ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags17c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009646.1| Triticum aestivum clone wrsu1.pk0006.a3:fis, full... 64 1e-08
2gb|AC159301.2| Mus musculus BAC clone RP23-213B1 from chromosome... 42 0.043
3ref|XM_464784.1| Oryza sativa (japonica cultivar-group), mRNA 38 0.67
4gb|AC026585.9| Homo sapiens, clone RP11-17E3, complete sequence 38 0.67
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 0.67
6gb|AC023399.4|AC023399 Homo sapiens chromosome 17, clone RP11-78... 38 0.67
7gb|AC005177.1|AC005177 Homo sapiens chromosome 17, clone HCIT462... 38 0.67
8gb|AY568677.1| Oryza sativa (japonica cultivar-group) proline- a... 38 0.67
9dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic D... 38 0.67
10dbj|AK058752.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 0.67
11dbj|AP005897.1| Homo sapiens genomic DNA, chromosome 11 clone:CM... 38 0.67
12gb|AC164098.4| Mus musculus BAC clone RP23-341D24 from chromosom... 36 2.7
13emb|AL606804.11| Human DNA sequence from clone RP11-978I15 on ch... 36 2.7
14emb|AL596211.5| Human DNA sequence from clone RP11-201A3 on chro... 36 2.7
15emb|AL731632.2|OSJN00275 Oryza sativa genomic DNA, chromosome 4,... 36 2.7
16gb|AC024474.8| Homo sapiens chromosome 15, clone RP11-686I6, com... 36 2.7
17gb|AC079070.6| Homo sapiens chromosome 18, clone RP11-126K15, co... 36 2.7
18dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 36 2.7
19gb|AC107956.8| Homo sapiens chromosome 11, clone RP11-452G18, co... 36 2.7
20gb|AC003692.1|AC003692 Human Chromosome 11 pac pDJ306b4, complet... 36 2.7
21gb|AC127522.7| Homo sapiens chromosome 15, clone RP13-126C7, com... 36 2.7

>gb|BT009646.1| Triticum aestivum clone wrsu1.pk0006.a3:fis, full insert mRNA
           sequence
          Length = 936

 Score = 63.9 bits (32), Expect = 1e-08
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                           
Query: 1   gcaagaagctaggaaatatgcatgatgcactc 32
           ||||||||||||||||||||||||||||||||
Sbjct: 419 gcaagaagctaggaaatatgcatgatgcactc 388



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>gb|AC159301.2| Mus musculus BAC clone RP23-213B1 from chromosome 13, complete sequence
          Length = 188633

 Score = 42.1 bits (21), Expect = 0.043
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 5      gaagctaggaaatatgcatga 25
              |||||||||||||||||||||
Sbjct: 108440 gaagctaggaaatatgcatga 108420



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>ref|XM_464784.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 660

 Score = 38.2 bits (19), Expect = 0.67
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                          
Query: 1   gcaagaagctaggaaatatgcatgatgcact 31
           |||||||||||| |||| | |||||||||||
Sbjct: 434 gcaagaagctagaaaatcttcatgatgcact 464



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>gb|AC026585.9| Homo sapiens, clone RP11-17E3, complete sequence
          Length = 172798

 Score = 38.2 bits (19), Expect = 0.67
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 1     gcaagaagctaggaaatatgcat 23
             |||| ||||||||||||||||||
Sbjct: 44666 gcaataagctaggaaatatgcat 44688



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 0.67
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                              
Query: 1       gcaagaagctaggaaatatgcatgatgcact 31
               |||||||||||| |||| | |||||||||||
Sbjct: 7323382 gcaagaagctagaaaatcttcatgatgcact 7323352



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>gb|AC023399.4|AC023399 Homo sapiens chromosome 17, clone RP11-780O8, complete sequence
          Length = 175446

 Score = 38.2 bits (19), Expect = 0.67
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 2     caagaagctaggaaatatg 20
             |||||||||||||||||||
Sbjct: 75846 caagaagctaggaaatatg 75864



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>gb|AC005177.1|AC005177 Homo sapiens chromosome 17, clone HCIT462L7, complete sequence
          Length = 142278

 Score = 38.2 bits (19), Expect = 0.67
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 2     caagaagctaggaaatatg 20
             |||||||||||||||||||
Sbjct: 23024 caagaagctaggaaatatg 23006



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>gb|AY568677.1| Oryza sativa (japonica cultivar-group) proline- and threonine-rich
           protein mRNA, complete cds
          Length = 902

 Score = 38.2 bits (19), Expect = 0.67
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                          
Query: 1   gcaagaagctaggaaatatgcatgatgcact 31
           |||||||||||| |||| | |||||||||||
Sbjct: 498 gcaagaagctagaaaatcttcatgatgcact 528



