ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags17c11 |
|---|---|
| Clone Library Name | barley_pub |
>EC1_WHEAT (P30569) EC protein I/II (Zinc-metallothionein class II)| Length = 80 Score = 33.5 bits (75), Expect = 0.48 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 4/50 (8%) Frame = -2 Query: 439 CALPSPGTQAC----SHTGPQCNLSTSCRSGQHSGTSSCEASRASIQPGK 302 CA+P PG C + +G T+C G+H G + C R G+ Sbjct: 8 CAVPCPGGTGCRCTSARSGAAAGEHTTCGCGEHCGCNPCACGREGTPSGR 57
>EC3_WHEAT (P30570) EC protein III (Zinc-metallothionein class II)| Length = 80 Score = 33.1 bits (74), Expect = 0.63 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%) Frame = -2 Query: 439 CALPSPGTQACSHTGPQCNLS----TSCRSGQHSGTSSCEASRASIQPGK 302 CA+P PG C T + + + T+C G+H G + C R G+ Sbjct: 8 CAVPCPGGTGCRCTSARSDAAAGEHTTCGCGEHCGCNPCACGREGTPSGR 57
>LYAM3_SHEEP (P98109) P-selectin precursor (Granule membrane protein 140)| (GMP-140) (PADGEM) (Leukocyte-endothelial cell adhesion molecule 3) (LECAM3) (CD62P antigen) Length = 769 Score = 33.1 bits (74), Expect = 0.63 Identities = 19/68 (27%), Positives = 28/68 (41%) Frame = -2 Query: 478 PGLRCAPASYRQSCALPSPGTQACSHTGPQCNLSTSCRSGQHSGTSSCEASRASIQPGKH 299 PGLRC S P+ GT +C H L+T+C G +G + S +P + Sbjct: 577 PGLRCP------SLIAPNQGTMSCQHHLRNFGLNTTCHFGCKAGFTLMGESALQCRPSRQ 630 Query: 298 RFLILTRC 275 + C Sbjct: 631 WTAVAPTC 638
>EC_MAIZE (P43401) EC protein homolog (Zinc-metallothionein class II)| Length = 76 Score = 32.7 bits (73), Expect = 0.82 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Frame = -2 Query: 439 CALPSPGTQAC---SHTGPQCNLSTSCRSGQHSGTSSCEASRASIQPGK 302 CA+P PG + C S +G Q T+C G+H S C RA++ G+ Sbjct: 8 CAVPCPGGKDCRCTSGSGGQRE-HTTCGCGEHCECSPCTCGRATMPSGR 55
>YYC5_CAEEL (Q18610) Hypothetical UPF0017 protein C44C1.5 in chromosome X| Length = 375 Score = 32.3 bits (72), Expect = 1.1 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 6/52 (11%) Frame = +1 Query: 109 IRDGGNVSDVIFSNIKMRTRYYHPSWW---GRAEPI---YITTCPRHPDSRE 246 ++ G + + SN+++ + YHPSWW G + + CP P +RE Sbjct: 32 VKPGTKLQKKVHSNLRILEQKYHPSWWCPFGTTQTVVRQIFRDCPSLPFTRE 83
>STP2_PIG (P29258) Nuclear transition protein 2 (TP-2) (TP2)| Length = 137 Score = 30.8 bits (68), Expect = 3.1 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 9/58 (15%) Frame = -2 Query: 436 ALPSPGTQACSHTGPQCNLSTSCRSGQH--------SGTSSCEASRASIQ-PGKHRFL 290 +LP+ TQ S++GPQ + C H + SC SR+S Q P HR L Sbjct: 7 SLPNAHTQPHSNSGPQSHACNQCSCSHHCQNCSQSCDRSQSCSRSRSSSQSPTGHRSL 64
>DLL3_MOUSE (O88516) Delta-like protein 3 precursor (Drosophila Delta homolog| 3) (M-Delta-3) Length = 592 Score = 30.8 bits (68), Expect = 3.1 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Frame = -2 Query: 487 CQPPGLRCAPASYRQSCALPS---PGTQACSHTGPQCNLSTSCRSGQHSGTSSCE 332 C+PP + A A +S + PS PG + C+ +C + CR G CE Sbjct: 176 CEPPAVGAACARLCRSRSAPSRCGPGLRPCTPFPDECEAPSVCRPGCSPEHGYCE 230
