ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal9p21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M61146.1|BLYPSAL Hordeum vulgare photosystem I protein (PSI-L) mRNA, complete cds Length = 777 Score = 831 bits (419), Expect = 0.0 Identities = 419/419 (100%) Strand = Plus / Minus Query: 1 aagagatggcatgatctggagacatcgtacatgcatgccacctattaatctacttgaaga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 712 aagagatggcatgatctggagacatcgtacatgcatgccacctattaatctacttgaaga 653 Query: 61 agtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcgccggatacaccgc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 652 agtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcgccggatacaccgc 593 Query: 121 cgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggagcttgtcggcct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 592 cgaagaagaagcctccggtgaactgcgaccacccttcggcggtctggagcttgtcggcct 533 Query: 181 ccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgccctcgttgaagg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 532 ccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgccctcgttgaagg 473 Query: 241 aggcgacgccgtacatggtgaggcagacgctgaggatggagacgagtccgatggcgccga 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 472 aggcgacgccgtacatggtgaggcagacgctgaggatggagacgagtccgatggcgccga 413 Query: 301 gtgtgccggcctgtccgtgcacgggcgtgttgcggagcgggccagtgagcgcgaaggggc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 412 gtgtgccggcctgtccgtgcacgggcgtgttgcggagcgggccagtgagcgcgaaggggc 353 Query: 361 cgacgaggaggtagccatgggcgaggccgacctcgatgccgcggaggagcgggctgacg 419 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 352 cgacgaggaggtagccatgggcgaggccgacctcgatgccgcggaggagcgggctgacg 294
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 460 bits (232), Expect = e-126 Identities = 337/372 (90%) Strand = Plus / Minus Query: 48 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 107 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 13161383 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 13161324 Query: 108 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 167 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 13161323 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 13161264 Query: 168 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 227 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 13161263 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 13161204 Query: 228 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 287 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 13161203 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 13161144 Query: 288 ccgatggcgccgagtgtgccggcctgtccgtgcacgggcgtgttgcggagcgggccagtg 347 || ||||||||| | ||||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 13161143 cctgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtg 13161084 Query: 348 agcgcgaaggggccgacgaggaggtagccatgggcgaggccgacctcgatgccgcggagg 407 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 13161083 agcgcgaagggcccgacgaggaggtagccgtgggcgaggccgacctcgatgccgcggagc 13161024 Query: 408 agcgggctgacg 419 |||||||||||| Sbjct: 13161023 agcgggctgacg 13161012
>dbj|AK119162.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-D08, full insert sequence Length = 923 Score = 460 bits (232), Expect = e-126 Identities = 337/372 (90%) Strand = Plus / Minus Query: 48 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 107 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 749 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 690 Query: 108 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 167 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 689 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 630 Query: 168 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 227 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 629 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 570 Query: 228 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 287 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 569 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 510 Query: 288 ccgatggcgccgagtgtgccggcctgtccgtgcacgggcgtgttgcggagcgggccagtg 347 || ||||||||| | ||||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 509 cctgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtg 450 Query: 348 agcgcgaaggggccgacgaggaggtagccatgggcgaggccgacctcgatgccgcggagg 407 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 449 agcgcgaagggcccgacgaggaggtagccgtgggcgaggccgacctcgatgccgcggagc 390 Query: 408 agcgggctgacg 419 |||||||||||| Sbjct: 389 agcgggctgacg 378
