ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags17c18 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB181482.1| Bromus inermis BiRP1 mRNA for ribosomal protein, complete cds Length = 1053 Score = 533 bits (269), Expect = e-148 Identities = 367/399 (91%), Gaps = 2/399 (0%) Strand = Plus / Plus Query: 15 accaacaagtattgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactgg 74 ||||||||| ||||||||||||||||||||||| || ||||| || ||||||| ||||| Sbjct: 591 accaacaag-attgttgacttcatcaagtttgatgttggcaatgttgtcatggttactgg 649 Query: 75 tgggcgcaacactgggcgtgtnggtgtgatcaanaacagggagaagcataanggaacctt 134 |||||| |||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| Sbjct: 650 tgggcgtaacactggccgtgttggtgtgatcaagaacagggagaagcataagggaacctt 709 Query: 135 ngagaccatccacgttgaggatgcccagggtcaccagtttgccacccgtctgggcaacgt 194 ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| || Sbjct: 710 cgagaccatccacgttgaggatgctcagggtcaccagttcgccacccgtctaggcaatgt 769 Query: 195 gttcaccattggcaagggcaccaagccttgggtgagcctncccaagggcaagggtatcaa 254 ||||||||| ||||||||||||||||| ||||||| ||| ||||||||||| |||||||| Sbjct: 770 gttcaccatcggcaagggcaccaagccgtgggtgaccctccccaagggcaaaggtatcaa 829 Query: 255 gctcaccatcattgaggagcagaggaagagggatgccgcagctcaggctgctgccaaggc 314 ||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| Sbjct: 830 gctgaccatcattgaggagcagaggaagagggatgccgctgcccaggcagctgccaaggc 889 Query: 315 ctgattctgaggcattgagtcgttttgctatagccagttatctgcaaggatatagaacta 374 ||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct: 890 ctgattctgaggcgttgattcgttttgctatagccagttatctg-aaggatatagaacta 948 Query: 375 tgttcctggaaccatcttttttaagttttgcctgatgtt 413 |||| ||||||||||| ||||||| |||||||||||||| Sbjct: 949 tgtttctggaaccatcgtttttaaattttgcctgatgtt 987
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 323 bits (163), Expect = 3e-85 Identities = 263/297 (88%), Gaps = 1/297 (0%) Strand = Plus / Minus Query: 15 accaacaagtattgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactgg 74 ||||||||| ||||| ||||||||||||||||| || ||||| || ||||||||||||| Sbjct: 317262 accaacaag-attgtcgacttcatcaagtttgatgttggcaatgttgtcatggtgactgg 317204 Query: 75 tgggcgcaacactgggcgtgtnggtgtgatcaanaacagggagaagcataanggaacctt 134 || | ||||| || ||||| ||||||||||| ||||||||||||||||| || | ||| Sbjct: 317203 aggaaggaacacaggccgtgttggtgtgatcaagaacagggagaagcataaaggcagctt 317144 Query: 135 ngagaccatccacgttgaggatgcccagggtcaccagtttgccacccgtctgggcaacgt 194 ||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||| || Sbjct: 317143 cgagaccatccacgttgaggatgccctgggccaccaattcgccacccgtctgggcaatgt 317084 Query: 195 gttcaccattggcaagggcaccaagccttgggtgagcctncccaagggcaagggtatcaa 254 |||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||| Sbjct: 317083 gttcaccattggcaagggcaacaagccttgggtgagcctgcccaagggcaagggcatcaa 317024 Query: 255 gctcaccatcattgaggagcagaggaagagggatgccgcagctcaggctgctgccaa 311 ||||| |||||| |||||||| |||||| ||||||| || || |||||||||||||| Sbjct: 317023 gctcagcatcatcgaggagcaaaggaagcgggatgctgccgcccaggctgctgccaa 316967 Score = 56.0 bits (28), Expect = 9e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 336 gttttgctatagccagttatctgcaaggatatagaactat 375 ||||||||||||| |||| | ||||||||||||||||||| Sbjct: 316935 gttttgctatagcgagttgtttgcaaggatatagaactat 316896
>dbj|AP004851.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1359_D06 Length = 146805 Score = 323 bits (163), Expect = 3e-85 Identities = 263/297 (88%), Gaps = 1/297 (0%) Strand = Plus / Minus Query: 15 accaacaagtattgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactgg 74 ||||||||| ||||| ||||||||||||||||| || ||||| || ||||||||||||| Sbjct: 46046 accaacaag-attgtcgacttcatcaagtttgatgttggcaatgttgtcatggtgactgg 45988 Query: 75 tgggcgcaacactgggcgtgtnggtgtgatcaanaacagggagaagcataanggaacctt 134 || | ||||| || ||||| ||||||||||| ||||||||||||||||| || | ||| Sbjct: 45987 aggaaggaacacaggccgtgttggtgtgatcaagaacagggagaagcataaaggcagctt 45928 Query: 135 ngagaccatccacgttgaggatgcccagggtcaccagtttgccacccgtctgggcaacgt 194 ||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||| || Sbjct: 45927 cgagaccatccacgttgaggatgccctgggccaccaattcgccacccgtctgggcaatgt 45868 Query: 195 gttcaccattggcaagggcaccaagccttgggtgagcctncccaagggcaagggtatcaa 254 |||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||| Sbjct: 45867 gttcaccattggcaagggcaacaagccttgggtgagcctgcccaagggcaagggcatcaa 45808 Query: 255 gctcaccatcattgaggagcagaggaagagggatgccgcagctcaggctgctgccaa 311 ||||| |||||| |||||||| |||||| ||||||| || || |||||||||||||| Sbjct: 45807 gctcagcatcatcgaggagcaaaggaagcgggatgctgccgcccaggctgctgccaa 45751 Score = 56.0 bits (28), Expect = 9e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 336 gttttgctatagccagttatctgcaaggatatagaactat 375 ||||||||||||| |||| | ||||||||||||||||||| Sbjct: 45719 gttttgctatagcgagttgtttgcaaggatatagaactat 45680
>dbj|AK103949.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B09, full insert sequence Length = 1016 Score = 323 bits (163), Expect = 3e-85 Identities = 263/297 (88%), Gaps = 1/297 (0%) Strand = Plus / Plus Query: 15 accaacaagtattgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactgg 74 ||||||||| ||||| ||||||||||||||||| || ||||| || ||||||||||||| Sbjct: 591 accaacaag-attgtcgacttcatcaagtttgatgttggcaatgttgtcatggtgactgg 649 Query: 75 tgggcgcaacactgggcgtgtnggtgtgatcaanaacagggagaagcataanggaacctt 134 || | ||||| || ||||| ||||||||||| ||||||||||||||||| || | ||| Sbjct: 650 aggaaggaacacaggccgtgttggtgtgatcaagaacagggagaagcataaaggcagctt 709 Query: 135 ngagaccatccacgttgaggatgcccagggtcaccagtttgccacccgtctgggcaacgt 194 ||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||| || Sbjct: 710 cgagaccatccacgttgaggatgccctgggccaccaattcgccacccgtctgggcaatgt 769 Query: 195 gttcaccattggcaagggcaccaagccttgggtgagcctncccaagggcaagggtatcaa 254 |||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||| Sbjct: 770 gttcaccattggcaagggcaacaagccttgggtgagcctgcccaagggcaagggcatcaa 829 Query: 255 gctcaccatcattgaggagcagaggaagagggatgccgcagctcaggctgctgccaa 311 ||||| |||||| |||||||| |||||| ||||||| || || |||||||||||||| Sbjct: 830 gctcagcatcatcgaggagcaaaggaagcgggatgctgccgcccaggctgctgccaa 886 Score = 56.0 bits (28), Expect = 9e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 336 gttttgctatagccagttatctgcaaggatatagaactat 375 ||||||||||||| |||| | ||||||||||||||||||| Sbjct: 918 gttttgctatagcgagttgtttgcaaggatatagaactat 957
>dbj|AK102423.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093E13, full insert sequence Length = 1157 Score = 323 bits (163), Expect = 3e-85 Identities = 263/297 (88%), Gaps = 1/297 (0%) Strand = Plus / Plus Query: 15 accaacaagtattgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactgg 74 ||||||||| ||||| ||||||||||||||||| || ||||| || ||||||||||||| Sbjct: 595 accaacaag-attgtcgacttcatcaagtttgatgttggcaatgttgtcatggtgactgg 653 Query: 75 tgggcgcaacactgggcgtgtnggtgtgatcaanaacagggagaagcataanggaacctt 134 || | ||||| || ||||| ||||||||||| ||||||||||||||||| || | ||| Sbjct: 654 aggaaggaacacaggccgtgttggtgtgatcaagaacagggagaagcataaaggcagctt 713 Query: 135 ngagaccatccacgttgaggatgcccagggtcaccagtttgccacccgtctgggcaacgt 194 ||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||| || Sbjct: 714 cgagaccatccacgttgaggatgccctgggccaccaattcgccacccgtctgggcaatgt 773 Query: 195 gttcaccattggcaagggcaccaagccttgggtgagcctncccaagggcaagggtatcaa 254 |||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||| Sbjct: 774 gttcaccattggcaagggcaacaagccttgggtgagcctgcccaagggcaagggcatcaa 833 Query: 255 gctcaccatcattgaggagcagaggaagagggatgccgcagctcaggctgctgccaa 311 ||||| |||||| |||||||| |||||| ||||||| || || |||||||||||||| Sbjct: 834 gctcagcatcatcgaggagcaaaggaagcgggatgctgccgcccaggctgctgccaa 890 Score = 56.0 bits (28), Expect = 9e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 336 gttttgctatagccagttatctgcaaggatatagaactat 375 ||||||||||||| |||| | ||||||||||||||||||| Sbjct: 922 gttttgctatagcgagttgtttgcaaggatatagaactat 961
>dbj|AK061776.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-D06, full insert sequence Length = 1079 Score = 315 bits (159), Expect = 6e-83 Identities = 262/297 (88%), Gaps = 1/297 (0%) Strand = Plus / Plus Query: 15 accaacaagtattgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactgg 74 ||||||||| ||||| ||||||||||||||||| || ||||| || ||||||||||||| Sbjct: 587 accaacaag-attgtcgacttcatcaagtttgatgttggcaatgttgtcatggtgactgg 645 Query: 75 tgggcgcaacactgggcgtgtnggtgtgatcaanaacagggagaagcataanggaacctt 134 || | ||||| || ||||| ||||||||||| ||||||||||||||||| || | ||| Sbjct: 646 aggaaggaacacaggccgtgttggtgtgatcaagaacagggagaagcataaaggcagctt 705 Query: 135 ngagaccatccacgttgaggatgcccagggtcaccagtttgccacccgtctgggcaacgt 194 ||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||| | Sbjct: 706 cgagaccatccacgttgaggatgccctgggccaccaattcgccacccgtctgggcaattt 765 Query: 195 gttcaccattggcaagggcaccaagccttgggtgagcctncccaagggcaagggtatcaa 254 |||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||| Sbjct: 766 gttcaccattggcaagggcaacaagccttgggtgagcctgcccaagggcaagggcatcaa 825 Query: 255 gctcaccatcattgaggagcagaggaagagggatgccgcagctcaggctgctgccaa 311 ||||| |||||| |||||||| |||||| ||||||| || || |||||||||||||| Sbjct: 826 gctcagcatcatcgaggagcaaaggaagcgggatgctgccgcccaggctgctgccaa 882 Score = 56.0 bits (28), Expect = 9e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 336 gttttgctatagccagttatctgcaaggatatagaactat 375 ||||||||||||| |||| | ||||||||||||||||||| Sbjct: 914 gttttgctatagcgagttgtttgcaaggatatagaactat 953
>gb|BT016261.1| Zea mays clone Contig94 mRNA sequence Length = 1116 Score = 262 bits (132), Expect = 8e-67 Identities = 219/250 (87%) Strand = Plus / Plus Query: 31 gacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaacactggg 90 ||||||||||||||||||||||||||||| |||||||||| || ||| | ||||| ||| Sbjct: 616 gacttcatcaagtttgacgtcggcaacgtggtcatggtgaccggcgggaggaacaccggg 675 Query: 91 cgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatccacgtt 150 ||||| ||||||||||| |||||||||||||| || || ||| || ||||||||||| Sbjct: 676 cgtgtaggtgtgatcaagaacagggagaagcacaagggcggcttcgataccatccacgtc 735 Query: 151 gaggatgcccagggtcaccagtttgccacccgtctgggcaacgtgttcaccattggcaag 210 ||||| || ||| |||||||| |||||||| ||||||||||||||||||| |||||| Sbjct: 736 gaggactccatgggccaccagttcgccacccgcatgggcaacgtgttcaccatcggcaag 795 Query: 211 ggcaccaagccttgggtgagcctncccaagggcaagggtatcaagctcaccatcattgag 270 |||| |||||| ||||||||||| ||||||||||||||||||||||||| |||||| ||| Sbjct: 796 ggcaacaagccgtgggtgagcctgcccaagggcaagggtatcaagctcagcatcatcgag 855 Query: 271 gagcagagga 280 |||||||||| Sbjct: 856 gagcagagga 865
