ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags17b08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1RR1_SPIOL (P29344) 30S ribosomal protein S1, chloroplast precurs... 232 8e-70
2RS1_SYNP6 (P46228) 30S ribosomal protein S1 145 1e-34
3RS1A_SYNY3 (P73530) 30S ribosomal protein S1 homolog A 143 4e-34
4RS1_SYNP7 (O33698) 30S ribosomal protein S1 86 7e-17
5RR1_PORPU (P51345) Chloroplast 30S ribosomal protein S1 84 3e-16
6RS1_LEULA (P50889) 40S ribosomal protein S1 77 3e-14
7RS1B_SYNY3 (P74142) 30S ribosomal protein S1 homolog B 77 4e-14
8RS1H_BACSU (P38494) 30S ribosomal protein S1 homolog 72 1e-12
9RS1_HAEIN (Q48082) 30S ribosomal protein S1 69 1e-11
10RS1H_BACC1 (O06000) 30S ribosomal protein S1 homolog 69 1e-11
11RS1_RHIME (P14129) 30S ribosomal protein S1 65 1e-10
12RS1_RHOPA (Q6NDP1) 30S ribosomal protein S1 (RRP-S1) 65 1e-10
13RS1_MYCLE (P46836) 30S ribosomal protein S1 64 4e-10
14RS1_MYCTU (O06147) 30S ribosomal protein S1 63 8e-10
15RS1_STAS1 (Q49XT0) 30S ribosomal protein S1 62 2e-09
16RS1_STAHJ (Q4L6I1) 30S ribosomal protein S1 61 2e-09
17RS1_BUCBP (Q89AJ3) 30S ribosomal protein S1 61 3e-09
18RS1_STAAN (Q7A5J0) 30S ribosomal protein S1 60 4e-09
19RS1_STAAM (Q99U14) 30S ribosomal protein S1 60 4e-09
20RS1_RICPR (Q9ZD28) 30S ribosomal protein S1 60 5e-09
21RS1_STAAW (Q8NWM8) 30S ribosomal protein S1 60 5e-09
22RS1_STAAS (Q6G987) 30S ribosomal protein S1 60 5e-09
23RS1_STAAR (Q6GGT5) 30S ribosomal protein S1 60 5e-09
24RS1_STAAC (Q5HFU7) 30S ribosomal protein S1 60 5e-09
25RS1_PROSP (P14128) 30S ribosomal protein S1 (Fragment) 60 5e-09
26RS1_SHIFL (P0AG70) 30S ribosomal protein S1 59 9e-09
27RS1_ECOLI (P0AG67) 30S ribosomal protein S1 59 9e-09
28RS1_ECOL6 (P0AG68) 30S ribosomal protein S1 59 9e-09
29RS1_ECO57 (P0AG69) 30S ribosomal protein S1 59 9e-09
30RS1_STAEQ (Q5HP69) 30S ribosomal protein S1 59 1e-08
31RS1_BUCAI (P57395) 30S ribosomal protein S1 56 7e-08
32RS1_BUCAP (Q44653) 30S ribosomal protein S1 56 1e-07
33RS1_CHLPN (Q9Z8M3) 30S ribosomal protein S1 54 3e-07
34RS1_CHLMU (P38016) 30S ribosomal protein S1 (70 kDa antigen) 51 3e-06
35RS1_CHLTR (O84100) 30S ribosomal protein S1 51 3e-06
36ISPH_CLOAB (Q97I09) 4-hydroxy-3-methylbut-2-enyl diphosphate red... 50 5e-06
37ISPH_CLOTE (Q895G2) 4-hydroxy-3-methylbut-2-enyl diphosphate red... 50 7e-06
38RS1_HELPJ (Q9ZKF6) 30S ribosomal protein S1 49 2e-05