>dbj|AK099109.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F01, full insert sequence Length = 932 Score = 460 bits (232), Expect = e-126 Identities = 337/372 (90%) Strand = Plus / Minus Query: 48 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 107 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 699 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 640 Query: 108 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 167 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 639 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 580 Query: 168 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 227 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 579 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 520 Query: 228 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 287 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 519 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 460 Query: 288 ccgatggcgccgagtgtgccggcctgtccgtgcacgggcgtgttgcggagcgggccagtg 347 || ||||||||| | ||||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 459 cctgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtg 400 Query: 348 agcgcgaaggggccgacgaggaggtagccatgggcgaggccgacctcgatgccgcggagg 407 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 399 agcgcgaagggcccgacgaggaggtagccgtgggcgaggccgacctcgatgccgcggagc 340 Query: 408 agcgggctgacg 419 |||||||||||| Sbjct: 339 agcgggctgacg 328
>dbj|AK059750.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-B01, full insert sequence Length = 985 Score = 460 bits (232), Expect = e-126 Identities = 337/372 (90%) Strand = Plus / Minus Query: 48 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 107 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 721 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 662 Query: 108 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 167 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 661 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 602 Query: 168 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 227 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 601 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 542 Query: 228 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 287 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 541 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 482 Query: 288 ccgatggcgccgagtgtgccggcctgtccgtgcacgggcgtgttgcggagcgggccagtg 347 || ||||||||| | ||||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 481 cctgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtg 422 Query: 348 agcgcgaaggggccgacgaggaggtagccatgggcgaggccgacctcgatgccgcggagg 407 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 421 agcgcgaagggcccgacgaggaggtagccgtgggcgaggccgacctcgatgccgcggagc 362 Query: 408 agcgggctgacg 419 |||||||||||| Sbjct: 361 agcgggctgacg 350
>dbj|AK058207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-A09, full insert sequence Length = 923 Score = 460 bits (232), Expect = e-126 Identities = 337/372 (90%) Strand = Plus / Minus Query: 48 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 107 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 749 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 690 Query: 108 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 167 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 689 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 630 Query: 168 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 227 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 629 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 570 Query: 228 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 287 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 569 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 510 Query: 288 ccgatggcgccgagtgtgccggcctgtccgtgcacgggcgtgttgcggagcgggccagtg 347 || ||||||||| | ||||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 509 cctgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtg 450 Query: 348 agcgcgaaggggccgacgaggaggtagccatgggcgaggccgacctcgatgccgcggagg 407 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 449 agcgcgaagggcccgacgaggaggtagccgtgggcgaggccgacctcgatgccgcggagc 390 Query: 408 agcgggctgacg 419 |||||||||||| Sbjct: 389 agcgggctgacg 378
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 460 bits (232), Expect = e-126 Identities = 337/372 (90%) Strand = Plus / Minus Query: 48 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 107 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 13115658 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 13115599 Query: 108 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 167 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 13115598 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 13115539 Query: 168 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 227 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 13115538 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 13115479 Query: 228 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 287 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 13115478 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 13115419 Query: 288 ccgatggcgccgagtgtgccggcctgtccgtgcacgggcgtgttgcggagcgggccagtg 347 || ||||||||| | ||||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 13115418 cctgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtg 13115359 Query: 348 agcgcgaaggggccgacgaggaggtagccatgggcgaggccgacctcgatgccgcggagg 407 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 13115358 agcgcgaagggcccgacgaggaggtagccgtgggcgaggccgacctcgatgccgcggagc 13115299 Query: 408 agcgggctgacg 419 |||||||||||| Sbjct: 13115298 agcgggctgacg 13115287
>emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112_F01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 193499 Score = 460 bits (232), Expect = e-126 Identities = 337/372 (90%) Strand = Plus / Plus Query: 48 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 107 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 169359 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 169418 Query: 108 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 167 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 169419 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 169478 Query: 168 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 227 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 169479 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 169538 Query: 228 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 287 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 169539 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 169598 Query: 288 ccgatggcgccgagtgtgccggcctgtccgtgcacgggcgtgttgcggagcgggccagtg 347 || ||||||||| | ||||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 169599 cctgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtg 169658 Query: 348 agcgcgaaggggccgacgaggaggtagccatgggcgaggccgacctcgatgccgcggagg 407 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 169659 agcgcgaagggcccgacgaggaggtagccgtgggcgaggccgacctcgatgccgcggagc 169718 Query: 408 agcgggctgacg 419 |||||||||||| Sbjct: 169719 agcgggctgacg 169730
>emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 178827 Score = 460 bits (232), Expect = e-126 Identities = 337/372 (90%) Strand = Plus / Minus Query: 48 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 107 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | || Sbjct: 150586 atctacttgaagaagtacgggaggtcgagcacgtagaggaggaagtaggcccagaggacg 150527 Query: 108 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 167 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 150526 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 150467 Query: 168 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 227 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 150466 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 150407 Query: 228 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 287 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 150406 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 150347 Query: 288 ccgatggcgccgagtgtgccggcctgtccgtgcacgggcgtgttgcggagcgggccagtg 347 || ||||||||| | ||||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 150346 cctgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtg 150287 Query: 348 agcgcgaaggggccgacgaggaggtagccatgggcgaggccgacctcgatgccgcggagg 407 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 150286 agcgcgaagggcccgacgaggaggtagccgtgggcgaggccgacctcgatgccgcggagc 150227 Query: 408 agcgggctgacg 419 |||||||||||| Sbjct: 150226 agcgggctgacg 150215
>dbj|AK105154.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-F07, full insert sequence Length = 964 Score = 452 bits (228), Expect = e-124 Identities = 336/372 (90%) Strand = Plus / Minus Query: 48 atctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcg 107 ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| | || Sbjct: 704 atctacttgaagaagtacgggagatcgagcacgtagaggaggaagtaggcccagaggacg 645 Query: 108 ccggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgg 167 ||||| | ||||||||||||||||| |||||||||| | ||| || ||||||||||| Sbjct: 644 ccggagatgccgccgaagaagaagccgccggtgaacttggcccagccgtcggcggtctgc 585 Query: 168 agcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcg 227 ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| Sbjct: 584 agcttgtcggcctccttcttgcggccggtgagcgtcagcgtcggcgccgtggacggctcg 525 Query: 228 ccctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagt 287 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 524 ccctcgccgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgagg 465 Query: 288 ccgatggcgccgagtgtgccggcctgtccgtgcacgggcgtgttgcggagcgggccagtg 347 || ||||||||| | ||||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 464 cctgcggcgccgagggcgccggcctggccgtgcaccggcgtgttgcggagcgggccggtg 405 Query: 348 agcgcgaaggggccgacgaggaggtagccatgggcgaggccgacctcgatgccgcggagg 407 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 404 agcgcgaagggcccgacgaggaggtagccgtgggcgaggccgacctcgatgccgcggagc 345 Query: 408 agcgggctgacg 419 |||||||||||| Sbjct: 344 agcgggctgacg 333