>STP2_RAT (P11101) Nuclear transition protein 2 (TP-2) (TP2)| Length = 114 Score = 30.8 bits (68), Expect = 3.1 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = -2 Query: 430 PSPGTQACSHTGPQCNLSTSCRSGQHSGTSSCEASRASIQPGKH 299 P ++ SHT QC S CRS +G S +S + P KH Sbjct: 15 PHSSSRPQSHTNNQCACSHHCRSCSQAGHPSSSSSPSPGPPTKH 58
>PEX6_HUMAN (Q13608) Peroxisome assembly factor 2 (PAF-2) (Peroxisomal-type| ATPase 1) (Peroxin-6) (Peroxisomal biogenesis factor 6) Length = 980 Score = 30.8 bits (68), Expect = 3.1 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = -3 Query: 528 PPFQASSRPSHTDIVNLQA*DVLQHHTASPVLY-HLLAPRPVVIQAPSVICPPLVGQVNI 352 PPF +R H +IV+ ++ VLY H PR V+Q V+C P +GQV I Sbjct: 315 PPF---ARELHIEIVSSPHYSTNGNYDG--VLYRHFQIPR--VVQEGDVLCVPTIGQVEI 367 Query: 351 LE 346 LE Sbjct: 368 LE 369
>ASCL2_MOUSE (O35885) Achaete-scute homolog 2 (Mash-2)| Length = 263 Score = 30.4 bits (67), Expect = 4.1 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Frame = -2 Query: 481 PPGLRCAPASYRQSCALPSPGTQACSHTGPQ-----CNLSTSCRSGQHSGTSSCEASRAS 317 PP CA Q A P+ + +C+ T P C+ TS RS S SSCE + Sbjct: 194 PPSDECA-----QPSASPASASLSCASTSPSPDRLGCSEPTSPRSAYSSEESSCEGELSP 248 Query: 316 IQ 311 ++ Sbjct: 249 ME 250
>DLL3_HUMAN (Q9NYJ7) Delta-like protein 3 precursor (Drosophila Delta homolog| 3) Length = 618 Score = 30.4 bits (67), Expect = 4.1 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 6/72 (8%) Frame = -2 Query: 487 CQPPGLR------CAPASYRQSCALPSPGTQACSHTGPQCNLSTSCRSGQHSGTSSCEAS 326 C+PP + C P S C PG + C+ +C CR+G CE Sbjct: 178 CEPPAVGTACTRLCRPRSAPSRCG---PGLRPCAPLEDECEAPLVCRAGCSPEHGFCE-- 232 Query: 325 RASIQPGKHRFL 290 QPG+ R L Sbjct: 233 ----QPGECRCL 240
>NOTC4_HUMAN (Q99466) Neurogenic locus notch homolog protein 4 precursor (Notch| 4) (hNotch4) [Contains: Notch 4 extracellular truncation; Notch 4 intracellular domain] Length = 2003 Score = 30.4 bits (67), Expect = 4.1 Identities = 20/46 (43%), Positives = 21/46 (45%), Gaps = 14/46 (30%) Frame = -2 Query: 430 PSPGTQAC----SHTGPQCNLSTS------CRSG----QHSGTSSC 335 PSPG C SHTGPQC ST C +G GT SC Sbjct: 746 PSPGGYYCTCPPSHTGPQCQTSTDYCVSAPCFNGGTCVNRPGTFSC 791
>NOTC3_HUMAN (Q9UM47) Neurogenic locus notch homolog protein 3 precursor (Notch| 3) [Contains: Notch 3 extracellular truncation; Notch 3 intracellular domain] Length = 2321 Score = 30.0 bits (66), Expect = 5.3 Identities = 16/50 (32%), Positives = 22/50 (44%) Frame = -2 Query: 475 GLRCAPASYRQSCALPSPGTQACSHTGPQCNLSTSCRSGQHSGTSSCEAS 326 G RC R++ L PG G +C L C SG +G C++S Sbjct: 52 GGRCTQLPSREAACLCPPGW-----VGERCQLEDPCHSGPCAGRGVCQSS 96