39RS1_HELPY (P56008) 30S ribosomal protein S1 47 5e-05
40PNP_BUCBP (Q89AF8) Polyribonucleotide nucleotidyltransferase (EC... 42 0.001
41ISPH_FUSNN (Q8RI52) 4-hydroxy-3-methylbut-2-enyl diphosphate red... 42 0.002
42IF2A_METJA (Q57581) Translation initiation factor 2 alpha subuni... 40 0.006
43RPOE_SULAC (P39466) DNA-directed RNA polymerase subunit E (EC 2.... 39 0.016
44PNP_PHOLU (P41121) Polyribonucleotide nucleotidyltransferase (EC... 37 0.047
45PNP_BUCAP (Q8K9H5) Polyribonucleotide nucleotidyltransferase (EC... 37 0.047
46PNP_ECOLI (P05055) Polyribonucleotide nucleotidyltransferase (EC... 36 0.080
47PNP_BUCAI (P57454) Polyribonucleotide nucleotidyltransferase (EC... 36 0.080
48GS13_BACSU (P80870) General stress protein 13 (GSP13) 35 0.14
49PNP_HAEIN (P44584) Polyribonucleotide nucleotidyltransferase (EC... 34 0.30
50YHGF_NEIMB (Q51152) Hypothetical protein NMB0075 33 0.52
51YHGF_NEIMA (P57072) Hypothetical protein NMA0194 33 0.52
52IF2A_METKA (Q8TY86) Translation initiation factor 2 alpha subuni... 33 0.68
53Y568_HAEIN (P71353) Hypothetical protein HI0568 33 0.88
54RPOE1_METJA (Q57840) DNA-directed RNA polymerase subunit E' (EC ... 33 0.88
55PNP_YEREN (O34275) Polyribonucleotide nucleotidyltransferase (EC... 32 1.2
56YABR_BACSU (P37560) Hypothetical protein yabR 32 1.2
57IF2A_PYRKO (Q5JE49) Translation initiation factor 2 alpha subuni... 32 1.2
58RRP5_HUMAN (Q14690) RRP5 protein homolog (Programmed cell death ... 32 1.5
59IF2A_ARCFU (O29723) Translation initiation factor 2 alpha subuni... 32 1.5
60RRP5_YEAST (Q05022) rRNA biogenesis protein RRP5 32 2.0
61YHGF_ECOLI (P46837) Protein yhgF 31 2.6
62IF2A_AERPE (Q9YF02) Translation initiation factor 2 alpha subuni... 31 2.6
63RRP44_HUMAN (Q9Y2L1) Exosome complex exonuclease RRP44 (EC 3.1.1... 31 2.6
64IF2A_PYRFU (Q8U1R5) Translation initiation factor 2 alpha subuni... 31 2.6
65IF2A_SULSO (Q97Z79) Translation initiation factor 2 alpha subuni... 31 2.6
66VG05_BPT4 (P16009) Tail-associated lysozyme (EC 3.2.1.17) (Prote... 30 4.4
67TEX_BORPE (Q45388) Protein tex 30 7.5
68SYT_WIGBR (Q8D3C0) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threon... 30 7.5
69MAGC1_HUMAN (O60732) Melanoma-associated antigen C1 (MAGE-C1 ant... 29 9.8 
>RR1_SPIOL (P29344) 30S ribosomal protein S1, chloroplast precursor (CS1)|
          Length = 411