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>dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0035N08
          Length = 136267

 Score = 38.2 bits (19), Expect = 0.67
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                            
Query: 1     gcaagaagctaggaaatatgcatgatgcact 31
             |||||||||||| |||| | |||||||||||
Sbjct: 99190 gcaagaagctagaaaatcttcatgatgcact 99160



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>dbj|AK058752.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-H10,
          full insert sequence
          Length = 377

 Score = 38.2 bits (19), Expect = 0.67
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                         
Query: 1  gcaagaagctaggaaatatgcatgatgcact 31
          |||||||||||| |||| | |||||||||||
Sbjct: 11 gcaagaagctagaaaatcttcatgatgcact 41



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>dbj|AP005897.1| Homo sapiens genomic DNA, chromosome 11 clone:CMF9-70K11, complete
            sequence
          Length = 10100

 Score = 38.2 bits (19), Expect = 0.67
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 4    agaagctaggaaatatgca 22
            |||||||||||||||||||
Sbjct: 4922 agaagctaggaaatatgca 4940



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>gb|AC164098.4| Mus musculus BAC clone RP23-341D24 from chromosome 1, complete sequence
          Length = 221754

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 1     gcaagaagctaggaaata 18
             ||||||||||||||||||
Sbjct: 94712 gcaagaagctaggaaata 94729



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>emb|AL606804.11| Human DNA sequence from clone RP11-978I15 on chromosome 1 Contains the
             3' end of the CIAS1 gene for cold autoinflammatory
             syndrome 1, the gene for a novel 7 transmembrane receptor
             (rhodopsin family) protein, a 7 transmembrane receptor
             (rhodopsin family) pseudogene, two novel genes (LOC148823,
             LOC148824), the OR2C3 gene for olfactory receptor family 2
             subfamily C member 3, the 3' end of a novel gene, the
             OR2G2 for olfactory receptor family 2 subfamily G member
             2, the OR2G3 for olfactory receptor family 2 subfamily G
             member 3, the gene for a novel protein similar to
             Olfactory receptor 5AV1 (LOC127617) and three CpG islands,
             complete sequence
          Length = 185467

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 7     agctaggaaatatgcatg 24
             ||||||||||||||||||
Sbjct: 39701 agctaggaaatatgcatg 39718



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>emb|AL596211.5| Human DNA sequence from clone RP11-201A3 on chromosome 1, complete
             sequence
          Length = 54940

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 4     agaagctaggaaatatgcatga 25
             |||| |||||||||||||||||
Sbjct: 12749 agaaactaggaaatatgcatga 12728



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>emb|AL731632.2|OSJN00275 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0042I07,
              complete sequence
          Length = 129198

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 14     aaatatgcatgatgcact 31
              ||||||||||||||||||
Sbjct: 101094 aaatatgcatgatgcact 101111



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>gb|AC024474.8| Homo sapiens chromosome 15, clone RP11-686I6, complete sequence
          Length = 194973

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 7      agctaggaaatatgcatg 24
              ||||||||||||||||||
Sbjct: 182513 agctaggaaatatgcatg 182496



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>gb|AC079070.6| Homo sapiens chromosome 18, clone RP11-126K15, complete sequence
          Length = 191464

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 3      aagaagctaggaaatatg 20
              ||||||||||||||||||
Sbjct: 116417 aagaagctaggaaatatg 116400



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                  
Query: 14       aaatatgcatgatgcact 31
                ||||||||||||||||||
Sbjct: 18010814 aaatatgcatgatgcact 18010831



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>gb|AC107956.8| Homo sapiens chromosome 11, clone RP11-452G18, complete sequence
          Length = 188571

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 7      agctaggaaatatgcatg 24
              ||||||||||||||||||
Sbjct: 138211 agctaggaaatatgcatg 138228



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>gb|AC003692.1|AC003692 Human Chromosome 11 pac pDJ306b4, complete sequence
          Length = 71664

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 7     agctaggaaatatgcatg 24
             ||||||||||||||||||
Sbjct: 66055 agctaggaaatatgcatg 66038



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>gb|AC127522.7| Homo sapiens chromosome 15, clone RP13-126C7, complete sequence
          Length = 166914

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 7      agctaggaaatatgcatg 24
              ||||||||||||||||||
Sbjct: 132629 agctaggaaatatgcatg 132612


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 217,220
Number of Sequences: 3902068
Number of extensions: 217220
Number of successful extensions: 54874
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54795
Number of HSP's gapped (non-prelim): 79
length of query: 32
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 12
effective length of database: 17,155,003,908
effective search space: 205860046896
effective search space used: 205860046896
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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