>gb|AF015522.1|AF015522 Zea mays ribsomal protein S4 (rps4) mRNA, complete cds Length = 1090 Score = 262 bits (132), Expect = 8e-67 Identities = 219/250 (87%) Strand = Plus / Plus Query: 31 gacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaacactggg 90 ||||||||||||||||||||||||||||| |||||||||| || ||| | ||||| ||| Sbjct: 595 gacttcatcaagtttgacgtcggcaacgtggtcatggtgaccggcgggaggaacaccggg 654 Query: 91 cgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatccacgtt 150 ||||| ||||||||||| |||||||||||||| || || ||| || ||||||||||| Sbjct: 655 cgtgtaggtgtgatcaagaacagggagaagcacaagggcggcttcgataccatccacgtc 714 Query: 151 gaggatgcccagggtcaccagtttgccacccgtctgggcaacgtgttcaccattggcaag 210 ||||| || ||| |||||||| |||||||| ||||||||||||||||||| |||||| Sbjct: 715 gaggactccatgggccaccagttcgccacccgcatgggcaacgtgttcaccatcggcaag 774 Query: 211 ggcaccaagccttgggtgagcctncccaagggcaagggtatcaagctcaccatcattgag 270 |||| |||||| ||||||||||| ||||||||||||||||||||||||| |||||| ||| Sbjct: 775 ggcaacaagccgtgggtgagcctgcccaagggcaagggtatcaagctcagcatcatcgag 834 Query: 271 gagcagagga 280 |||||||||| Sbjct: 835 gagcagagga 844
>gb|AF013487.1|AF013487 Zea mays ribosomal protein S4 type I (rps4) mRNA, complete cds Length = 1013 Score = 260 bits (131), Expect = 3e-66 Identities = 255/297 (85%), Gaps = 1/297 (0%) Strand = Plus / Plus Query: 15 accaacaagtattgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactgg 74 ||||||||| ||||| ||||||||||||||||| || ||||||||| ||||||||||||| Sbjct: 569 accaacaag-attgtggacttcatcaagtttgatgttggcaacgtcgtcatggtgactgg 627 Query: 75 tgggcgcaacactgggcgtgtnggtgtgatcaanaacagggagaagcataanggaacctt 134 || | |||||||| || || ||||| ||||| |||||||||||||| || || | ||| Sbjct: 628 cggaaggaacactggccgcgtgggtgttatcaagaacagggagaagcacaagggcagctt 687 Query: 135 ngagaccatccacgttgaggatgcccagggtcaccagtttgccacccgtctgggcaacgt 194 |||||||| ||||| ||||| ||| ||| |||||||| ||||||||| |||||||||| Sbjct: 688 tgagaccattcacgtggaggactccctgggccaccagttcgccacccgtatgggcaacgt 747 Query: 195 gttcaccattggcaagggcaccaagccttgggtgagcctncccaagggcaagggtatcaa 254 ||||||||| |||||||| | ||||| ||||||||||| |||||||||||||| ||||| Sbjct: 748 gttcaccatcggcaagggtaataagccgtgggtgagcctgcccaagggcaagggaatcaa 807 Query: 255 gctcaccatcattgaggagcagaggaagagggatgccgcagctcaggctgctgccaa 311 ||| | |||||| || ||||| |||||| |||||||||| || |||||||||||||| Sbjct: 808 gctgagcatcatagaagagcaaaggaagcgggatgccgctgcccaggctgctgccaa 864 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 355 tctgcaaggatatagaactatgttc 379 |||||||||||||||||| |||||| Sbjct: 912 tctgcaaggatatagaacaatgttc 936
>gb|AY525608.1| Zea mays ribosomal protein S4 mRNA, complete cds Length = 1037 Score = 248 bits (125), Expect = 1e-62 Identities = 245/287 (85%) Strand = Plus / Plus Query: 25 attgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaac 84 ||||| ||||||||||||||||| || |||||||| ||||||||||||| || | ||| Sbjct: 576 attgtggacttcatcaagtttgatgttggcaacgttgtcatggtgactggcggaaggaac 635 Query: 85 actgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatc 144 ||||| ||||| ||||| ||||| |||||||||||||| || || | | | |||||||| Sbjct: 636 actggccgtgtgggtgttatcaagaacagggagaagcacaagggcagccttgagaccatt 695 Query: 145 cacgttgaggatgcccagggtcaccagtttgccacccgtctgggcaacgtgttcaccatt 204 ||||| ||||| ||| ||| |||||||| ||||||||| ||||||||||||||||||| Sbjct: 696 cacgtggaggactccctgggccaccagttcgccacccgtatgggcaacgtgttcaccatc 755 Query: 205 ggcaagggcaccaagccttgggtgagcctncccaagggcaagggtatcaagctcaccatc 264 |||||||| | ||||| ||||||||||| |||||||||||||| |||||||| | |||| Sbjct: 756 ggcaagggtaataagccgtgggtgagcctgcccaagggcaagggaatcaagctgagcatc 815 Query: 265 attgaggagcagaggaagagggatgccgcagctcaggctgctgccaa 311 || || ||||| |||||| |||||||||| || |||||||||||||| Sbjct: 816 atagaagagcaaaggaagcgggatgccgctgcccaggctgctgccaa 862 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 355 tctgcaaggatatagaactatgttc 379 |||||||||||||||||| |||||| Sbjct: 910 tctgcaaggatatagaacaatgttc 934
>gb|BT017558.1| Zea mays clone EL01N0424H12.c mRNA sequence Length = 1145 Score = 236 bits (119), Expect = 5e-59 Identities = 252/297 (84%), Gaps = 1/297 (0%) Strand = Plus / Minus Query: 15 accaacaagtattgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactgg 74 ||||||||| ||||| ||||||||||||||||| || ||||||||| ||||||||||||| Sbjct: 473 accaacaag-attgtggacttcatcaagtttgatgttggcaacgtcgtcatggtgactgg 415 Query: 75 tgggcgcaacactgggcgtgtnggtgtgatcaanaacagggagaagcataanggaacctt 134 || | ||||||| ||||| ||||| ||||| |||||||||||||| || || | ||| Sbjct: 414 gggaaggaacactgcccgtgtgggtgttatcaagaacagggagaagcacaagggcagctt 355 Query: 135 ngagaccatccacgttgaggatgcccagggtcaccagtttgccacccgtctgggcaacgt 194 ||||| || ||||| ||||| ||| ||| |||||||| ||||||||| |||||||||| Sbjct: 354 tgagactattcacgtggaggactccctgggccaccagttcgccacccgtatgggcaacgt 295 Query: 195 gttcaccattggcaagggcaccaagccttgggtgagcctncccaagggcaagggtatcaa 254 ||||||||| |||||||| | ||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 294 gttcaccatcggcaagggtaataagccgtgggtgagcctgcccaagggtaagggaatcaa 235 Query: 255 gctcaccatcattgaggagcagaggaagagggatgccgcagctcaggctgctgccaa 311 ||| | |||||| || ||||| |||||| ||||||| || || |||||||||||||| Sbjct: 234 gctgagcatcatagaagagcaaaggaagcgggatgctgctgcccaggctgctgccaa 178 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 355 tctgcaaggatatagaactatgttcc 380 |||||||||||||||||| ||||||| Sbjct: 130 tctgcaaggatatagaacaatgttcc 105
>emb|Y15009.1|OSY15009 Oryza sativa mRNA for ribosomal protein S4 Length = 1148 Score = 230 bits (116), Expect = 3e-57 Identities = 193/216 (89%), Gaps = 3/216 (1%) Strand = Plus / Plus Query: 97 ggtgtgatcaanaacagggagaagcataanggaaccttngagaccatccacgttgaggat 156 ||||||||||| |||||||||||||| || || | ||| ||||||||||||||||||||| Sbjct: 652 ggtgtgatcaacaacagggagaagca-aaaggcagcttcgagaccatccacgttgaggat 710 Query: 157 gcccagggtcaccagtttgccacccgtctgggcaacgtgttcaccattggcaagggcacc 216 |||| ||| ||||| || ||||||||||||||||| |||||||||||||||||||||| | Sbjct: 711 gccctgggccaccaattcgccacccgtctgggcaatgtgttcaccattggcaagggcaac 770 Query: 217 aagccttgggtgagcctncccaagggcaagggtatcaagctcaccatcattg-aggagca 275 ||||||||||||||||| |||||||||||||| |||||||||| |||||| | ||||||| Sbjct: 771 aagccttgggtgagcctgcccaagggcaagggcatcaagctcagcatcatcgaaggagca 830 Query: 276 gaggaagagggatgccgcagctcaggctgctgccaa 311 |||||| |||| || || || |||||||||||||| Sbjct: 831 aaggaagcggga-gcggccgcccaggctgctgccaa 865 Score = 42.1 bits (21), Expect = 1.4 Identities = 37/41 (90%), Gaps = 1/41 (2%) Strand = Plus / Plus Query: 336 gttttgctatagccagttatctgcaa-ggatatagaactat 375 ||||||||||||| |||| | ||||| |||||||||||||| Sbjct: 897 gttttgctatagcgagttgtttgcaaaggatatagaactat 937
>ref|NM_193994.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 768 Score = 182 bits (92), Expect = 6e-43 Identities = 243/294 (82%), Gaps = 1/294 (0%) Strand = Plus / Plus Query: 15 accaacaagtattgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactgg 74 ||||||||| ||||||||||||||||||||||| || ||||| ||| | ||||| || || Sbjct: 466 accaacaag-attgttgacttcatcaagtttgatgtgggcaatgtcgttatggtcacagg 524 Query: 75 tgggcgcaacactgggcgtgtnggtgtgatcaanaacagggagaagcataanggaacctt 134 ||| | |||||||| ||||| || || || || |||||||||||||| || || | || Sbjct: 525 agggaggaacactggtcgtgttggagtaattaagaacagggagaagcacaagggcagttt 584 Query: 135 ngagaccatccacgttgaggatgcccagggtcaccagtttgccacccgtctgggcaacgt 194 ||||||||||| || ||||| || ||| || || ||||||||||||||||| || Sbjct: 585 tgagaccatccatgtggaggacgcattgggccatgccttcgccacccgtctgggcaatgt 644 Query: 195 gttcaccattggcaagggcaccaagccttgggtgagcctncccaagggcaagggtatcaa 254 ||||||||| |||||||||| |||||| |||||| || || ||||||||||||||||| Sbjct: 645 gttcaccatcggcaagggcaacaagccatgggtgtctctccctaagggcaagggtatcaa 704 Query: 255 gctcaccatcattgaggagcagaggaagagggatgccgcagctcaggctgctgc 308 ||||| |||||| ||||| ||||||||| | ||||| || |||||||||||||| Sbjct: 705 gctcagcatcatcgaggaacagaggaagcgagatgctgctgctcaggctgctgc 758
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 182 bits (92), Expect = 6e-43 Identities = 243/294 (82%), Gaps = 1/294 (0%) Strand = Plus / Plus Query: 15 accaacaagtattgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactgg 74 ||||||||| ||||||||||||||||||||||| || ||||| ||| | ||||| || || Sbjct: 14497677 accaacaag-attgttgacttcatcaagtttgatgtgggcaatgtcgttatggtcacagg 14497735 Query: 75 tgggcgcaacactgggcgtgtnggtgtgatcaanaacagggagaagcataanggaacctt 134 ||| | |||||||| ||||| || || || || |||||||||||||| || || | || Sbjct: 14497736 agggaggaacactggtcgtgttggagtaattaagaacagggagaagcacaagggcagttt 14497795 Query: 135 ngagaccatccacgttgaggatgcccagggtcaccagtttgccacccgtctgggcaacgt 194 ||||||||||| || ||||| || ||| || || ||||||||||||||||| || Sbjct: 14497796 tgagaccatccatgtggaggacgcattgggccatgccttcgccacccgtctgggcaatgt 14497855 Query: 195 gttcaccattggcaagggcaccaagccttgggtgagcctncccaagggcaagggtatcaa 254 ||||||||| |||||||||| |||||| |||||| || || ||||||||||||||||| Sbjct: 14497856 gttcaccatcggcaagggcaacaagccatgggtgtctctccctaagggcaagggtatcaa 14497915 Query: 255 gctcaccatcattgaggagcagaggaagagggatgccgcagctcaggctgctgc 308 ||||| |||||| ||||| ||||||||| | ||||| || |||||||||||||| Sbjct: 14497916 gctcagcatcatcgaggaacagaggaagcgagatgctgctgctcaggctgctgc 14497969
>dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0514H03 Length = 167230 Score = 182 bits (92), Expect = 6e-43 Identities = 243/294 (82%), Gaps = 1/294 (0%) Strand = Plus / Plus Query: 15 accaacaagtattgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactgg 74 ||||||||| ||||||||||||||||||||||| || ||||| ||| | ||||| || || Sbjct: 56990 accaacaag-attgttgacttcatcaagtttgatgtgggcaatgtcgttatggtcacagg 57048 Query: 75 tgggcgcaacactgggcgtgtnggtgtgatcaanaacagggagaagcataanggaacctt 134 ||| | |||||||| ||||| || || || || |||||||||||||| || || | || Sbjct: 57049 agggaggaacactggtcgtgttggagtaattaagaacagggagaagcacaagggcagttt 57108 Query: 135 ngagaccatccacgttgaggatgcccagggtcaccagtttgccacccgtctgggcaacgt 194 ||||||||||| || ||||| || ||| || || ||||||||||||||||| || Sbjct: 57109 tgagaccatccatgtggaggacgcattgggccatgccttcgccacccgtctgggcaatgt 57168 Query: 195 gttcaccattggcaagggcaccaagccttgggtgagcctncccaagggcaagggtatcaa 254 ||||||||| |||||||||| |||||| |||||| || || ||||||||||||||||| Sbjct: 57169 gttcaccatcggcaagggcaacaagccatgggtgtctctccctaagggcaagggtatcaa 57228 Query: 255 gctcaccatcattgaggagcagaggaagagggatgccgcagctcaggctgctgc 308 ||||| |||||| ||||| ||||||||| | ||||| || |||||||||||||| Sbjct: 57229 gctcagcatcatcgaggaacagaggaagcgagatgctgctgctcaggctgctgc 57282
>dbj|AK061826.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-C06, full insert sequence Length = 1035 Score = 182 bits (92), Expect = 6e-43 Identities = 243/294 (82%), Gaps = 1/294 (0%) Strand = Plus / Plus Query: 15 accaacaagtattgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactgg 74 ||||||||| ||||||||||||||||||||||| || ||||| ||| | ||||| || || Sbjct: 583 accaacaag-attgttgacttcatcaagtttgatgtgggcaatgtcgttatggtcacagg 641 Query: 75 tgggcgcaacactgggcgtgtnggtgtgatcaanaacagggagaagcataanggaacctt 134 ||| | |||||||| ||||| || || || || |||||||||||||| || || | || Sbjct: 642 agggaggaacactggtcgtgttggagtaattaagaacagggagaagcacaagggcagttt 701 Query: 135 ngagaccatccacgttgaggatgcccagggtcaccagtttgccacccgtctgggcaacgt 194 ||||||||||| || ||||| || ||| || || ||||||||||||||||| || Sbjct: 702 tgagaccatccatgtggaggacgcattgggccatgccttcgccacccgtctgggcaatgt 761 Query: 195 gttcaccattggcaagggcaccaagccttgggtgagcctncccaagggcaagggtatcaa 254 ||||||||| |||||||||| |||||| |||||| || || ||||||||||||||||| Sbjct: 762 gttcaccatcggcaagggcaacaagccatgggtgtctctccctaagggcaagggtatcaa 821 Query: 255 gctcaccatcattgaggagcagaggaagagggatgccgcagctcaggctgctgc 308 ||||| |||||| ||||| ||||||||| | ||||| || |||||||||||||| Sbjct: 822 gctcagcatcatcgaggaacagaggaagcgagatgctgctgctcaggctgctgc 875
>ref|XM_475130.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 738 Score = 147 bits (74), Expect = 3e-32 Identities = 206/252 (81%) Strand = Plus / Plus Query: 31 gacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaacactggg 90 ||||||||||||||||| || || ||| || | |||||||| |||||| | ||||| ||| Sbjct: 457 gacttcatcaagtttgatgttggaaacatcgtgatggtgaccggtgggaggaacacgggg 516 Query: 91 cgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatccacgtt 150 || || || |||||||| | |||||||||||| || || | ||| ||||||||||| || Sbjct: 517 cgcgtcggggtgatcaagagcagggagaagcacaagggcagctttgagaccatccatgtc 576 Query: 151 gaggatgcccagggtcaccagtttgccacccgtctgggcaacgtgttcaccattggcaag 210 |||||||||| || |||||||| || || || |||||||||| |||||||| |||||| Sbjct: 577 gaggatgccctcggccaccagttcgcgactcgcatgggcaacgtcttcaccatcggcaag 636 Query: 211 ggcaccaagccttgggtgagcctncccaagggcaagggtatcaagctcaccatcattgag 270 | | ||||| ||||| || |||||||||||||| |||||||||| |||||||||| Sbjct: 637 gagaggaagccgtgggtatctctccccaagggcaagggcatcaagctcagcatcattgag 696 Query: 271 gagcagaggaag 282 ||| ||||||| Sbjct: 697 gaggcgaggaag 708
>gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1393_A07, complete sequence Length = 159932 Score = 147 bits (74), Expect = 3e-32 Identities = 206/252 (81%) Strand = Plus / Plus Query: 31 gacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaacactggg 90 ||||||||||||||||| || || ||| || | |||||||| |||||| | ||||| ||| Sbjct: 80782 gacttcatcaagtttgatgttggaaacatcgtgatggtgaccggtgggaggaacacgggg 80841 Query: 91 cgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatccacgtt 150 || || || |||||||| | |||||||||||| || || | ||| ||||||||||| || Sbjct: 80842 cgcgtcggggtgatcaagagcagggagaagcacaagggcagctttgagaccatccatgtc 80901 Query: 151 gaggatgcccagggtcaccagtttgccacccgtctgggcaacgtgttcaccattggcaag 210 |||||||||| || |||||||| || || || |||||||||| |||||||| |||||| Sbjct: 80902 gaggatgccctcggccaccagttcgcgactcgcatgggcaacgtcttcaccatcggcaag 80961 Query: 211 ggcaccaagccttgggtgagcctncccaagggcaagggtatcaagctcaccatcattgag 270 | | ||||| ||||| || |||||||||||||| |||||||||| |||||||||| Sbjct: 80962 gagaggaagccgtgggtatctctccccaagggcaagggcatcaagctcagcatcattgag 81021 Query: 271 gagcagaggaag 282 ||| ||||||| Sbjct: 81022 gaggcgaggaag 81033
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 147 bits (74), Expect = 3e-32 Identities = 206/252 (81%) Strand = Plus / Plus Query: 31 gacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaacactggg 90 ||||||||||||||||| || || ||| || | |||||||| |||||| | ||||| ||| Sbjct: 17550977 gacttcatcaagtttgatgttggaaacatcgtgatggtgaccggtgggaggaacacgggg 17551036 Query: 91 cgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatccacgtt 150 || || || |||||||| | |||||||||||| || || | ||| ||||||||||| || Sbjct: 17551037 cgcgtcggggtgatcaagagcagggagaagcacaagggcagctttgagaccatccatgtc 17551096 Query: 151 gaggatgcccagggtcaccagtttgccacccgtctgggcaacgtgttcaccattggcaag 210 |||||||||| || |||||||| || || || |||||||||| |||||||| |||||| Sbjct: 17551097 gaggatgccctcggccaccagttcgcgactcgcatgggcaacgtcttcaccatcggcaag 17551156 Query: 211 ggcaccaagccttgggtgagcctncccaagggcaagggtatcaagctcaccatcattgag 270 | | ||||| ||||| || |||||||||||||| |||||||||| |||||||||| Sbjct: 17551157 gagaggaagccgtgggtatctctccccaagggcaagggcatcaagctcagcatcattgag 17551216 Query: 271 gagcagaggaag 282 ||| ||||||| Sbjct: 17551217 gaggcgaggaag 17551228
>dbj|AK071862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123J20, full insert sequence Length = 1162 Score = 147 bits (74), Expect = 3e-32 Identities = 206/252 (81%) Strand = Plus / Plus Query: 31 gacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaacactggg 90 ||||||||||||||||| || || ||| || | |||||||| |||||| | ||||| ||| Sbjct: 609 gacttcatcaagtttgatgttggaaacatcgtgatggtgaccggtgggaggaacacgggg 668 Query: 91 cgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatccacgtt 150 || || || |||||||| | |||||||||||| || || | ||| ||||||||||| || Sbjct: 669 cgcgtcggggtgatcaagagcagggagaagcacaagggcagctttgagaccatccatgtc 728 Query: 151 gaggatgcccagggtcaccagtttgccacccgtctgggcaacgtgttcaccattggcaag 210 |||||||||| || |||||||| || || || |||||||||| |||||||| |||||| Sbjct: 729 gaggatgccctcggccaccagttcgcgactcgcatgggcaacgtcttcaccatcggcaag 788 Query: 211 ggcaccaagccttgggtgagcctncccaagggcaagggtatcaagctcaccatcattgag 270 | | ||||| ||||| || |||||||||||||| |||||||||| |||||||||| Sbjct: 789 gagaggaagccgtgggtatctctccccaagggcaagggcatcaagctcagcatcattgag 848 Query: 271 gagcagaggaag 282 ||| ||||||| Sbjct: 849 gaggcgaggaag 860
>gb|AF071891.1|AF071891 Prunus armeniaca 40S ribosomal protein S4 (RPS4) mRNA, complete cds Length = 1086 Score = 145 bits (73), Expect = 1e-31 Identities = 196/239 (82%) Strand = Plus / Plus Query: 31 gacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaacactggg 90 |||||||| |||||||| || || || || |||||||||||||||| | |||| || Sbjct: 545 gacttcattaagtttgatgttggaaatgttgtcatggtgactggtggaagaaacagaggt 604 Query: 91 cgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatccacgtt 150 ||||| || || || || ||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 605 cgtgttggagtcattaagaacagggagaagcataagggaagctttgagaccatccacgtt 664 Query: 151 gaggatgcccagggtcaccagtttgccacccgtctgggcaacgtgttcaccattggcaag 210 |||||||| |||||| ||||||| || || || || || |||||||||||||||||| Sbjct: 665 caggatgccactggtcacgagtttgctactcggcttggtaatgtgttcaccattggcaag 724 Query: 211 ggcaccaagccttgggtgagcctncccaagggcaagggtatcaagctcaccatcattga 269 || || || ||||||||| || |||||||| || ||||||||||| |||||| |||| Sbjct: 725 ggtacaaaaccttgggtgtctcttcccaaggggaaaggtatcaagctaaccatccttga 783
>gb|AC126779.19| Medicago truncatula clone mth2-34m14, complete sequence Length = 128856 Score = 115 bits (58), Expect = 1e-22 Identities = 173/213 (81%) Strand = Plus / Plus Query: 88 gggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatccac 147 |||||||| || |||||||| ||||| || |||||||| |||||||| ||||| |||||| Sbjct: 83513 gggcgtgttggagtgatcaagaacagagaaaagcataagggaacctttgagacaatccac 83572 Query: 148 gttgaggatgcccagggtcaccagtttgccacccgtctgggcaacgtgttcaccattggc 207 ||| |||||||| ||||| ||||||| || ||||||| ||| |||||||| |||||| Sbjct: 83573 gttcaggatgccactggtcatgagtttgcaactcgtctggtcaatgtgttcactattggc 83632 Query: 208 aagggcaccaagccttgggtgagcctncccaagggcaagggtatcaagctcaccatcatt 267 ||||| || ||||| ||||| || |||||||| |||||||| || | || ||||| Sbjct: 83633 aaggggacaaagccatgggtatctcttcccaagggtaagggtattaaattaactgtcatt 83692 Query: 268 gaggagcagaggaagagggatgccgcagctcag 300 ||||| |||||||||| ||| ||||||||| Sbjct: 83693 gaggaagctaggaagagggctgctgcagctcag 83725
>dbj|AB232685.1| Panax ginseng mRNA for ribosomal protein S4, complete cds Length = 1105 Score = 97.6 bits (49), Expect = 3e-17 Identities = 170/212 (80%) Strand = Plus / Plus Query: 62 tcatggtgactggtgggcgcaacactgggcgtgtnggtgtgatcaanaacagggagaagc 121 ||||||||||||| ||| | || |||||||| || || || ||||| ||||||||||| | Sbjct: 629 tcatggtgactggggggaggaatactgggcgagttggagttatcaagaacagggagaaac 688 Query: 122 ataanggaaccttngagaccatccacgttgaggatgcccagggtcaccagtttgccaccc 181 |||| || | ||| ||||| | ||| || ||||| ||| |||||| ||||||| || | Sbjct: 689 ataaggggagcttcgagactgttcacattcaggattcccttggtcacgagtttgctactc 748 Query: 182 gtctgggcaacgtgttcaccattggcaagggcaccaagccttgggtgagcctncccaagg 241 |||| ||||| || || ||||| || || || || ||||| |||||| || ||||||| Sbjct: 749 gtctaggcaatgtttttaccatcggaaaaggtacaaagccatgggtgtctcttcccaagg 808 Query: 242 gcaagggtatcaagctcaccatcattgaggag 273 ||||||||||||| | ||||||||||||||| Sbjct: 809 gcaagggtatcaaattaaccatcattgaggag 840
>emb|BX832253.1|CNS09ZUO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH61ZB04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 945 Score = 87.7 bits (44), Expect = 3e-14 Identities = 102/123 (82%) Strand = Plus / Plus Query: 25 attgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaac 84 |||||||| ||||||||||||||||| || ||||| | ||||||||||| || | ||| Sbjct: 503 attgttgagttcatcaagtttgacgtgggtaacgttgtgatggtgactggaggcagaaac 562 Query: 85 actgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatc 144 | |||||||| |||||||| || ||| | || |||||||| |||||||| ||||| ||| Sbjct: 563 agagggcgtgtgggtgtgattaagaaccgtgaaaagcataagggaacctttgagacaatc 622 Query: 145 cac 147 ||| Sbjct: 623 cac 625