>ADA19_HUMAN (Q9H013) ADAM 19 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 19) (Meltrin beta) (Metalloprotease and disintegrin dentritic antigen marker) (MADDAM) Length = 956 Score = 30.0 bits (66), Expect = 5.3 Identities = 15/37 (40%), Positives = 17/37 (45%) Frame = -2 Query: 478 PGLRCAPASYRQSCALPSPGTQACSHTGPQCNLSTSC 368 PG CA S C L +PGT C QC+L C Sbjct: 453 PGAECAHGSCCHQCKLLAPGT-LCREQARQCDLPEFC 488
>LCE3A_HUMAN (Q5TA76) Late cornified envelope protein 3A (Late envelope protein| 13) Length = 89 Score = 30.0 bits (66), Expect = 5.3 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Frame = -2 Query: 487 CQPPGLRCAPASYRQSCALPSPGTQACSHTGP-QCNLSTSCR--SGQHSGTSSCEASRA 320 C P C P+S R C C + +C S SC SGQ G+SSC S A Sbjct: 32 CAPSSGGCGPSSERSCCL----SHHRCRRSHRCRCQSSNSCDRGSGQQGGSSSCGHSSA 86
>PPARA_XENLA (P37232) Peroxisome proliferator-activated receptor alpha| (PPAR-alpha) Length = 474 Score = 29.6 bits (65), Expect = 6.9 Identities = 17/63 (26%), Positives = 25/63 (39%) Frame = -2 Query: 463 APASYRQSCALPSPGTQACSHTGPQCNLSTSCRSGQHSGTSSCEASRASIQPGKHRFLIL 284 +PAS A S AC +C + + SG H G +CE + + L+ Sbjct: 84 SPASITFPAASGSAEDAACKSLNLECRVCSDKASGFHYGVHACEGCKGFFRRTIRLKLVY 143 Query: 283 TRC 275 RC Sbjct: 144 DRC 146
>TIE2_BOVIN (Q06807) Angiopoietin-1 receptor precursor (EC 2.7.10.1)| (Tyrosine-protein kinase receptor TIE-2) (CD202b antigen) Length = 1125 Score = 29.6 bits (65), Expect = 6.9 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 5/42 (11%) Frame = -2 Query: 466 CAPASYRQSCALPSPGTQ---ACS--HTGPQCNLSTSCRSGQ 356 C P Y SCA G Q AC + GP C L SC +G+ Sbjct: 280 CLPDPYGCSCATGWKGLQCNEACQPGYYGPDCKLRCSCTNGE 321
>NR4A3_RAT (P51179) Orphan nuclear receptor NR4A3 (Nuclear hormone receptor| NOR-1/NOR-2) (Neuron-derived orphan receptor 1/2) Length = 628 Score = 26.6 bits (57), Expect(2) = 8.6 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Frame = -2 Query: 481 PPGLRCAPASYR---QSCALPSPGTQACSHTGPQCNLSTSCRSGQHSGTSSCEASR 323 P GL +P + +S +LPSP ++ S C + + QH G +CE + Sbjct: 260 PLGLTASPTASSLLGESPSLPSPPNRSSSSGEGTCAVCGDNAACQHYGVRTCEGCK 315 Score = 21.2 bits (43), Expect(2) = 8.6 Identities = 9/24 (37%), Positives = 13/24 (54%) Frame = -1 Query: 554 GRKRSGLTSHPFRLPLDHLILTLS 483 G + + L HP+ LPL TL+ Sbjct: 234 GSQAAALEGHPYGLPLAKRTATLT 257
>NR4A3_MOUSE (Q9QZB6) Orphan nuclear receptor NR4A3 (Orphan nuclear receptor| TEC) (Translocated in extraskeletal chondrosarcoma) Length = 627 Score = 26.6 bits (57), Expect(2) = 8.6 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Frame = -2 Query: 481 PPGLRCAPASYR---QSCALPSPGTQACSHTGPQCNLSTSCRSGQHSGTSSCEASR 323 P GL +P + +S +LPSP ++ S C + + QH G +CE + Sbjct: 259 PLGLTASPTASSLLGESPSLPSPPNRSSSSGEGTCAVCGDNAACQHYGVRTCEGCK 314 Score = 21.2 bits (43), Expect(2) = 8.6 Identities = 9/24 (37%), Positives = 13/24 (54%) Frame = -1 Query: 554 GRKRSGLTSHPFRLPLDHLILTLS 483 G + + L HP+ LPL TL+ Sbjct: 233 GSQAAALEGHPYGLPLAKRTATLT 256
