngctcgtgtggaggatctntaccgnccaggagagattgcttctcgtggt 414 | | ||| || ||||||||||||| || || || ||| ||||| ||||| ||| || Sbjct: 2007 gttgctcgtggttctcgtgtggaggagctctatcgtccacgagaggttgctgctcacagt 2066 Query: 415 gctcgtgtggaggatctctaccgtccaggagagattgctgctcgtggtgctcgtatggag 474 ||||| |||||||||| || ||||||||||| ||| || |||||||||||| ||||| Sbjct: 2067 gctcgcatggaggatctgtatcgtccaggagaaattcctatccgtggtgctcgtgtggag 2126 Query: 475 gatctctaccgtccaggagacgttgctgctcgtgatgctcgtatggaggatc 526 ||||| |||||||| ||||| || ||||||||| || |||| | ||||||| Sbjct: 2127 gatctgtaccgtcctggagaaatttctgctcgtgctgttcgtgtagaggatc 2178 Score = 137 bits (69), Expect = 4e-29 Identities = 165/198 (83%) Strand = Plus / Plus Query: 289 taccgcccaggagagcttgctgtccgtggtactcgtgtggaggatcactaccgtccagga 348 ||||| ||||||||| ||| || |||||| ||||||||||||| | ||| |||||| || Sbjct: 1989 taccgtccaggagagattgttgctcgtggttctcgtgtggaggagctctatcgtccacga 2048 Query: 349 gagattgcttctcacggngctcgtgtggaggatctntaccgnccaggagagattgcttct 408 ||| ||||| ||||| | ||||| |||||||||| || || |||||||| ||| || Sbjct: 2049 gaggttgctgctcacagtgctcgcatggaggatctgtatcgtccaggagaaattcctatc 2108 Query: 409 cgtggtgctcgtgtggaggatctctaccgtccaggagagattgctgctcgtggtgctcgt 468 ||||||||||||||||||||||| |||||||| ||||| ||| ||||||||| || |||| Sbjct: 2109 cgtggtgctcgtgtggaggatctgtaccgtcctggagaaatttctgctcgtgctgttcgt 2168 Query: 469 atggaggatctctaccgt 486 | |||||||| |||||| Sbjct: 2169 gtagaggatctttaccgt 2186 Score = 121 bits (61), Expect = 3e-24 Identities = 109/125 (87%) Strand = Plus / Plus Query: 400 attgcttctcgtggtgctcgtgtggaggatctctaccgtccaggagagattgctgctcgt 459 |||||||| | ||||||||| |||||||| |||||| ||||||||||| |||||||||| Sbjct: 1908 attgcttcacttggtgctcgggtggaggagctctacagtccaggagagcttgctgctcgc 1967 Query: 460 ggtgctcgtatggaggatctctaccgtccaggagacgttgctgctcgtgatgctcgtatg 519 ||| ||||| ||||||| ||||||||||||||||| ||| |||||||| | ||||| || Sbjct: 1968 ggttctcgtgtggaggagctctaccgtccaggagagattgttgctcgtggttctcgtgtg 2027 Query: 520 gagga 524 ||||| Sbjct: 2028 gagga 2032 Score = 60.0 bits (30), Expect = 8e-06 Identities = 97/120 (80%) Strand = Plus / Plus Query: 270 tgctcgcctggaggatccttaccgcccaggagagcttgctgtccgtggtactcgtgtgga 329 ||||||| ||||||||| || || |||||||| || || |||||||| |||||||||| Sbjct: 2066 tgctcgcatggaggatctgtatcgtccaggagaaattcctatccgtggtgctcgtgtgga 2125 Query: 330 ggatcactaccgtccaggagagattgcttctcacggngctcgtgtggaggatctntaccg 389 ||||| |||||||| ||||| ||| || ||| | | |||||| |||||||| ||||| Sbjct: 2126 ggatctgtaccgtcctggagaaatttctgctcgtgctgttcgtgtagaggatctttaccg 2185 Score = 50.1 bits (25), Expect = 0.008 Identities = 69/83 (83%), Gaps = 3/83 (3%) Strand = Plus / Plus Query: 100 taccaccatttggctccttcatctgatgattcttactaccgttctcgagtggatccagtg 159 |||| |||||||||||| |||||||| | | || || ||||||| |||||||||| || Sbjct: 1731 taccgccatttggctcc---atctgatgttccatattatcgttctcaagtggatccactg 1787 Query: 160 catgagcgcgttgctgccagaac 182 | ||| || |||||||||||||| Sbjct: 1788 cctgatcgtgttgctgccagaac 1810
>gb|AY108785.1| Zea mays PCO127498 mRNA sequence Length = 802 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 408 tcgtggtgctcgtgtggaggatctctaccgtccaggagagattgctgctcgtg 460 ||||||||||| ||||||||| || ||||||||| | || ||||||| ||||| Sbjct: 422 tcgtggtgctcatgtggaggagctgtaccgtccacgggaaattgctgatcgtg 474