>ref|NM_001036769.1| Arabidopsis thaliana structural constituent of ribosome AT5G07090 transcript variant AT5G07090.2 mRNA, complete cds Length = 1174 Score = 79.8 bits (40), Expect = 6e-12 Identities = 101/123 (82%) Strand = Plus / Plus Query: 25 attgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaac 84 |||||||| ||||||||||||||||| || ||||| | ||||||||||| || | ||| Sbjct: 617 attgttgagttcatcaagtttgacgtgggtaacgttgtgatggtgactggaggcagaaac 676 Query: 85 actgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatc 144 | |||||||| |||||||| || ||| | || |||||||| |||| ||| ||||| ||| Sbjct: 677 agagggcgtgtgggtgtgattaagaaccgtgaaaagcataagggaagctttgagacaatc 736 Query: 145 cac 147 ||| Sbjct: 737 cac 739 Score = 46.1 bits (23), Expect = 0.090 Identities = 32/35 (91%) Strand = Plus / Plus Query: 238 aagggcaagggtatcaagctcaccatcattgagga 272 |||||||| ||||| ||||| |||||||||||||| Sbjct: 830 aagggcaaaggtattaagctgaccatcattgagga 864
>ref|NM_120791.2| Arabidopsis thaliana structural constituent of ribosome AT5G07090 transcript variant AT5G07090.1 mRNA, complete cds Length = 1088 Score = 79.8 bits (40), Expect = 6e-12 Identities = 101/123 (82%) Strand = Plus / Plus Query: 25 attgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaac 84 |||||||| ||||||||||||||||| || ||||| | ||||||||||| || | ||| Sbjct: 532 attgttgagttcatcaagtttgacgtgggtaacgttgtgatggtgactggaggcagaaac 591 Query: 85 actgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatc 144 | |||||||| |||||||| || ||| | || |||||||| |||| ||| ||||| ||| Sbjct: 592 agagggcgtgtgggtgtgattaagaaccgtgaaaagcataagggaagctttgagacaatc 651 Query: 145 cac 147 ||| Sbjct: 652 cac 654 Score = 46.1 bits (23), Expect = 0.090 Identities = 32/35 (91%) Strand = Plus / Plus Query: 238 aagggcaagggtatcaagctcaccatcattgagga 272 |||||||| ||||| ||||| |||||||||||||| Sbjct: 745 aagggcaaaggtattaagctgaccatcattgagga 779
>gb|AY079417.1| Arabidopsis thaliana putative 40S ribosomal protein S4 (At5g07090) mRNA, complete cds Length = 820 Score = 79.8 bits (40), Expect = 6e-12 Identities = 101/123 (82%) Strand = Plus / Plus Query: 25 attgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaac 84 |||||||| ||||||||||||||||| || ||||| | ||||||||||| || | ||| Sbjct: 505 attgttgagttcatcaagtttgacgtgggtaacgttgtgatggtgactggaggcagaaac 564 Query: 85 actgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatc 144 | |||||||| |||||||| || ||| | || |||||||| |||| ||| ||||| ||| Sbjct: 565 agagggcgtgtgggtgtgattaagaaccgtgaaaagcataagggaagctttgagacaatc 624 Query: 145 cac 147 ||| Sbjct: 625 cac 627 Score = 46.1 bits (23), Expect = 0.090 Identities = 32/35 (91%) Strand = Plus / Plus Query: 238 aagggcaagggtatcaagctcaccatcattgagga 272 |||||||| ||||| ||||| |||||||||||||| Sbjct: 718 aagggcaaaggtattaagctgaccatcattgagga 752
>gb|AY050933.1| Arabidopsis thaliana putative 40S ribosomal protein S4 (At5g07090) mRNA, complete cds Length = 1059 Score = 79.8 bits (40), Expect = 6e-12 Identities = 101/123 (82%) Strand = Plus / Plus Query: 25 attgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaac 84 |||||||| ||||||||||||||||| || ||||| | ||||||||||| || | ||| Sbjct: 529 attgttgagttcatcaagtttgacgtgggtaacgttgtgatggtgactggaggcagaaac 588 Query: 85 actgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatc 144 | |||||||| |||||||| || ||| | || |||||||| |||| ||| ||||| ||| Sbjct: 589 agagggcgtgtgggtgtgattaagaaccgtgaaaagcataagggaagctttgagacaatc 648 Query: 145 cac 147 ||| Sbjct: 649 cac 651 Score = 46.1 bits (23), Expect = 0.090 Identities = 32/35 (91%) Strand = Plus / Plus Query: 238 aagggcaagggtatcaagctcaccatcattgagga 272 |||||||| ||||| ||||| |||||||||||||| Sbjct: 742 aagggcaaaggtattaagctgaccatcattgagga 776
>emb|AL163652.1|ATT28J14 Arabidopsis thaliana DNA chromosome 5, BAC clone T28J14 (ESSA project) Length = 104607 Score = 79.8 bits (40), Expect = 6e-12 Identities = 101/123 (82%) Strand = Plus / Plus Query: 25 attgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaac 84 |||||||| ||||||||||||||||| || ||||| | ||||||||||| || | ||| Sbjct: 7774 attgttgagttcatcaagtttgacgtgggtaacgttgtgatggtgactggaggcagaaac 7833 Query: 85 actgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatc 144 | |||||||| |||||||| || ||| | || |||||||| |||| ||| ||||| ||| Sbjct: 7834 agagggcgtgtgggtgtgattaagaaccgtgaaaagcataagggaagctttgagacaatc 7893 Query: 145 cac 147 ||| Sbjct: 7894 cac 7896 Score = 46.1 bits (23), Expect = 0.090 Identities = 32/35 (91%) Strand = Plus / Plus Query: 238 aagggcaagggtatcaagctcaccatcattgagga 272 |||||||| ||||| ||||| |||||||||||||| Sbjct: 7987 aagggcaaaggtattaagctgaccatcattgagga 8021
>gb|AY093715.1| Arabidopsis thaliana AT5g07090/T28J14_30 mRNA, complete cds Length = 789 Score = 79.8 bits (40), Expect = 6e-12 Identities = 101/123 (82%) Strand = Plus / Plus Query: 25 attgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaac 84 |||||||| ||||||||||||||||| || ||||| | ||||||||||| || | ||| Sbjct: 505 attgttgagttcatcaagtttgacgtgggtaacgttgtgatggtgactggaggcagaaac 564 Query: 85 actgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatc 144 | |||||||| |||||||| || ||| | || |||||||| |||| ||| ||||| ||| Sbjct: 565 agagggcgtgtgggtgtgattaagaaccgtgaaaagcataagggaagctttgagacaatc 624 Query: 145 cac 147 ||| Sbjct: 625 cac 627 Score = 46.1 bits (23), Expect = 0.090 Identities = 32/35 (91%) Strand = Plus / Plus Query: 238 aagggcaagggtatcaagctcaccatcattgagga 272 |||||||| ||||| ||||| |||||||||||||| Sbjct: 718 aagggcaaaggtattaagctgaccatcattgagga 752
>gb|AY070769.1| Arabidopsis thaliana AT5g07090/T28J14_30 mRNA, complete cds Length = 1008 Score = 79.8 bits (40), Expect = 6e-12 Identities = 101/123 (82%) Strand = Plus / Plus Query: 25 attgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaac 84 |||||||| ||||||||||||||||| || ||||| | ||||||||||| || | ||| Sbjct: 529 attgttgagttcatcaagtttgacgtgggtaacgttgtgatggtgactggaggcagaaac 588 Query: 85 actgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatc 144 | |||||||| |||||||| || ||| | || |||||||| |||| ||| ||||| ||| Sbjct: 589 agagggcgtgtgggtgtgattaagaaccgtgaaaagcataagggaagctttgagacaatc 648 Query: 145 cac 147 ||| Sbjct: 649 cac 651 Score = 46.1 bits (23), Expect = 0.090 Identities = 32/35 (91%) Strand = Plus / Plus Query: 238 aagggcaagggtatcaagctcaccatcattgagga 272 |||||||| ||||| ||||| |||||||||||||| Sbjct: 742 aagggcaaaggtattaagctgaccatcattgagga 776
>emb|BX824247.1|CNS0A6X1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH32ZH05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1168 Score = 79.8 bits (40), Expect = 6e-12 Identities = 101/123 (82%) Strand = Plus / Minus Query: 25 attgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaac 84 |||||||| ||||||||||||||||| || ||||| | ||||||||||| || | ||| Sbjct: 476 attgttgagttcatcaagtttgacgtgggtaacgttgtgatggtgactggaggcagaaac 417 Query: 85 actgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatc 144 | |||||||| |||||||| || ||| | || |||||||| |||| ||| ||||| ||| Sbjct: 416 agagggcgtgtgggtgtgattaagaaccgtgaaaagcataagggaagctttgagacaatc 357 Query: 145 cac 147 ||| Sbjct: 356 cac 354 Score = 46.1 bits (23), Expect = 0.090 Identities = 32/35 (91%) Strand = Plus / Minus Query: 238 aagggcaagggtatcaagctcaccatcattgagga 272 |||||||| ||||| ||||| |||||||||||||| Sbjct: 263 aagggcaaaggtattaagctgaccatcattgagga 229
>emb|BX832664.1|CNS09ZT5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH87ZG07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 976 Score = 79.8 bits (40), Expect = 6e-12 Identities = 101/123 (82%) Strand = Plus / Plus Query: 25 attgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaac 84 |||||||| ||||||||||||||||| || ||||| | ||||||||||| || | ||| Sbjct: 499 attgttgagttcatcaagtttgacgtgggtaacgttgtgatggtgactggaggcagaaac 558 Query: 85 actgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatc 144 | |||||||| |||||||| || ||| | || |||||||| |||| ||| ||||| ||| Sbjct: 559 agagggcgtgtgggtgtgattaagaaccgtgaaaagcataagggaagctttgagacaatc 618 Query: 145 cac 147 ||| Sbjct: 619 cac 621 Score = 46.1 bits (23), Expect = 0.090 Identities = 32/35 (91%) Strand = Plus / Plus Query: 238 aagggcaagggtatcaagctcaccatcattgagga 272 |||||||| ||||| ||||| |||||||||||||| Sbjct: 712 aagggcaaaggtattaagctgaccatcattgagga 746
>emb|BX832452.1|CNS09ZTE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH74ZD04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 942 Score = 79.8 bits (40), Expect = 6e-12 Identities = 101/123 (82%) Strand = Plus / Plus Query: 25 attgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaac 84 |||||||| ||||||||||||||||| || ||||| | ||||||||||| || | ||| Sbjct: 503 attgttgagttcatcaagtttgacgtgggtaacgttgtgatggtgactggaggcagaaac 562 Query: 85 actgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatc 144 | |||||||| |||||||| || ||| | || |||||||| |||| ||| ||||| ||| Sbjct: 563 agagggcgtgtgggtgtgattaagaaccgtgaaaagcataagggaagctttgagacaatc 622 Query: 145 cac 147 ||| Sbjct: 623 cac 625 Score = 46.1 bits (23), Expect = 0.090 Identities = 32/35 (91%) Strand = Plus / Plus Query: 238 aagggcaagggtatcaagctcaccatcattgagga 272 |||||||| ||||| ||||| |||||||||||||| Sbjct: 716 aagggcaaaggtattaagctgaccatcattgagga 750
>emb|BX832256.1|CNS09ZVR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH61ZC05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 952 Score = 79.8 bits (40), Expect = 6e-12 Identities = 101/123 (82%) Strand = Plus / Plus Query: 25 attgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaac 84 |||||||| ||||||||||||||||| || ||||| | ||||||||||| || | ||| Sbjct: 492 attgttgagttcatcaagtttgacgtgggtaacgttgtgatggtgactggaggcagaaac 551 Query: 85 actgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatc 144 | |||||||| |||||||| || ||| | || |||||||| |||| ||| ||||| ||| Sbjct: 552 agagggcgtgtgggtgtgattaagaaccgtgaaaagcataagggaagctttgagacaatc 611 Query: 145 cac 147 ||| Sbjct: 612 cac 614 Score = 46.1 bits (23), Expect = 0.090 Identities = 32/35 (91%) Strand = Plus / Plus Query: 238 aagggcaagggtatcaagctcaccatcattgagga 272 |||||||| ||||| ||||| |||||||||||||| Sbjct: 705 aagggcaaaggtattaagctgaccatcattgagga 739