>PPNK_BLOPB (Q492C6) Probable inorganic polyphosphate/ATP-NAD kinase (EC| 2.7.1.23) (Poly(P)/ATP NAD kinase) Length = 297 Score = 29.3 bits (64), Expect = 9.1 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = -3 Query: 441 PVLYHLLAPRPVVIQAPSVICPPLVGQVNILELQVAKQAVLRSSQENTVF 292 P+ H L+ RPVVI + S+IC + L++ Q + +E +F Sbjct: 211 PICPHTLSSRPVVINSKSIICLKFSKVTSELKIGYDNQTPVLVCKEEEIF 260
>GCST_LEPIN (Q8F935) Aminomethyltransferase (EC 2.1.2.10) (Glycine cleavage| system T protein) Length = 371 Score = 29.3 bits (64), Expect = 9.1 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%) Frame = +1 Query: 454 MLEH--ISGLEVDNVSMRWSRGSLKGWDVNPL 543 +LEH ISG++VDN S++W + +L+G N + Sbjct: 128 LLEHLPISGVKVDNQSLQWHQIALQGPKANEI 159
>GCST_LEPIC (Q72VI6) Aminomethyltransferase (EC 2.1.2.10) (Glycine cleavage| system T protein) Length = 371 Score = 29.3 bits (64), Expect = 9.1 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%) Frame = +1 Query: 454 MLEH--ISGLEVDNVSMRWSRGSLKGWDVNPL 543 +LEH ISG++VDN S++W + +L+G N + Sbjct: 128 LLEHLPISGVKVDNQSLQWHQIALQGPKANEI 159
>SEM4E_BRARE (Q9YHX4) Semaphorin-4E precursor (Semaphorin-7) (Semaphorin Z7)| (Sema-Z7) Length = 766 Score = 29.3 bits (64), Expect = 9.1 Identities = 18/70 (25%), Positives = 29/70 (41%) Frame = +1 Query: 208 YITTCPRHPDSREGTISDVRFINISSVSENGVFLAGSKHGLLRNLKFQNVDLTYKRWTNY 387 Y P+ S+ + + +I +V G F A NV+ ++ +W Y Sbjct: 313 YAVFTPQSDSSQYSAVCSYKIEDIKTVFSKGKFKAPF-----------NVETSFVKWVMY 361 Query: 388 TGGLYDYRPG 417 +G L D RPG Sbjct: 362 SGELPDPRPG 371
>LCE5A_HUMAN (Q5TCM9) Late cornified envelope protein 5A (Late envelope protein| 18) (Small proline-rich-like epidermal differentiation complex protein 5A) Length = 118 Score = 29.3 bits (64), Expect = 9.1 Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 9/60 (15%) Frame = -2 Query: 487 CQPPGLRCAPASYRQSCALPSPGTQAC-SHTGPQCNL-----STSC---RSGQHSGTSSC 335 C PP C +S C+ S G C SH P+ +L S+SC SGQ SG SSC Sbjct: 44 CPPPVSSCCGSSSGGCCS--SEGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSC 101 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,908,107 Number of Sequences: 219361 Number of extensions: 2138441 Number of successful extensions: 6255 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 5944 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6251 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