>gb|AY103985.1| Zea mays PCO103239 mRNA sequence Length = 1657 Score = 379 bits (191), Expect = e-102 Identities = 323/367 (88%) Strand = Plus / Minus Query: 49 tctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccagacggcgc 108 |||||||||||||||| ||||||||||||||||||||||| ||||| ||||||| ||| Sbjct: 1499 tctacttgaagaagtaggggaggtcgagcacgtagaggagaaagtaggcccagagcacgc 1440 Query: 109 cggatacaccgccgaagaagaagcctccggtgaactgcgaccacccttcggcggtctgga 168 |||| | |||||||||||||| || |||||||||| | ||| || ||||||||||| | Sbjct: 1439 cggagatgccgccgaagaagaaccccccggtgaacttggcccagccgtcggcggtctgca 1380 Query: 169 gcttgtcggcctccttcttgcgtccggtgagggtgagcaccggcgcggtggacggctcgc 228 ||||||||||||||||||| | |||||||| |||||| ||||| |||||||| || | Sbjct: 1379 gcttgtcggcctccttcttcctgccggtgagcgtgagcgtgggcgccgtggacgggtccc 1320 Query: 229 cctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggagacgagtc 288 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct: 1319 cctcgttgaaggaggcgacgccgtacatggtgaggcagacgctgaggatggcgacgaggc 1260 Query: 289 cgatggcgccgagtgtgccggcctgtccgtgcacgggcgtgttgcggagcgggccagtga 348 || ||||||||| | ||||||||| ||||||||||||||| ||||||||||||| |||| Sbjct: 1259 cggcggcgccgagcgcgccggcctggccgtgcacgggcgtgctgcggagcgggcccgtga 1200 Query: 349 gcgcgaaggggccgacgaggaggtagccatgggcgaggccgacctcgatgccgcggagga 408 |||||||||| || |||||||||||||| || |||||||||||||||| ||| || || | Sbjct: 1199 gcgcgaagggccccacgaggaggtagccgtgcgcgaggccgacctcgacgccccgcagca 1140 Query: 409 gcgggct 415 ||||||| Sbjct: 1139 gcgggct 1133
>emb|X57903.1|OS08RG10F O.sativa random single-copy DNA fragment 08RG108F Length = 162 Score = 77.8 bits (39), Expect = 3e-11 Identities = 52/55 (94%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 49 tctacttgaagaagtatgggaggtcgagc-acgtagaggaggaagtatgcccaga 102 |||||||||||||||| |||||||||||| ||||||||||||||||| ||||||| Sbjct: 109 tctacttgaagaagtacgggaggtcgagctacgtagaggaggaagtaggcccaga 55
>dbj|D50456.1|CUSPSAL Cucumis sativus mRNA for PsaL, complete cds Length = 812 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 47 aatctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccaga 102 ||||||||||| | |||| |||||||| | || |||||||||||||||||||||| Sbjct: 737 aatctacttgacgtagtaagggaggtccaagacatagaggaggaagtatgcccaga 682
>dbj|D83007.1|CUSPSALG Cucumis sativus seedling cotyledon psaL mRNA for subunit of photosystem I, complete cds Length = 811 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 47 aatctacttgaagaagtatgggaggtcgagcacgtagaggaggaagtatgcccaga 102 ||||||||||| | |||| |||||||| | || |||||||||||||||||||||| Sbjct: 674 aatctacttgacgtagtaagggaggtccaagacatagaggaggaagtatgcccaga 619
>dbj|AB219568.1| Fragaria x ananassa FrPSI mRNA for photosystem I protein, partial cds Length = 404 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 155 ttcggcggtctggagcttgtcggcctccttcttgcgtccggt 196 ||||||||| ||||||| ||||| |||||||||||| ||||| Sbjct: 183 ttcggcggtttggagctggtcgggctccttcttgcggccggt 142
>emb|X64445.1|SOPSAL S.oleracea psaL mRNA for subunit XI of photosystem I reaction center Length = 834 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 108 ccggatacaccgccgaagaagaagcctccggtgaact 144 ||||| ||||| ||||||||||| ||||||||||||| Sbjct: 676 ccggaaacaccaccgaagaagaaccctccggtgaact 640
>gb|BT018644.1| Zea mays clone EL01N0505B01.d mRNA sequence Length = 1630 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 ccatgggcgaggccgacctcg 395 ||||||||||||||||||||| Sbjct: 977 ccatgggcgaggccgacctcg 997
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 333 cggagcgggccagtgagcgcg 353 ||||||||||||||||||||| Sbjct: 4178375 cggagcgggccagtgagcgcg 4178355 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 gggcgaggccgacctcgatg 398 |||||||||||||||||||| Sbjct: 8946158 gggcgaggccgacctcgatg 8946139
>dbj|AB039379.1| Streptomyces aureofaciens tcsD, tcsE, tcsF, tcsG, genes for beta-ketoacyl synthase, beta-ketoacyl synthase2, acyl carrier protein, asparagine synthase homolog, complete cds Length = 5188 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 208 ccggcgcggtggacggctcgc 228 ||||||||||||||||||||| Sbjct: 2273 ccggcgcggtggacggctcgc 2293
>ref|NM_001037124.1| Danio rerio zgc:123341 (zgc:123341), mRNA Length = 1067 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 tgaggcagacgctgaggatg 278 |||||||||||||||||||| Sbjct: 297 tgaggcagacgctgaggatg 316
>gb|AC150702.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1356E08, complete sequence Length = 136853 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 gcgaaggggccgacgaggag 370 |||||||||||||||||||| Sbjct: 96226 gcgaaggggccgacgaggag 96245
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 ggccgacctcgatgccgcgg 404 |||||||||||||||||||| Sbjct: 2408079 ggccgacctcgatgccgcgg 2408060 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 ggcgaggccgacctcgatgc 399 |||||||||||||||||||| Sbjct: 577032 ggcgaggccgacctcgatgc 577051