>gb|AY085205.1| Arabidopsis thaliana clone 13813 mRNA, complete sequence Length = 1011 Score = 79.8 bits (40), Expect = 6e-12 Identities = 101/123 (82%) Strand = Plus / Plus Query: 25 attgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaac 84 |||||||| ||||||||||||||||| || ||||| | ||||||||||| || | ||| Sbjct: 532 attgttgagttcatcaagtttgacgtgggtaacgttgtgatggtgactggaggcagaaac 591 Query: 85 actgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatc 144 | |||||||| |||||||| || ||| | || |||||||| |||| ||| ||||| ||| Sbjct: 592 agagggcgtgtgggtgtgattaagaaccgtgaaaagcataagggaagctttgagacaatc 651 Query: 145 cac 147 ||| Sbjct: 652 cac 654 Score = 46.1 bits (23), Expect = 0.090 Identities = 32/35 (91%) Strand = Plus / Plus Query: 238 aagggcaagggtatcaagctcaccatcattgagga 272 |||||||| ||||| ||||| |||||||||||||| Sbjct: 745 aagggcaaaggtattaagctgaccatcattgagga 779
>dbj|AB010697.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOJ9 Length = 86380 Score = 79.8 bits (40), Expect = 6e-12 Identities = 101/123 (82%) Strand = Plus / Plus Query: 25 attgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaac 84 |||||||| ||||||||||||||||| || ||||| | ||||||||||| || | ||| Sbjct: 82497 attgttgagttcatcaagtttgacgtgggtaacgttgtgatggtgactggaggcagaaac 82556 Query: 85 actgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatc 144 | |||||||| |||||||| || ||| | || |||||||| |||| ||| ||||| ||| Sbjct: 82557 agagggcgtgtgggtgtgattaagaaccgtgaaaagcataagggaagctttgagacaatc 82616 Query: 145 cac 147 ||| Sbjct: 82617 cac 82619 Score = 46.1 bits (23), Expect = 0.090 Identities = 32/35 (91%) Strand = Plus / Plus Query: 238 aagggcaagggtatcaagctcaccatcattgagga 272 |||||||| ||||| ||||| |||||||||||||| Sbjct: 82710 aagggcaaaggtattaagctgaccatcattgagga 82744
>emb|X76651.1|STRPS4 S.tuberosum (Desiree) mRNA for ribosomal protein S4 Length = 966 Score = 79.8 bits (40), Expect = 6e-12 Identities = 161/203 (79%) Strand = Plus / Plus Query: 25 attgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaac 84 |||||||| ||||||||||||||||| || || || | ||||||||||| || | ||| Sbjct: 554 attgttgatttcatcaagtttgacgttgggaatgttgtgatggtgactggaggtagaaac 613 Query: 85 actgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatc 144 | || || || ||||| || || ||||||||||||||||| || | ||| |||||| || Sbjct: 614 aggggacgagttggtgttattaagaacagggagaagcataagggtagctttgagaccctc 673 Query: 145 cacgttgaggatgcccagggtcaccagtttgccacccgtctgggcaacgtgttcaccatt 204 ||| || ||||| | |||||||| | ||||| || ||| |||| || |||||||| || Sbjct: 674 cacattcaggattcacagggtcatgaatttgctacacgtttgggaaatgtgttcactctt 733 Query: 205 ggcaagggcaccaagccttgggt 227 || ||||| || ||||| ||||| Sbjct: 734 ggtaagggtactaagccgtgggt 756
>gb|DQ268839.1| Solanum tuberosum clone 130D11 40S ribosomal protein S4-like protein mRNA, complete cds Length = 1052 Score = 71.9 bits (36), Expect = 2e-09 Identities = 160/203 (78%) Strand = Plus / Plus Query: 25 attgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaac 84 |||||||| ||||||||||||||||| || || || | ||||||||||| || | ||| Sbjct: 537 attgttgatttcatcaagtttgacgttgggaatgttgtgatggtgactggaggtagaaac 596 Query: 85 actgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatc 144 | || || || ||||| || || ||||||||||||||||| || | ||| |||||| || Sbjct: 597 aggggacgagttggtgttattaagaacagggagaagcataagggtagctttgagaccctc 656 Query: 145 cacgttgaggatgcccagggtcaccagtttgccacccgtctgggcaacgtgttcaccatt 204 ||| || | ||| | |||||||| | ||||| || ||| |||| || |||||||| || Sbjct: 657 cacattcaagattcacagggtcatgaatttgctacacgtttgggaaatgtgttcactctt 716 Query: 205 ggcaagggcaccaagccttgggt 227 || ||||| || ||||| ||||| Sbjct: 717 ggtaagggtactaagccgtgggt 739
>gb|AF528526.1| Glycine max 40S ribosomal S4 protein mRNA, complete cds Length = 1054 Score = 69.9 bits (35), Expect = 6e-09 Identities = 135/170 (79%) Strand = Plus / Plus Query: 88 gggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatccac 147 |||||||| || |||||||| ||||||||||||||||| || | ||| ||||| || ||| Sbjct: 665 gggcgtgttggagtgatcaagaacagggagaagcataagggtagctttgagacaattcac 724 Query: 148 gttgaggatgcccagggtcaccagtttgccacccgtctgggcaacgtgttcaccattggc 207 || ||||| || || || | ||||| || || ||||||| |||||||| |||||| Sbjct: 725 gtgcaggattccactggacatgaatttgctactcgcatgggcaatgtgttcactattggc 784 Query: 208 aagggcaccaagccttgggtgagcctncccaagggcaagggtatcaagct 257 |||||||| ||||| ||| | || |||||||| |||||||| ||||| Sbjct: 785 aagggcacaaagccatggatatcactgcccaagggtaagggtattaagct 834
>emb|BX831856.1|CNS09ZNQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH34ZE09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 934 Score = 63.9 bits (32), Expect = 4e-07 Identities = 99/123 (80%) Strand = Plus / Plus Query: 25 attgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaac 84 |||||||| ||||| ||||||||||| || ||||| | ||||||||||| || | ||| Sbjct: 503 attgttgagttcatgaagtttgacgtgggtaacgttgtgatggtgactggaggcagaaac 562 Query: 85 actgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatc 144 | |||||||| |||||||| | ||| | ||||||||||| |||| | | ||||| ||| Sbjct: 563 agcgggcgtgtgggtgtgattcagaaccgtgagaagcataagggaagcgttgagacaatc 622 Query: 145 cac 147 ||| Sbjct: 623 cac 625
>ref|NM_125228.3| Arabidopsis thaliana structural constituent of ribosome AT5G58420 mRNA, complete cds Length = 1080 Score = 60.0 bits (30), Expect = 6e-06 Identities = 68/81 (83%) Strand = Plus / Plus Query: 193 gtgttcaccattggcaagggcaccaagccttgggtgagcctncccaagggcaagggtatc 252 |||| |||||||||||| || || ||||| |||||| || ||||||||||| |||||| Sbjct: 766 gtgtacaccattggcaaaggaacaaagccatgggtgtctcttcccaagggcaaaggtatc 825 Query: 253 aagctcaccatcattgaggag 273 ||||| || ||||| |||||| Sbjct: 826 aagctgactatcatcgaggag 846 Score = 58.0 bits (29), Expect = 2e-05 Identities = 106/132 (80%), Gaps = 1/132 (0%) Strand = Plus / Plus Query: 16 ccaacaagtattgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggt 75 |||||||| ||||| || |||||||||||||| || ||||| || | ||||| || || Sbjct: 590 ccaacaag-attgtcgagttcatcaagtttgatgttggcaatgttgtgatggttacagga 648 Query: 76 gggcgcaacactgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttn 135 || | |||| |||||||| |||||||| || ||| | ||||||||||| |||| ||| Sbjct: 649 ggtagaaacagagggcgtgttggtgtgattaaaaaccgtgagaagcataagggaagcttt 708 Query: 136 gagaccatccac 147 ||||| |||||| Sbjct: 709 gagacaatccac 720
>gb|AY143834.1| Arabidopsis thaliana At5g58420/mqj2_10 mRNA, complete cds Length = 789 Score = 60.0 bits (30), Expect = 6e-06 Identities = 68/81 (83%) Strand = Plus / Plus Query: 193 gtgttcaccattggcaagggcaccaagccttgggtgagcctncccaagggcaagggtatc 252 |||| |||||||||||| || || ||||| |||||| || ||||||||||| |||||| Sbjct: 673 gtgtacaccattggcaaaggaacaaagccatgggtgtctcttcccaagggcaaaggtatc 732 Query: 253 aagctcaccatcattgaggag 273 ||||| || ||||| |||||| Sbjct: 733 aagctgactatcatcgaggag 753 Score = 58.0 bits (29), Expect = 2e-05 Identities = 106/132 (80%), Gaps = 1/132 (0%) Strand = Plus / Plus Query: 16 ccaacaagtattgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggt 75 |||||||| ||||| || |||||||||||||| || ||||| || | ||||| || || Sbjct: 497 ccaacaag-attgtcgagttcatcaagtttgatgttggcaatgttgtgatggttacagga 555 Query: 76 gggcgcaacactgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttn 135 || | |||| |||||||| |||||||| || ||| | ||||||||||| |||| ||| Sbjct: 556 ggtagaaacagagggcgtgttggtgtgattaaaaaccgtgagaagcataagggaagcttt 615 Query: 136 gagaccatccac 147 ||||| |||||| Sbjct: 616 gagacaatccac 627
>gb|AY070467.1| Arabidopsis thaliana AT5g58420/mqj2_10 mRNA, complete cds Length = 995 Score = 60.0 bits (30), Expect = 6e-06 Identities = 68/81 (83%) Strand = Plus / Plus Query: 193 gtgttcaccattggcaagggcaccaagccttgggtgagcctncccaagggcaagggtatc 252 |||| |||||||||||| || || ||||| |||||| || ||||||||||| |||||| Sbjct: 746 gtgtacaccattggcaaaggaacaaagccatgggtgtctcttcccaagggcaaaggtatc 805 Query: 253 aagctcaccatcattgaggag 273 ||||| || ||||| |||||| Sbjct: 806 aagctgactatcatcgaggag 826 Score = 58.0 bits (29), Expect = 2e-05 Identities = 106/132 (80%), Gaps = 1/132 (0%) Strand = Plus / Plus Query: 16 ccaacaagtattgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggt 75 |||||||| ||||| || |||||||||||||| || ||||| || | ||||| || || Sbjct: 570 ccaacaag-attgtcgagttcatcaagtttgatgttggcaatgttgtgatggttacagga 628 Query: 76 gggcgcaacactgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttn 135 || | |||| |||||||| |||||||| || ||| | ||||||||||| |||| ||| Sbjct: 629 ggtagaaacagagggcgtgttggtgtgattaaaaaccgtgagaagcataagggaagcttt 688 Query: 136 gagaccatccac 147 ||||| |||||| Sbjct: 689 gagacaatccac 700
>gb|AF428285.1|AF428285 Arabidopsis thaliana AT5g58420/mqj2_10 mRNA, complete cds Length = 1005 Score = 60.0 bits (30), Expect = 6e-06 Identities = 68/81 (83%) Strand = Plus / Plus Query: 193 gtgttcaccattggcaagggcaccaagccttgggtgagcctncccaagggcaagggtatc 252 |||| |||||||||||| || || ||||| |||||| || ||||||||||| |||||| Sbjct: 757 gtgtacaccattggcaaaggaacaaagccatgggtgtctcttcccaagggcaaaggtatc 816 Query: 253 aagctcaccatcattgaggag 273 ||||| || ||||| |||||| Sbjct: 817 aagctgactatcatcgaggag 837 Score = 58.0 bits (29), Expect = 2e-05 Identities = 106/132 (80%), Gaps = 1/132 (0%) Strand = Plus / Plus Query: 16 ccaacaagtattgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggt 75 |||||||| ||||| || |||||||||||||| || ||||| || | ||||| || || Sbjct: 581 ccaacaag-attgtcgagttcatcaagtttgatgttggcaatgttgtgatggttacagga 639 Query: 76 gggcgcaacactgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttn 135 || | |||| |||||||| |||||||| || ||| | ||||||||||| |||| ||| Sbjct: 640 ggtagaaacagagggcgtgttggtgtgattaaaaaccgtgagaagcataagggaagcttt 699 Query: 136 gagaccatccac 147 ||||| |||||| Sbjct: 700 gagacaatccac 711