>gb|AC113968.12| Mus musculus chromosome 8, clone RP23-120M17, complete sequence Length = 220191 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 4 attcctcttgccccagatcctcgcca 29 ||||||||||||||||||||| |||| Sbjct: 116874 attcctcttgccccagatccttgcca 116849
>gb|AC170603.2| Mus musculus BAC clone RP23-140J10 from chromosome 8, complete sequence Length = 221596 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 4 attcctcttgccccagatcctcgcca 29 ||||||||||||||||||||| |||| Sbjct: 57966 attcctcttgccccagatccttgcca 57941
>gb|AC163264.3| Rhinolophus ferrumequinum clone VMRC7-385N19, complete sequence Length = 135924 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 5 ttcctcttgccccagatcctcgcca 29 |||||||||||||| |||||||||| Sbjct: 81030 ttcctcttgccccacatcctcgcca 81006
>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold Length = 1756392 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 5 ttcctcttgccccagatcctcgcca 29 |||||||||||||| |||||||||| Sbjct: 239178 ttcctcttgccccacatcctcgcca 239154
>gb|AY626554.1| Stomoxys calcitrans clone ScA3 microsatellite sequence Length = 548 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ggcctcactatatgccttct 66 |||||||||||||||||||| Sbjct: 360 ggcctcactatatgccttct 341
>gb|AC112997.10| Mus musculus chromosome 8, clone RP24-484I6, complete sequence Length = 191413 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 tcctcttgccccagatcctcgcca 29 ||||||||||||||||||| |||| Sbjct: 105264 tcctcttgccccagatccttgcca 105287
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 ctgtaccagagcctcggcat 84 |||||||||||||||||||| Sbjct: 1537907 ctgtaccagagcctcggcat 1537926
>gb|AC182490.3| Pan troglodytes BAC clone CH251-430P12 from chromosome 2, complete sequence Length = 158411 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 tccaggagacgttgctgctc 505 |||||||||||||||||||| Sbjct: 75196 tccaggagacgttgctgctc 75215
>gb|AC120782.25| Pan troglodytes clone rp43-45g12, complete sequence Length = 167170 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 tccaggagacgttgctgctc 505 |||||||||||||||||||| Sbjct: 69282 tccaggagacgttgctgctc 69263
>gb|AC154185.1| Mus musculus BAC clone RP24-67L15 from chromosome 17, complete sequence Length = 167726 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 caggagagattgcttctcac 363 |||||||||||||||||||| Sbjct: 119215 caggagagattgcttctcac 119196
>gb|AY530786.1| Aspergillus niger alpha-1,3-glucan synthase (AgsA) gene, complete cds Length = 10173 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 ccgttctcgagtggatccag 157 |||||||||||||||||||| Sbjct: 7737 ccgttctcgagtggatccag 7756 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,980,627 Number of Sequences: 3902068 Number of extensions: 2980627 Number of successful extensions: 47452 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47328 Number of HSP's gapped (non-prelim): 112 length of query: 558 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 535 effective length of database: 17,143,297,704 effective search space: 9171664271640 effective search space used: 9171664271640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