>gb|AC109645.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0410D09, complete sequence Length = 43883 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 gcgaaggggccgacgaggag 370 |||||||||||||||||||| Sbjct: 5272 gcgaaggggccgacgaggag 5291
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 384 aggccgacctcgatgccgcggaggagcg 411 ||||||||||||| ||||| |||||||| Sbjct: 6617 aggccgacctcgacgccgctgaggagcg 6590
>gb|AC117192.3| Mus musculus BAC clone RP23-77A18 from 2, complete sequence Length = 161199 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 aatctacttgaagaagtatg 66 |||||||||||||||||||| Sbjct: 143165 aatctacttgaagaagtatg 143184
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 ggccgacctcgatgccgcgg 404 |||||||||||||||||||| Sbjct: 3193784 ggccgacctcgatgccgcgg 3193803
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 155 ttcggcggtctggagcttgtcggc 178 |||||||| ||||||||||||||| Sbjct: 1174925 ttcggcggactggagcttgtcggc 1174948
>emb|AL023553.5|HS347H13 Human DNA sequence from clone RP3-347H13 on chromosome 22 Contains the 3' end of the ACO2 gene for mitochondrial aconitase 2, the gene for a novel protein similar to yeast DNA-directed RNA Polymerase III 25 kD Polypeptide, the gene for the human ortholog of rat Pippin, the PMM1 gene for phosphomannomutase 1 (PMMH-22, yeast SEC53 ortholog), and two novel genes. Contains ESTs, STSs, GSSs and two putative CpG islands, complete sequence Length = 107818 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 agaggaggaagtatgcccag 101 |||||||||||||||||||| Sbjct: 64984 agaggaggaagtatgcccag 65003
>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16 Length = 346287 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 gccatgggcgaggccgacct 393 |||||||||||||||||||| Sbjct: 217167 gccatgggcgaggccgacct 217148
>emb|BX640422.1| Bordetella pertussis strain Tohama I, complete genome; segment 12/12 Length = 257701 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 gccatgggcgaggccgacct 393 |||||||||||||||||||| Sbjct: 215215 gccatgggcgaggccgacct 215196
>emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genome; segment 10/16 Length = 349981 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 ggccgacctcgatgccgcgg 404 |||||||||||||||||||| Sbjct: 173429 ggccgacctcgatgccgcgg 173448
>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome Length = 1010023 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 attaatctacttgaagaagt 63 |||||||||||||||||||| Sbjct: 781146 attaatctacttgaagaagt 781165
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 ggccgacctcgatgccgcgg 404 |||||||||||||||||||| Sbjct: 2979673 ggccgacctcgatgccgcgg 2979654
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 gcgaaggggccgacgaggag 370 |||||||||||||||||||| Sbjct: 18238013 gcgaaggggccgacgaggag 18238032
>gb|AY826885.1| Heterocapsa triquetra clone HTPSAL1 chloroplast photosystem I subunit XI mRNA, complete cds; nuclear gene for chloroplast product Length = 1197 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ggcgtgttgcggagcgggcc 343 |||||||||||||||||||| Sbjct: 911 ggcgtgttgcggagcgggcc 892
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 atgggcgaggccgacctcga 396 |||||||||||||||||||| Sbjct: 4350703 atgggcgaggccgacctcga 4350722
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 ggccgacctcgatgccgcgg 404 |||||||||||||||||||| Sbjct: 5407675 ggccgacctcgatgccgcgg 5407694
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 gcgaaggggccgacgaggag 370 |||||||||||||||||||| Sbjct: 18396910 gcgaaggggccgacgaggag 18396929
>gb|BC107646.1| Danio rerio zgc:123341, mRNA (cDNA clone MGC:123341 IMAGE:7413031), complete cds Length = 1067 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 tgaggcagacgctgaggatg 278 |||||||||||||||||||| Sbjct: 297 tgaggcagacgctgaggatg 316
>gb|AC022002.5| Homo sapiens chromosome 3 clone RP11-198P17 map 3p, complete sequence Length = 189097 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 tcgtacatgcatgccaccta 44 |||||||||||||||||||| Sbjct: 81350 tcgtacatgcatgccaccta 81369
>emb|AL928659.16| Mouse DNA sequence from clone RP23-271B13 on chromosome 2, complete sequence Length = 209560 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 aatctacttgaagaagtatg 66 |||||||||||||||||||| Sbjct: 121761 aatctacttgaagaagtatg 121780 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,549,520 Number of Sequences: 3902068 Number of extensions: 2549520 Number of successful extensions: 43356 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42402 Number of HSP's gapped (non-prelim): 953 length of query: 429 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 407 effective length of database: 17,147,199,772 effective search space: 6978910307204 effective search space used: 6978910307204 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