>emb|BX832274.1|CNS09ZPH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH62ZE09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 978 Score = 60.0 bits (30), Expect = 6e-06 Identities = 68/81 (83%) Strand = Plus / Plus Query: 193 gtgttcaccattggcaagggcaccaagccttgggtgagcctncccaagggcaagggtatc 252 |||| |||||||||||| || || ||||| |||||| || ||||||||||| |||||| Sbjct: 767 gtgtacaccattggcaaaggaacaaagccatgggtgtctcttcccaagggcaaaggtatc 826 Query: 253 aagctcaccatcattgaggag 273 ||||| || ||||| |||||| Sbjct: 827 aagctgactatcatcgaggag 847 Score = 58.0 bits (29), Expect = 2e-05 Identities = 106/132 (80%), Gaps = 1/132 (0%) Strand = Plus / Plus Query: 16 ccaacaagtattgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggt 75 |||||||| ||||| || |||||||||||||| || ||||| || | ||||| || || Sbjct: 591 ccaacaag-attgtcgagttcatcaagtttgatgttggcaatgttgtgatggttacagga 649 Query: 76 gggcgcaacactgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttn 135 || | |||| |||||||| |||||||| || ||| | ||||||||||| |||| ||| Sbjct: 650 ggtagaaacagagggcgtgttggtgtgattaaaaaccgtgagaagcataagggaagcttt 709 Query: 136 gagaccatccac 147 ||||| |||||| Sbjct: 710 gagacaatccac 721
>emb|BX832133.1|CNS09ZP1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH53ZH10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 537 Score = 60.0 bits (30), Expect = 6e-06 Identities = 68/81 (83%) Strand = Plus / Plus Query: 193 gtgttcaccattggcaagggcaccaagccttgggtgagcctncccaagggcaagggtatc 252 |||| |||||||||||| || || ||||| |||||| || ||||||||||| |||||| Sbjct: 286 gtgtacaccattggcaaaggaacaaagccatgggtgtctcttcccaagggcaaaggtatc 345 Query: 253 aagctcaccatcattgaggag 273 ||||| || ||||| |||||| Sbjct: 346 aagctgactatcatcgaggag 366 Score = 58.0 bits (29), Expect = 2e-05 Identities = 106/132 (80%), Gaps = 1/132 (0%) Strand = Plus / Plus Query: 16 ccaacaagtattgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggt 75 |||||||| ||||| || |||||||||||||| || ||||| || | ||||| || || Sbjct: 110 ccaacaag-attgtcgagttcatcaagtttgatgttggcaatgttgtgatggttacagga 168 Query: 76 gggcgcaacactgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttn 135 || | |||| |||||||| |||||||| || ||| | ||||||||||| |||| ||| Sbjct: 169 ggtagaaacagagggcgtgttggtgtgattaaaaaccgtgagaagcataagggaagcttt 228 Query: 136 gagaccatccac 147 ||||| |||||| Sbjct: 229 gagacaatccac 240
>emb|BX830283.1|CNS09ZZO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB70ZD03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 988 Score = 60.0 bits (30), Expect = 6e-06 Identities = 68/81 (83%) Strand = Plus / Plus Query: 193 gtgttcaccattggcaagggcaccaagccttgggtgagcctncccaagggcaagggtatc 252 |||| |||||||||||| || || ||||| |||||| || ||||||||||| |||||| Sbjct: 737 gtgtacaccattggcaaaggaacaaagccatgggtgtctcttcccaagggcaaaggtatc 796 Query: 253 aagctcaccatcattgaggag 273 ||||| || ||||| |||||| Sbjct: 797 aagctgactatcatcgaggag 817 Score = 58.0 bits (29), Expect = 2e-05 Identities = 106/132 (80%), Gaps = 1/132 (0%) Strand = Plus / Plus Query: 16 ccaacaagtattgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggt 75 |||||||| ||||| || |||||||||||||| || ||||| || | ||||| || || Sbjct: 561 ccaacaag-attgtcgagttcatcaagtttgatgttggcaatgttgtgatggttacagga 619 Query: 76 gggcgcaacactgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttn 135 || | |||| |||||||| |||||||| || ||| | ||||||||||| |||| ||| Sbjct: 620 ggtagaaacagagggcgtgttggtgtgattaaaaaccgtgagaagcataagggaagcttt 679 Query: 136 gagaccatccac 147 ||||| |||||| Sbjct: 680 gagacaatccac 691
>emb|BX830139.1|CNS09ZZ0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB61ZG04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 737 Score = 60.0 bits (30), Expect = 6e-06 Identities = 68/81 (83%) Strand = Plus / Plus Query: 193 gtgttcaccattggcaagggcaccaagccttgggtgagcctncccaagggcaagggtatc 252 |||| |||||||||||| || || ||||| |||||| || ||||||||||| |||||| Sbjct: 486 gtgtacaccattggcaaaggaacaaagccatgggtgtctcttcccaagggcaaaggtatc 545 Query: 253 aagctcaccatcattgaggag 273 ||||| || ||||| |||||| Sbjct: 546 aagctgactatcatcgaggag 566 Score = 58.0 bits (29), Expect = 2e-05 Identities = 106/132 (80%), Gaps = 1/132 (0%) Strand = Plus / Plus Query: 16 ccaacaagtattgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggt 75 |||||||| ||||| || |||||||||||||| || ||||| || | ||||| || || Sbjct: 310 ccaacaag-attgtcgagttcatcaagtttgatgttggcaatgttgtgatggttacagga 368 Query: 76 gggcgcaacactgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttn 135 || | |||| |||||||| |||||||| || ||| | ||||||||||| |||| ||| Sbjct: 369 ggtagaaacagagggcgtgttggtgtgattaaaaaccgtgagaagcataagggaagcttt 428 Query: 136 gagaccatccac 147 ||||| |||||| Sbjct: 429 gagacaatccac 440
>emb|BX829418.1|CNS09ZZ4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB12ZD07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 566 Score = 60.0 bits (30), Expect = 6e-06 Identities = 68/81 (83%) Strand = Plus / Plus Query: 193 gtgttcaccattggcaagggcaccaagccttgggtgagcctncccaagggcaagggtatc 252 |||| |||||||||||| || || ||||| |||||| || ||||||||||| |||||| Sbjct: 315 gtgtacaccattggcaaaggaacaaagccatgggtgtctcttcccaagggcaaaggtatc 374 Query: 253 aagctcaccatcattgaggag 273 ||||| || ||||| |||||| Sbjct: 375 aagctgactatcatcgaggag 395 Score = 58.0 bits (29), Expect = 2e-05 Identities = 106/132 (80%), Gaps = 1/132 (0%) Strand = Plus / Plus Query: 16 ccaacaagtattgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggt 75 |||||||| ||||| || |||||||||||||| || ||||| || | ||||| || || Sbjct: 139 ccaacaag-attgtcgagttcatcaagtttgatgttggcaatgttgtgatggttacagga 197 Query: 76 gggcgcaacactgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttn 135 || | |||| |||||||| |||||||| || ||| | ||||||||||| |||| ||| Sbjct: 198 ggtagaaacagagggcgtgttggtgtgattaaaaaccgtgagaagcataagggaagcttt 257 Query: 136 gagaccatccac 147 ||||| |||||| Sbjct: 258 gagacaatccac 269
>emb|BX832264.1|CNS09ZM6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH61ZG11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 997 Score = 60.0 bits (30), Expect = 6e-06 Identities = 68/81 (83%) Strand = Plus / Plus Query: 193 gtgttcaccattggcaagggcaccaagccttgggtgagcctncccaagggcaagggtatc 252 |||| |||||||||||| || || ||||| |||||| || ||||||||||| |||||| Sbjct: 746 gtgtacaccattggcaaaggaacaaagccatgggtgtctcttcccaagggcaaaggtatc 805 Query: 253 aagctcaccatcattgaggag 273 ||||| || ||||| |||||| Sbjct: 806 aagctgactatcatcgaggag 826 Score = 58.0 bits (29), Expect = 2e-05 Identities = 106/132 (80%), Gaps = 1/132 (0%) Strand = Plus / Plus Query: 16 ccaacaagtattgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggt 75 |||||||| ||||| || |||||||||||||| || ||||| || | ||||| || || Sbjct: 570 ccaacaag-attgtcgagttcatcaagtttgatgttggcaatgttgtgatggttacagga 628 Query: 76 gggcgcaacactgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttn 135 || | |||| |||||||| |||||||| || ||| | ||||||||||| |||| ||| Sbjct: 629 ggtagaaacagagggcgtgttggtgtgattaaaaaccgtgagaagcataagggaagcttt 688 Query: 136 gagaccatccac 147 ||||| |||||| Sbjct: 689 gagacaatccac 700
>gb|AY086206.1| Arabidopsis thaliana clone 22434 mRNA, complete sequence Length = 1010 Score = 60.0 bits (30), Expect = 6e-06 Identities = 68/81 (83%) Strand = Plus / Plus Query: 193 gtgttcaccattggcaagggcaccaagccttgggtgagcctncccaagggcaagggtatc 252 |||| |||||||||||| || || ||||| |||||| || ||||||||||| |||||| Sbjct: 761 gtgtacaccattggcaaaggaacaaagccatgggtgtctcttcccaagggcaaaggtatc 820 Query: 253 aagctcaccatcattgaggag 273 ||||| || ||||| |||||| Sbjct: 821 aagctgactatcatcgaggag 841 Score = 58.0 bits (29), Expect = 2e-05 Identities = 106/132 (80%), Gaps = 1/132 (0%) Strand = Plus / Plus Query: 16 ccaacaagtattgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggt 75 |||||||| ||||| || |||||||||||||| || ||||| || | ||||| || || Sbjct: 585 ccaacaag-attgtggagttcatcaagtttgatgttggcaatgttgtgatggttacagga 643 Query: 76 gggcgcaacactgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttn 135 || | |||| |||||||| |||||||| || ||| | ||||||||||| |||| ||| Sbjct: 644 ggtagaaacagagggcgtgttggtgtgattaaaaaccgtgagaagcataagggaagcttt 703 Query: 136 gagaccatccac 147 ||||| |||||| Sbjct: 704 gagacaatccac 715
>dbj|AB025632.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQJ2 Length = 51440 Score = 60.0 bits (30), Expect = 6e-06 Identities = 68/81 (83%) Strand = Plus / Plus Query: 193 gtgttcaccattggcaagggcaccaagccttgggtgagcctncccaagggcaagggtatc 252 |||| |||||||||||| || || ||||| |||||| || ||||||||||| |||||| Sbjct: 6818 gtgtacaccattggcaaaggaacaaagccatgggtgtctcttcccaagggcaaaggtatc 6877 Query: 253 aagctcaccatcattgaggag 273 ||||| || ||||| |||||| Sbjct: 6878 aagctgactatcatcgaggag 6898 Score = 58.0 bits (29), Expect = 2e-05 Identities = 106/132 (80%), Gaps = 1/132 (0%) Strand = Plus / Plus Query: 16 ccaacaagtattgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggt 75 |||||||| ||||| || |||||||||||||| || ||||| || | ||||| || || Sbjct: 6642 ccaacaag-attgtcgagttcatcaagtttgatgttggcaatgttgtgatggttacagga 6700 Query: 76 gggcgcaacactgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttn 135 || | |||| |||||||| |||||||| || ||| | ||||||||||| |||| ||| Sbjct: 6701 ggtagaaacagagggcgtgttggtgtgattaaaaaccgtgagaagcataagggaagcttt 6760 Query: 136 gagaccatccac 147 ||||| |||||| Sbjct: 6761 gagacaatccac 6772
>ref|XM_366671.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein (MG02747.4) partial mRNA Length = 735 Score = 58.0 bits (29), Expect = 2e-05 Identities = 40/44 (90%) Strand = Plus / Plus Query: 231 cctncccaagggcaagggtatcaagctcaccatcattgaggagc 274 ||| ||||||||||||||| |||||||||||||| |||||||| Sbjct: 654 cctgcccaagggcaagggtgtcaagctcaccatcgctgaggagc 697
>gb|AY110862.1| Zea mays CL1882_8 mRNA sequence Length = 728 Score = 58.0 bits (29), Expect = 2e-05 Identities = 44/50 (88%) Strand = Plus / Plus Query: 100 gtgatcaanaacagggagaagcataanggaaccttngagaccatccacgt 149 |||||||| |||||||||||||| || || | ||| |||||||||||||| Sbjct: 442 gtgatcaagaacagggagaagcacaagggcagcttcgagaccatccacgt 491 Score = 50.1 bits (25), Expect = 0.006 Identities = 35/39 (89%) Strand = Plus / Plus Query: 82 aacactgggcgtgtnggtgtgatcaanaacagggagaag 120 ||||| |||||||| || |||||||| |||||||||||| Sbjct: 391 aacaccgggcgtgtaggagtgatcaagaacagggagaag 429
>gb|AY850339.1| Magnaporthe grisea 40S ribosomal protein S4-A-like protein mRNA, complete cds Length = 1024 Score = 58.0 bits (29), Expect = 2e-05 Identities = 40/44 (90%) Strand = Plus / Plus Query: 231 cctncccaagggcaagggtatcaagctcaccatcattgaggagc 274 ||| ||||||||||||||| |||||||||||||| |||||||| Sbjct: 723 cctgcccaagggcaagggtgtcaagctcaccatcgctgaggagc 766
