ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags17b10 |
|---|---|
| Clone Library Name | barley_pub |
>Y410_SYNY3 (Q55116) Hypothetical protein sll0410| Length = 166 Score = 53.5 bits (127), Expect = 1e-07 Identities = 27/95 (28%), Positives = 51/95 (53%) Frame = +3 Query: 93 QDTQLRTDKFFQLEMTVHDSELDQYGVVHNAMYVVYIHKAREEMAASIGFSMTSIARTGN 272 Q+ + T+K+F++ + V D GVV + Y+ ++ AR E SIG + + G Sbjct: 23 QELEAVTEKWFEIMVRVQPHHTDYGGVVWHGTYLTWLETARVECLRSIGVDFADLVKLGC 82 Query: 273 AMAVLELNLKYFKPLLRGAKFVVKVRLVQIKGTRI 377 + V+ L L+Y + + G V+KV++ +I+ R+ Sbjct: 83 DLPVVSLALRYHRAIRLGQTAVIKVQMQEIQKVRL 117
>Y204_SYNY3 (Q55777) Hypothetical protein slr0204| Length = 138 Score = 37.0 bits (84), Expect = 0.011 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Frame = +3 Query: 123 FQLEMTVHDSELDQYGVVHNAMYVVYIHKAREEMAASIGFSMTSIARTGN-AMAVLELNL 299 F E V+ ++ D GVV+ ++ H+A E +S S+ +I G+ A+ ++ ++ Sbjct: 4 FTYERQVYLADTDGAGVVYFNQFLQMCHEAYESWLSSEHLSLQNIISVGDFALPLVHASI 63 Query: 300 KYFKPLLRGAKFVVKVRLVQIKGTRILVDHII 395 +F P G + +V + + Q R D+ I Sbjct: 64 DFFAPAHCGDRLLVNLTITQASAHRFCCDYEI 95
>CRH2_YEAST (P32623) Probable glycosidase CRH2 precursor (EC 3.2.-.-) (Congo| red hypersensitive protein 2) (Unknown transcript 2 protein) Length = 467 Score = 31.6 bits (70), Expect = 0.47 Identities = 21/47 (44%), Positives = 27/47 (57%) Frame = +1 Query: 70 SPTATSSAKTHS*GRTSSSNWR*QSMTASLTSMESFTMPCMSSTSTK 210 S TATSS+KT S +S+ S TAS +S S + SST+TK Sbjct: 361 SSTATSSSKTSSDHSSSTKKSSKTSSTASSSSSSSSSSSSSSSTATK 407
>ST18_MOUSE (Q80TY4) Suppression of tumorigenicity protein 18| Length = 1045 Score = 30.4 bits (67), Expect = 1.1 Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 9/119 (7%) Frame = +2 Query: 68 NLQRQHHRPRHTAKDGQVLPTGDDSP*QRA*PVWSRSQC---------HVCRLHPQSSRG 220 +L R+ +PR T +G+ + T SP P ++C HV L+P Sbjct: 332 HLARERRQPRVTDANGRQIFTNKHSPR----PERREAKCPIPGCDGTGHVTGLYPHHRSL 387 Query: 221 DGCEHWLQHDLHSTHRQRHGGLGAQPQVLQASPTRRQVCCQGEACPDKGHADTRRSHHR 397 GC H ++ L L VL+ C C +GH ++ R+ HR Sbjct: 388 SGCPHKVRVPLEI--------LAMHENVLK---------CPTPGCTGRGHVNSNRNTHR 429
>GARD_BACSU (P42240) Probable D-galactarate dehydratase (EC 4.2.1.42) (GalcD)| Length = 510 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/60 (36%), Positives = 28/60 (46%) Frame = -2 Query: 203 DVDDIHGIVNDSILVKLAVMDCHLQLEELVRP*LCVLADDVAVGDSLGASGESLHMAGPT 24 ++D+ IVND L K V C L LEE V V D+ GD + GE + A T Sbjct: 18 EIDNTAIIVNDGGLPKGTVFSCGLVLEEDVPQGHKVALTDLNQGDEIVRYGEVIGFADET 77
>IPPK_HUMAN (Q9H8X2) Inositol-pentakisphosphate 2-kinase (EC 2.7.1.-)| (Inositol-1,3,4,5,6-pentakisphosphate 2-kinase) (Ins(1,3,4,5,6)P5 2-kinase) (InsP5 2-kinase) (IPK1 homolog) Length = 491 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%) Frame = +2 Query: 281 GLGAQ-PQVLQASPTRRQVCCQGEACPDK 364 GLG Q P+V +ASP R + CQG+ P++ Sbjct: 284 GLGPQGPRVCEASPFSRSLRCQGKNTPER 312
>HTR1_HALSA (P33741) Sensory rhodopsin I transducer (HTR-I) (Methyl-accepting| phototaxis protein I) (MPP-I) Length = 535 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/31 (38%), Positives = 22/31 (70%) Frame = +3 Query: 39 VKALAARSQGISNGNIIGQDTQLRTDKFFQL 131 +K +AA+++ ++NGN+ + T RTD+F L Sbjct: 60 IKEIAAQTERVANGNLEQEVTSTRTDEFGSL 90
>CENPE_HUMAN (Q02224) Centromeric protein E (CENP-E protein)| Length = 2663 Score = 29.6 bits (65), Expect = 1.8 Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 12/117 (10%) Frame = +3 Query: 60 SQGISNGNIIGQDTQLRTDKFFQLEMTVHDSELDQYGVVHNAMYVVYIHKARE------- 218 +Q N ++ + TQL T+K +LE ++H++ + +H ++ + K E Sbjct: 2325 TQDNKNPHVTSRATQLTTEKIRELENSLHEA---KESAMHKESKIIKMQKELEVTNDIIA 2381 Query: 219 EMAASIGFSMTSIARTGNAMAVLE----LNLKYFKPLLRGAKF-VVKVRLVQIKGTR 374 ++ A + S + +T + VL+ L K +K + K +VK+ L ++K + Sbjct: 2382 KLQAKVHESNKCLEKTKETIQVLQDKVALGAKPYKEEIEDLKMKLVKIDLEKMKNAK 2438
>GP63_LEIAM (Q27673) Leishmanolysin precursor (EC 3.4.24.36) (Cell surface| protease) (Major surface glycoprotein) (Protein gp63) (Promastigote surface endopeptidase) (Major surface protease) Length = 597 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = +3 Query: 219 EMAASIGFSMTSIARTGNAMAVLELNLK-YFKPLLRGAKFVVKVR 350 EMA ++GFS T R G V ++ K YF P++ + V K R Sbjct: 264 EMAHALGFSGTFFDRVGIVQKVPDVRGKPYFTPMINSSTAVAKAR 308
>ST18_RAT (Q9QX27) Suppression of tumorigenicity protein 18 (Neural zinc| finger factor 3) (NZF-3) (C2-HC type zinc finger protein r-MyT3) Length = 1032 Score = 29.3 bits (64), Expect = 2.3 Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 9/124 (7%) Frame = +2 Query: 53 RSLPGNLQRQHHRPRHTAKDGQVLPTGDDSP*QRA*PVWSRSQC---------HVCRLHP 205 R L +L RQ +P+ T G+ + SP P ++C HV L+P Sbjct: 314 RFLLDHLARQRRQPKVTDASGRQIFNNKHSPR----PERREAKCPIPGCDGTGHVTGLYP 369 Query: 206 QSSRGDGCEHWLQHDLHSTHRQRHGGLGAQPQVLQASPTRRQVCCQGEACPDKGHADTRR 385 GC H ++ L L VL+ C C +GH ++ R Sbjct: 370 HHRSLSGCPHKVRVPLEI--------LAMHENVLK---------CPTPGCTGRGHVNSNR 412 Query: 386 SHHR 397 + HR Sbjct: 413 NTHR 416
>MUG2_MOUSE (P28666) Murinoglobulin-2 precursor (MuG2)| Length = 1451 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/47 (40%), Positives = 25/47 (53%) Frame = +3 Query: 237 GFSMTSIARTGNAMAVLELNLKYFKPLLRGAKFVVKVRLVQIKGTRI 377 G+ T I R N + L+ + +F+ G F VKVRLV IKG I Sbjct: 327 GYGTTKIERITNKLIFLKAD-SHFR---HGIPFFVKVRLVDIKGDPI 369
>INO80_GIBZE (Q4IL82) Putative DNA helicase INO80 (EC 3.6.1.-)| Length = 1904 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = +2 Query: 38 CEGSRRSLPGNLQRQHHRPRHTAKDGQVLPTG 133 CE R S P + R HH H +DG LP G Sbjct: 22 CEEDRDSRPHHHHRHHHHHHHHRRDGD-LPAG 52