>ref|XM_388890.1| Gibberella zeae PH-1 chromosome 2 conserved hypothetical protein (FG08714.1) partial mRNA Length = 732 Score = 56.0 bits (28), Expect = 9e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 235 cccaagggcaagggtatcaagctcaccatcattgaggagc 274 ||||||||||||||| |||||||||||||| |||||||| Sbjct: 658 cccaagggcaagggtgtcaagctcaccatcgctgaggagc 697 Score = 52.0 bits (26), Expect = 0.001 Identities = 63/76 (82%) Strand = Plus / Plus Query: 31 gacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaacactggg 90 |||||||||||||| ||| |||| |||| ||||||| |||||||| ||||||| || Sbjct: 457 gacttcatcaagttcgacaccggcgccgtcgtcatggtcactggtggtcgcaacatgggt 516 Query: 91 cgtgtnggtgtgatca 106 ||||| ||||| |||| Sbjct: 517 cgtgttggtgtcatca 532
>emb|BX833645.1|CNS0A1VP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL68ZB07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 984 Score = 56.0 bits (28), Expect = 9e-05 Identities = 98/123 (79%) Strand = Plus / Plus Query: 25 attgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaac 84 ||||| || ||||||||||||||||| || ||||| | |||||||| || || | ||| Sbjct: 503 attgtcgagttcatcaagtttgacgtgggtaacgttgtgatggtgaccggaggcagaaac 562 Query: 85 actgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccatc 144 | |||||||| |||||||| || ||| | || |||||||| |||| | | ||||| ||| Sbjct: 563 agagggcgtgtgggtgtgattaagaaccgtgaaaagcataagggaagccttgagacaatc 622 Query: 145 cac 147 ||| Sbjct: 623 cac 625
>gb|BT011369.1| Drosophila melanogaster RE57333 full insert cDNA Length = 992 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 175 gccacccgtctgggcaacgtgttcaccattggcaagggcaccaagcc 221 ||||||||| || ||||||||||| |||||||||||||| |||||| Sbjct: 767 gccacccgtttgaccaacgtgttcatcattggcaagggcaacaagcc 813
>ref|NM_168537.1| Drosophila melanogaster Ribosomal protein S4 CG11276-RA, transcript variant A (RpS4), mRNA Length = 983 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 175 gccacccgtctgggcaacgtgttcaccattggcaagggcaccaagcc 221 ||||||||| || ||||||||||| |||||||||||||| |||||| Sbjct: 767 gccacccgtttgaccaacgtgttcatcattggcaagggcaacaagcc 813
>ref|NM_079329.2| Drosophila melanogaster Ribosomal protein S4 CG11276-RB, transcript variant B (RpS4), mRNA Length = 969 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 175 gccacccgtctgggcaacgtgttcaccattggcaagggcaccaagcc 221 ||||||||| || ||||||||||| |||||||||||||| |||||| Sbjct: 753 gccacccgtttgaccaacgtgttcatcattggcaagggcaacaagcc 799
>gb|AC093546.2| Drosophila melanogaster 3L BAC RP98-8G7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 207761 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 175 gccacccgtctgggcaacgtgttcaccattggcaagggcaccaagcc 221 ||||||||| || ||||||||||| |||||||||||||| |||||| Sbjct: 141886 gccacccgtttgaccaacgtgttcatcattggcaagggcaacaagcc 141932
>gb|AE003539.3| Drosophila melanogaster chromosome 3L, section 46 of 83 of the complete sequence Length = 272016 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 175 gccacccgtctgggcaacgtgttcaccattggcaagggcaccaagcc 221 ||||||||| || ||||||||||| |||||||||||||| |||||| Sbjct: 169820 gccacccgtttgaccaacgtgttcatcattggcaagggcaacaagcc 169866
>dbj|D16257.1|DRORPS4 Drosophila melanogaster rpS4 mRNA for ribosomal protein S4, complete cds Length = 870 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 175 gccacccgtctgggcaacgtgttcaccattggcaagggcaccaagcc 221 ||||||||| || ||||||||||| |||||||||||||| |||||| Sbjct: 667 gccacccgtttgaccaacgtgttcatcattggcaagggcaacaagcc 713
>ref|XM_502766.1| Yarrowia lipolytica CLIB122, YALI0D12903g predicted mRNA Length = 783 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 235 cccaagggcaagggtatcaagctcaccat 263 |||||||||||||||||||||||| |||| Sbjct: 715 cccaagggcaagggtatcaagctctccat 743
>gb|AF054511.1|AF054511 Yarrowia lipolytica ribosomal protein S7 (RPS7) mRNA, complete cds Length = 852 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 235 cccaagggcaagggtatcaagctcaccat 263 |||||||||||||||||||||||| |||| Sbjct: 717 cccaagggcaagggtatcaagctctccat 745
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 235 cccaagggcaagggtatcaagctcaccat 263 |||||||||||||||||||||||| |||| Sbjct: 1601919 cccaagggcaagggtatcaagctctccat 1601891
>gb|BT018605.1| Zea mays clone EL01N0450E04.d mRNA sequence Length = 1698 Score = 48.1 bits (24), Expect = 0.023 Identities = 29/31 (93%) Strand = Plus / Plus Query: 41 agtttgacgtcggcaacgtcntcatggtgac 71 ||||||||||||||||||| |||||||||| Sbjct: 1326 agtttgacgtcggcaacgtggtcatggtgac 1356
>ref|XM_783401.1| PREDICTED: Strongylocentrotus purpuratus similar to CG11276-PA, isoform A (LOC583495), partial mRNA Length = 285 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Plus Query: 174 tgccacccgtctgggcaacgtgtt 197 |||||||||||||||||||||||| Sbjct: 156 tgccacccgtctgggcaacgtgtt 179
>gb|DQ445520.1| Graphocephala atropunctata isolate WHGA0585 putative ribosomal protein S4e mRNA, complete cds Length = 792 Score = 48.1 bits (24), Expect = 0.023 Identities = 30/32 (93%) Strand = Plus / Plus Query: 190 aacgtgttcaccattggcaagggcaccaagcc 221 ||||| |||| ||||||||||||||||||||| Sbjct: 670 aacgtcttcatcattggcaagggcaccaagcc 701
>emb|X79300.1|GHRS4E G.hirsutum (DPL 62) mRNA for ribosomal protein small subunit 4e Length = 1090 Score = 48.1 bits (24), Expect = 0.023 Identities = 94/119 (78%) Strand = Plus / Plus Query: 25 attgttgacttcatcaagtttgacgtcggcaacgtcntcatggtgactggtgggcgcaac 84 ||||| || ||||||||||||||||| || || || ||||||| || || || | ||| Sbjct: 560 attgtcgatttcatcaagtttgacgttgggaatgttgtcatggtcaccggaggaaggaac 619 Query: 85 actgggcgtgtnggtgtgatcaanaacagggagaagcataanggaaccttngagaccat 143 | || ||||| || || || || ||||||||||||||||| || | ||| |||||||| Sbjct: 620 agaggtcgtgttggagtaattaaaaacagggagaagcataagggtagctttgagaccat 678
>gb|BT014201.1| Lycopersicon esculentum clone 133378R, mRNA sequence Length = 1292 Score = 46.1 bits (23), Expect = 0.090 Identities = 23/23 (100%) Strand = Plus / Plus Query: 25 attgttgacttcatcaagtttga 47 ||||||||||||||||||||||| Sbjct: 585 attgttgacttcatcaagtttga 607
>emb|BX067601.1|CNS09OBP Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC51BD11 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 862 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 190 aacgtgttcaccattggcaagggcaccaag 219 |||||||||||||| |||||| |||||||| Sbjct: 311 aacgtgttcaccatcggcaagagcaccaag 282
>emb|BX067600.1|CNS09OBO Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC51BD11 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1037 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 190 aacgtgttcaccattggcaagggcaccaag 219 |||||||||||||| |||||| |||||||| Sbjct: 683 aacgtgttcaccatcggcaagagcaccaag 712
>ref|XM_775416.1| PREDICTED: Strongylocentrotus purpuratus similar to 40S ribosomal protein S4, X isoform (LOC574997), mRNA Length = 825 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Plus Query: 174 tgccacccgtctgggcaacgtgttcaccattggcaagg 211 |||||||||||| |||||||||||| ||| ||||||| Sbjct: 696 tgccacccgtcttggcaacgtgttcgtcatcggcaagg 733
>gb|AY439895.1| Armigeres subalbatus ASAP ID: 38941 cytosolic small ribosomal subunit S4 mRNA sequence Length = 960 Score = 42.1 bits (21), Expect = 1.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 175 gccacccgtctgggcaacgtgttcaccattggcaagggcaccaag 219 |||||||||||| |||||||||| ||| ||||||| ||||||| Sbjct: 685 gccacccgtctgactaacgtgttcatcatcggcaaggccaccaag 729
>gb|AY433736.1| Aedes aegypti ASAP ID: 34407 cytosolic small ribosomal subunit S4 mRNA sequence Length = 755 Score = 42.1 bits (21), Expect = 1.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 175 gccacccgtctgggcaacgtgttcaccattggcaagggcaccaag 219 |||||||||||| |||||| |||| |||||| |||| ||||||| Sbjct: 400 gccacccgtctgaccaacgttttcatcattggtaaggccaccaag 444
>gb|DQ440018.1| Aedes aegypti clone AE-221 40S ribosomal protein S4 mRNA, complete cds Length = 789 Score = 42.1 bits (21), Expect = 1.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 175 gccacccgtctgggcaacgtgttcaccattggcaagggcaccaag 219 |||||||||||| |||||| |||| |||||| |||| ||||||| Sbjct: 655 gccacccgtctgaccaacgttttcatcattggtaaggccaccaag 699
>ref|XM_657306.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN4794.2), mRNA Length = 720 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 235 cccaagggcaagggtatcaagctcaccat 263 ||||||||||||||| |||||||| |||| Sbjct: 646 cccaagggcaagggtgtcaagctctccat 674
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 cacgttgaggatgcccagggtcacc 169 ||||||||| ||||||||||||||| Sbjct: 4589172 cacgttgagcatgcccagggtcacc 4589196
>ref|XM_749829.1| Aspergillus fumigatus Af293 cytosolic small ribosomal subunit S4 (Afu3g06840) partial mRNA Length = 786 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 235 cccaagggcaagggtatcaagctcaccat 263 ||||||||||||||| | ||||||||||| Sbjct: 712 cccaagggcaagggtgttaagctcaccat 740
>emb|CR938551.1| Single read from an extremity of a full-length cDNA clone made from Aedes aegypti total adult females. 5-prime end of clone KW0AAA1YI07AAM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 747 Score = 42.1 bits (21), Expect = 1.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 175 gccacccgtctgggcaacgtgttcaccattggcaagggcaccaag 219 |||||||||||| |||||| |||| |||||| |||| ||||||| Sbjct: 677 gccacccgtctgaccaacgttttcatcattggtaaggccaccaag 721
>emb|CR938407.1| Single read from an extremity of a full-length cDNA clone made from Aedes aegypti total adult females. 5-prime end of clone KW0AAA2YA05AAM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 806 Score = 42.1 bits (21), Expect = 1.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 175 gccacccgtctgggcaacgtgttcaccattggcaagggcaccaag 219 |||||||||||| |||||| |||| |||||| |||| ||||||| Sbjct: 676 gccacccgtctgaccaacgttttcatcattggtaaggccaccaag 720
>emb|CR938406.1| Single read from an extremity of a full-length cDNA clone made from Aedes aegypti total adult females. 3-prime end of clone KW0AAA2YA05BBM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 605 Score = 42.1 bits (21), Expect = 1.4 Identities = 39/45 (86%) Strand = Plus / Minus Query: 175 gccacccgtctgggcaacgtgttcaccattggcaagggcaccaag 219 |||||||||||| |||||| |||| |||||| |||| ||||||| Sbjct: 340 gccacccgtctgaccaacgttttcatcattggtaaggccaccaag 296