>TSC10_NEUCR (Q7RZR2) 3-ketodihydrosphingosine reductase tsc-10 (EC 1.1.1.102)| (3-dehydrosphinganine reductase) (KDS reductase) Length = 969 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%) Frame = +2 Query: 185 HVCRLHPQSSRGDGCEHWL--QHDLHSTHRQRH 277 HV ++HPQ +H +HDLHS H Q+H Sbjct: 495 HVNQIHPQLQAQLQLQHQQAQEHDLHSHHLQQH 527
>A1I3_RAT (P14046) Alpha-1-inhibitor 3 precursor (Alpha-1-inhibitor III)| Length = 1477 Score = 28.5 bits (62), Expect = 4.0 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 1/102 (0%) Frame = +3 Query: 93 QDTQLRTDKFFQLEMTVHDSEL-DQYGVVHNAMYVVYIHKAREEMAASIGFSMTSIARTG 269 +D++L + E+ + + +L + Y +H A +V + G + RT Sbjct: 286 EDSRLDNNGCSTQEVNITEFQLKENYLKMHQAFHVNATVTEEGTGSEFSGSGRIEVERTR 345 Query: 270 NAMAVLELNLKYFKPLLRGAKFVVKVRLVQIKGTRILVDHII 395 N L+ + +F+ G F VKVRLV IKG I + ++ Sbjct: 346 NKFLFLKAD-SHFR---HGIPFFVKVRLVDIKGDPIPNEQVL 383
>SAS_DROME (Q04164) Putative epidermal cell surface receptor precursor| (Stranded at second protein) Length = 1693 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/30 (46%), Positives = 14/30 (46%) Frame = -1 Query: 213 ELCGCRRHTWHCERLHTGQARCHGLSSPVG 124 E C C R W CE RC GLS P G Sbjct: 553 ERCTCNRGDWMCE------PRCRGLSYPRG 576
>CAC1B_MOUSE (O55017) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2327 Score = 28.1 bits (61), Expect = 5.2 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 7/126 (5%) Frame = +2 Query: 41 EGSRRSLPGNLQRQHHRPRHTAKDGQVLPTGDDSP*QRA*PVWSRSQ-CHVCRLHPQSSR 217 EG+ + +L R+HHR R K P G + + +R + R H + + Sbjct: 837 EGTEATESADLPRRHHRHRDRDKTSATAPAGGEQDRTESTETGAREERARPRRSHSKETP 896 Query: 218 GDGCEHWLQHDLHSTHRQRHGGLGAQPQVLQASPTRRQVCCQGEACPDKGHADT------ 379 G + + +RH G+ + + P R + + +G A Sbjct: 897 GADTQ------VRCERSRRHHRRGSPEEATEREPRRHRAHRHAQDSSKEGTAPVLVPKGE 950 Query: 380 RRSHHR 397 RR+ HR Sbjct: 951 RRARHR 956
>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor| Length = 725 Score = 28.1 bits (61), Expect = 5.2 Identities = 21/61 (34%), Positives = 30/61 (49%) Frame = +1 Query: 31 PAM*RLSPLAPRESPTATSSAKTHS*GRTSSSNWR*QSMTASLTSMESFTMPCMSSTSTK 210 P LS + S T+TS + T TSSS+ S + S +S + T P +STS+ Sbjct: 181 PTTTSLSSTSTSPSSTSTSPSSTS----TSSSSTSTSSSSTSTSSSSTSTSPSSTSTSSS 236 Query: 211 L 213 L Sbjct: 237 L 237
>YJGM_ECOLI (P39337) Hypothetical acetyltransferase yjgM (EC 2.3.1.-)| Length = 167 Score = 28.1 bits (61), Expect = 5.2 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Frame = +3 Query: 138 TVHDSELDQ-YGVVHNAMYVVYIHKAREEMAASIGFSMTSIARTGNAMAVLELNLKYFKP 314 TV D LD+ Y V + ++ + E+ G + TG+ + EL YF P Sbjct: 42 TVADPNLDELYQVYSQPGHAYWVVEYEGEVVGGGGIAPL----TGSESDICELQKMYFLP 97 Query: 315 LLRGAKFVVKVRLVQIKGTR 374 +RG K+ L+ ++ R Sbjct: 98 AIRGKGLAKKLALMAMEQAR 117
>PPRB_MOUSE (Q925J9) Peroxisome proliferator-activated receptor-binding protein| (PBP) (PPAR-binding protein) (Thyroid hormone receptor-associated protein complex 220 kDa component) (Trap220) (Thyroid receptor-interacting protein 2) (TRIP-2) Length = 1575 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/49 (32%), Positives = 27/49 (55%) Frame = +1 Query: 52 PLAPRESPTATSSAKTHS*GRTSSSNWR*QSMTASLTSMESFTMPCMSS 198 P + +SP ++ S+ +H G +SSS + S +AS S+ T P +S Sbjct: 1219 PSSKAKSPISSGSSGSHVSGTSSSSGMKSSSGSASSGSVSQKTPPASNS 1267
>EDG8_HUMAN (Q9H228) Sphingosine 1-phosphate receptor Edg-8 (Endothelial| differentiation sphingolipid G-protein-coupled receptor 8) (Sphingosine 1-phosphate receptor 5) (S1P5) Length = 398 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = -1 Query: 69 FPGSERREPSHGGTDTNGESG 7 F GSER P G DT+G +G Sbjct: 360 FSGSERSSPQRDGLDTSGSTG 380
>CO4A1_MOUSE (P02463) Collagen alpha-1(IV) chain precursor| Length = 1669 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Frame = -1 Query: 162 GQARCHGLSSPVG-RTCPSLAVCLGR*CCRWRFPGSERREPSHGGTDTNGESG 7 G+ CHG+ G R P L +G FPG + E HG G++G Sbjct: 37 GKCDCHGVKGQKGERGLPGLQGVIG-------FPGMQGPEGPHGPPGQKGDAG 82
>Y1794_STRCO (Q9X9Z8) Hypothetical UPF0098 protein SCO1794| Length = 179 Score = 27.3 bits (59), Expect = 8.9 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Frame = +2 Query: 101 TAKDGQVLPTGDDSP*QR--A*PVWSRSQCHVCRLHPQSSRGDGCEHWLQHDLHSTHRQR 274 T KD QV G+ SP R P ++S C P + G G HW+ D+ ++ + Sbjct: 32 TLKDDQVHAAGNTSPHLRWEGFPAETKSFAVTC-YDPDAPTGSGFWHWVVFDIPASVTEL 90 Query: 275 HGGLGA 292 G G+ Sbjct: 91 PVGAGS 96
>FILA_HUMAN (P20930) Filaggrin| Length = 4061 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/69 (23%), Positives = 25/69 (36%) Frame = +2 Query: 170 SRSQCHVCRLHPQSSRGDGCEHWLQHDLHSTHRQRHGGLGAQPQVLQASPTRRQVCCQGE 349 S S+ H Q+ G H H L S RH G+G + + + Sbjct: 1984 SSSRGQAASSHEQARSSAGERHGSHHQLQSADSSRHSGIGHGQASSAVRDSGHRGYSGSQ 2043 Query: 350 ACPDKGHAD 376 A +GH++ Sbjct: 2044 ASDSEGHSE 2052
>POLG_TBEVS (P07720) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3412 Score = 27.3 bits (59), Expect = 8.9 Identities = 21/83 (25%), Positives = 34/83 (40%) Frame = +2 Query: 38 CEGSRRSLPGNLQRQHHRPRHTAKDGQVLPTGDDSP*QRA*PVWSRSQCHVCRLHPQSSR 217 C G+R ++ + ++ R T + G+V+P W C C L P + R Sbjct: 1057 CPGTRVTINADCDKRGASVRSTTESGKVIPE------------WC---CRTCTLPPVTFR 1101 Query: 218 GDGCEHWLQHDLHSTHRQRHGGL 286 G + W ++ H Q GGL Sbjct: 1102 -TGTDCWYAMEIRPVHDQ--GGL 1121
>MAGI2_RAT (O88382) Membrane-associated guanylate kinase, WW and PDZ| domain-containing protein 2 (Membrane-associated guanylate kinase inverted 2) (MAGI-2) (Atrophin-1-interacting protein 1) (Synaptic scaffolding molecule) (S-SCAM) Length = 1277 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +2 Query: 323 RRQVCCQGEACPDKGHADTRRSHH 394 RR+V C GE CP+ G + S H Sbjct: 859 RRKVLCGGEPCPENGRSPGSVSTH 882