>emb|CR938380.1| Single read from an extremity of a full-length cDNA clone made from Aedes aegypti total adult females. 5-prime end of clone KW0AAA2YB03AAM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 808 Score = 42.1 bits (21), Expect = 1.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 175 gccacccgtctgggcaacgtgttcaccattggcaagggcaccaag 219 |||||||||||| |||||| |||| |||||| |||| ||||||| Sbjct: 678 gccacccgtctgaccaacgttttcatcattggtaaggccaccaag 722
>emb|CR938366.1| Single read from an extremity of a full-length cDNA clone made from Aedes aegypti total adult females. 5-prime end of clone KW0AAA2YB15AAM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 810 Score = 42.1 bits (21), Expect = 1.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 175 gccacccgtctgggcaacgtgttcaccattggcaagggcaccaag 219 |||||||||||| |||||| |||| |||||| |||| ||||||| Sbjct: 679 gccacccgtctgaccaacgttttcatcattggtaaggccaccaag 723
>gb|AE012037.1| Xanthomonas axonopodis pv. citri str. 306, section 415 of 469 of the complete genome Length = 10848 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 cacgttgaggatgcccagggtcacc 169 ||||||||| ||||||||||||||| Sbjct: 8104 cacgttgagcatgcccagggtcacc 8128
>gb|BC081584.1| Danio rerio ribosomal protein S4, X-linked, mRNA (cDNA clone MGC:92076 IMAGE:7046733), complete cds Length = 888 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 201 cattggcaagggcaccaagccttgggtg 228 |||||||||||||| |||||| |||||| Sbjct: 688 cattggcaagggcaacaagccatgggtg 715
>ref|NM_001030954.1| Gallus gallus metastasis suppressor 1 (MTSS1), mRNA Length = 2945 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 gcaacgtgttcaccattggc 207 |||||||||||||||||||| Sbjct: 1789 gcaacgtgttcaccattggc 1770
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 235 cccaagggcaagggtatcaagctc 258 ||||||||||||||| |||||||| Sbjct: 1677718 cccaagggcaagggtgtcaagctc 1677741
>gb|AC101844.7| Mus musculus chromosome 7, clone RP23-257M22, complete sequence Length = 197827 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 tcattgaggagcagaggaag 282 |||||||||||||||||||| Sbjct: 23769 tcattgaggagcagaggaag 23788
>gb|AC147681.8| Canis Familiaris, clone XX-10A1, complete sequence Length = 160031 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 gaggagcagaggaagaggga 287 |||||||||||||||||||| Sbjct: 75392 gaggagcagaggaagaggga 75373
>gb|AC154910.3| Mus musculus BAC clone RP23-70L9 from chromosome 12, complete sequence Length = 243671 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 agaactatgttcctggaacc 387 |||||||||||||||||||| Sbjct: 192032 agaactatgttcctggaacc 192051
>ref|XM_567206.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNA06200) partial mRNA Length = 840 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 235 cccaagggcaagggtatcaagctc 258 ||||||||||||||| |||||||| Sbjct: 715 cccaagggcaagggtgtcaagctc 738
>gb|AC132320.4| Mus musculus BAC clone RP24-259L9 from chromosome 18, complete sequence Length = 156239 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 attgaggagcagaggaagag 284 |||||||||||||||||||| Sbjct: 47335 attgaggagcagaggaagag 47354
>ref|NM_001005589.1| Danio rerio ribosomal protein S4, X-linked (rps4x), mRNA Length = 888 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 201 cattggcaagggcaccaagccttgggtg 228 |||||||||||||| |||||| |||||| Sbjct: 688 cattggcaagggcaacaagccatgggtg 715
>gb|BC025658.1| Homo sapiens glycine/arginine rich protein 1, mRNA (cDNA clone MGC:34152 IMAGE:5198480), complete cds Length = 1554 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 298 caggctgctgccaaggcctgattc 321 ||||| |||||||||||||||||| Sbjct: 398 caggcggctgccaaggcctgattc 421
>emb|AL731567.6| Human DNA sequence from clone RP11-67C2 on chromosome 10 Contains the ALOX5 gene for arachidonate 5-lipoxygenase, a novel gene, the 3' end of a gene for cellular modulator of immune recognition (c-MIR) and five CpG islands, complete sequence Length = 129266 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 348 ccagttatctgcaaggatatagaa 371 ||||||||||| |||||||||||| Sbjct: 81451 ccagttatctgtaaggatatagaa 81474
>ref|XM_505600.1| Yarrowia lipolytica CLIB122, YALI0F18920g predicted mRNA Length = 1485 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 tcattgaggagcagaggaag 282 |||||||||||||||||||| Sbjct: 1007 tcattgaggagcagaggaag 1026
>ref|XM_795025.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC581083 (LOC581083), mRNA Length = 1197 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 gaggagcagaggaagaggga 287 |||||||||||||||||||| Sbjct: 745 gaggagcagaggaagaggga 764
>emb|AJ719272.1| Gallus gallus mRNA for hypothetical protein, clone 1a13 Length = 2945 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 gcaacgtgttcaccattggc 207 |||||||||||||||||||| Sbjct: 1789 gcaacgtgttcaccattggc 1770
>gb|AC021070.24| Homo sapiens 12 BAC RP11-460N10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162978 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 tattgttgacttcatcaagt 43 |||||||||||||||||||| Sbjct: 97704 tattgttgacttcatcaagt 97723
>emb|BX293994.28| Zebrafish DNA sequence from clone DKEY-256K14 in linkage group 10, complete sequence Length = 210640 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 cattgaggagcagaggaaga 283 |||||||||||||||||||| Sbjct: 25189 cattgaggagcagaggaaga 25208
>gb|AC009806.9| Homo sapiens chromosome 11, clone RP11-51B23, complete sequence Length = 175223 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 ctggaaccatcttttttaag 399 |||||||||||||||||||| Sbjct: 158385 ctggaaccatcttttttaag 158366
>gb|AC150660.4| Mus musculus BAC clone RP23-41F9 from chromosome 15, complete sequence Length = 229655 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 aggatgcccagggtcaccag 171 |||||||||||||||||||| Sbjct: 49842 aggatgcccagggtcaccag 49823
>gb|AC133282.7| Mus musculus chromosome 15, clone RP24-408B1, complete sequence Length = 183129 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 aggatgcccagggtcaccag 171 |||||||||||||||||||| Sbjct: 12824 aggatgcccagggtcaccag 12843
>dbj|BS000205.2| Pan troglodytes chromosome 22 clone:RP43-093B21, map 22, complete sequences Length = 203521 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 tctgcaaggatatagaacta 374 |||||||||||||||||||| Sbjct: 130825 tctgcaaggatatagaacta 130844
>emb|AL096869.8|CNS00YVH Human chromosome 14 DNA sequence BAC R-1078H9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 228097 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 attgaggagcagaggaagag 284 |||||||||||||||||||| Sbjct: 62999 attgaggagcagaggaagag 63018
>gb|AY919674.1| Homo sapiens amyloid beta (A4) precursor protein (protease nexin-II, Alzheimer disease) (APP) gene, complete cds Length = 293960 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 tctgcaaggatatagaacta 374 |||||||||||||||||||| Sbjct: 254435 tctgcaaggatatagaacta 254416
>gb|AC151990.6| Mus musculus BAC clone RP23-299K14 from chromosome 18, complete sequence Length = 205253 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 attgaggagcagaggaagag 284 |||||||||||||||||||| Sbjct: 62251 attgaggagcagaggaagag 62232
>dbj|AP001694.1| Homo sapiens genomic DNA, chromosome 21q, section 38/105 Length = 340000 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 tctgcaaggatatagaacta 374 |||||||||||||||||||| Sbjct: 325168 tctgcaaggatatagaacta 325187
>gb|AC140464.3| Mus musculus BAC clone RP24-383H6 from 12, complete sequence Length = 113482 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 agaactatgttcctggaacc 387 |||||||||||||||||||| Sbjct: 64177 agaactatgttcctggaacc 64196
>gb|AC102003.5| Mus musculus chromosome 7, clone RP24-488I10, complete sequence Length = 150428 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 tcattgaggagcagaggaag 282 |||||||||||||||||||| Sbjct: 147421 tcattgaggagcagaggaag 147440
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 tcattgaggagcagaggaag 282 |||||||||||||||||||| Sbjct: 2525929 tcattgaggagcagaggaag 2525910
>emb|AL139193.4|CNS01DXA Human chromosome 14 DNA sequence BAC R-661G16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 162691 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 attgaggagcagaggaagag 284 |||||||||||||||||||| Sbjct: 27593 attgaggagcagaggaagag 27574
>dbj|AP000141.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL56-APP region, clone B2291C14-R44F3, segment 6/10, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 tctgcaaggatatagaacta 374 |||||||||||||||||||| Sbjct: 24464 tctgcaaggatatagaacta 24483
>dbj|D87675.1| Homo sapiens DNA for amyloid precursor protein, complete cds Length = 301692 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 tctgcaaggatatagaacta 374 |||||||||||||||||||| Sbjct: 258148 tctgcaaggatatagaacta 258129
>dbj|AP001442.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:T1715, LL56-APP region, complete sequence Length = 68001 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 tctgcaaggatatagaacta 374 |||||||||||||||||||| Sbjct: 7592 tctgcaaggatatagaacta 7611
>dbj|AP000088.1| Homo sapiens genomic DNA of 21q22.1, APP related, B2291C14-T1533 region, segment 5/7 Length = 161014 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 tctgcaaggatatagaacta 374 |||||||||||||||||||| Sbjct: 124464 tctgcaaggatatagaacta 124483 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,117,025 Number of Sequences: 3902068 Number of extensions: 3117025 Number of successful extensions: 64124 Number of sequences better than 10.0: 119 Number of HSP's better than 10.0 without gapping: 119 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63786 Number of HSP's gapped (non-prelim): 331 length of query: 413 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 391 effective length of database: 17,147,199,772 effective search space: 6704555110852 effective search space used: 6704555110852 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