>DHX9_XENLA (Q68FK8) ATP-dependent RNA helicase A-like protein (EC 3.6.1.-)| (Nuclear DNA helicase II) (NDH II) (DEAH box protein 9) Length = 1262 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Frame = +3 Query: 75 NGNIIGQDTQLRTDKFFQLEMTVHDSELDQYGVVHNAMYV----VYIHKAREEMAASIGF 242 +GN ++ + R ++FFQ E T + + Q G HN ++ +Y+ + ++ A Sbjct: 176 HGNWTLENAKARLNQFFQKEKTQGEYKYSQVGPDHNRSFIAEMTLYVKQLGRKIIAREHG 235 Query: 243 SMTSIARTGNAMAVL 287 S +A A++++ Sbjct: 236 SNKKLAAQSCALSIV 250
>MAGI2_MOUSE (Q9WVQ1) Membrane-associated guanylate kinase, WW and PDZ| domain-containing protein 2 (Membrane-associated guanylate kinase inverted 2) (MAGI-2) (Atrophin-1-interacting protein 1) (Activin receptor-interacting protein 1) (Acvrip1) Length = 1275 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +2 Query: 323 RRQVCCQGEACPDKGHADTRRSHH 394 RR+V C GE CP+ G + S H Sbjct: 858 RRKVLCGGEPCPENGRSPGSVSTH 881
>WSC2_YEAST (P53832) Cell wall integrity and stress response component 2| precursor Length = 503 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/47 (38%), Positives = 29/47 (61%) Frame = +1 Query: 67 ESPTATSSAKTHS*GRTSSSNWR*QSMTASLTSMESFTMPCMSSTST 207 ++ T+TSS+ THS +SSS+ + ++S T+ S + SSTST Sbjct: 152 DTKTSTSSSATHS---SSSSSTTSTTTSSSETTTSSSSSSSSSSTST 195
>CRSP3_HUMAN (Q9ULK4) CRSP complex subunit 3 (Cofactor required for Sp1| transcriptional activation subunit 3) (Transcriptional coactivator CRSP130) (Vitamin D3 receptor-interacting protein complex 130 kDa component) (DRIP130) (Activator-recruited cofactor Length = 1368 Score = 27.3 bits (59), Expect = 8.9 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = +2 Query: 230 EHWLQHDLHSTHRQRH 277 EHWLQ+D H+ H H Sbjct: 910 EHWLQNDWHTKHMNYH 925
>MAGI2_HUMAN (Q86UL8) Membrane-associated guanylate kinase, WW and PDZ| domain-containing protein 2 (Membrane-associated guanylate kinase inverted 2) (MAGI-2) (Atrophin-1-interacting protein 1) (Atrophin-1-interacting protein A) Length = 1455 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +2 Query: 323 RRQVCCQGEACPDKGHADTRRSHH 394 RR+V C GE CP+ G + S H Sbjct: 859 RRKVLCGGEPCPENGRSPGSVSTH 882
>COMM_DROME (Q24139) Protein commissureless| Length = 370 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/28 (39%), Positives = 14/28 (50%) Frame = +2 Query: 23 VSVPPCEGSRRSLPGNLQRQHHRPRHTA 106 + PPC LP + HH+PRH A Sbjct: 217 IESPPCYTIATGLPSYDEALHHQPRHFA 244 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,045,907 Number of Sequences: 219361 Number of extensions: 1132363 Number of successful extensions: 3472 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3331 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3470 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