 Score =  232 bits (592), Expect(2) = 8e-70
 Identities = 118/178 (66%), Positives = 140/178 (78%)
 Frame = +2

Query: 8   EATAFLPIDEACLLDIDHIEEAGIRPGLVEQFMIIDENPNDETXXXXXXXXXXDLAWERC 187
           +++A+LP+ EAC+  I ++EEAGI PG+ E+F+II EN  D++          +LAWERC
Sbjct: 118 KSSAYLPLAEACIYRIKNVEEAGIIPGVREEFVIIGENEADDSLILSLRQIQYELAWERC 177

Query: 188 RQLQAEDXXXXXXXXXXXXXXXXALVEGLKAFVPFSQVSSKTTAEELLDKELPLKFVEVD 367
           RQLQAED                ALVEGL+ FVPFSQ+SSK++AEELL+KE+PLKFVEVD
Sbjct: 178 RQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFVEVD 237

Query: 368 EEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHD 541
           EEQ RLV+SNRKAMADSQAQLGIGSVV GTV+SLKPYGAFIDIGGINGLLHVSQISHD
Sbjct: 238 EEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHD 295



 Score = 51.6 bits (122), Expect(2) = 8e-70
 Identities = 24/26 (92%), Positives = 26/26 (100%)
 Frame = +3

Query: 543 RVADISTVLQPGDTLKVMILSHDRER 620
           RV+DI+TVLQPGDTLKVMILSHDRER
Sbjct: 296 RVSDIATVLQPGDTLKVMILSHDRER 321
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>RS1_SYNP6 (P46228) 30S ribosomal protein S1|
          Length = 306

 Score =  145 bits (365), Expect = 1e-34
 Identities = 73/179 (40%), Positives = 109/179 (60%), Gaps = 1/179 (0%)
 Frame = +2

Query: 8   EATAFLPIDEACLLDIDHIEEAGIRPGLVEQFMIIDENPNDETXXXXXXXXXXDLAWERC 187
           +  AFLP+ E  +  ++  EE  ++P  + +F I+ +   D              AWER 
Sbjct: 53  KTAAFLPVQEMSINRVESPEEV-LQPSEMREFFILSDENEDGQLTLSIRRIEYMRAWERV 111

Query: 188 RQLQAEDXXXXXXXXXXXXXXXXALVEGLKAFVPFSQVSSKTTAEELLDKELPLKFVEVD 367
           RQLQ ED                  +EGL+ F+P S +S++   E+L+ +ELPLKF+EVD
Sbjct: 112 RQLQTEDATVRSEVFATNRGGALVRIEGLRGFIPGSHISTRKAKEDLVGEELPLKFLEVD 171

Query: 368 EEQGRLVLSNRKAMADSQA-QLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHD 541
           E++ RLVLS+R+A+ + +  +L +G VV+G V  +KPYGAFIDIGG++GLLH+S+ISHD
Sbjct: 172 EDRNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHD 230



 Score = 29.3 bits (64), Expect(2) = 0.80
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +2

Query: 437 GSVVLGTVESLKPYGAFIDIG 499
           G  V+GTV +L+P GA IDIG
Sbjct: 31  GDTVVGTVFNLEPRGALIDIG 51



 Score = 22.3 bits (46), Expect(2) = 0.80
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 492 ISVESMDFCMSAKLVMTRVADISTVLQPGDTLKVMILSHDRE 617
           I  ++  F    ++ + RV     VLQP +  +  ILS + E
Sbjct: 50  IGAKTAAFLPVQEMSINRVESPEEVLQPSEMREFFILSDENE 91
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>RS1A_SYNY3 (P73530) 30S ribosomal protein S1 homolog A|
          Length = 328

 Score =  143 bits (361), Expect = 4e-34
 Identities = 73/179 (40%), Positives = 108/179 (60%), Gaps = 1/179 (0%)
 Frame = +2

Query: 8   EATAFLPIDEACLLDIDHIEEAGIRPGLVEQFMIIDENPNDETXXXXXXXXXXDLAWERC 187
           +  A++PI E  +  +D  EE  ++P    +F I+ +   D              AWER 
Sbjct: 53  KTAAYIPIQEMSINRVDDPEEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERV 111

Query: 188 RQLQAEDXXXXXXXXXXXXXXXXALVEGLKAFVPFSQVSSKTTAEELLDKELPLKFVEVD 367
           RQLQAED                  +EGL+ F+P S +S++   E+L+ ++LPLKF+EVD
Sbjct: 112 RQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISAREAKEDLVGEDLPLKFLEVD 171

Query: 368 EEQGRLVLSNRKAMADSQAQ-LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHD 541
           EE+ RLVLS+R+A+ + +   L +  VV+G+V  +KPYGAFIDIGG++GLLH+S+ISHD
Sbjct: 172 EERNRLVLSHRRALVERKMNGLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHD 230
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>RS1_SYNP7 (O33698) 30S ribosomal protein S1|
          Length = 295

 Score = 86.3 bits (212), Expect = 7e-17
 Identities = 55/177 (31%), Positives = 87/177 (49%), Gaps = 1/177 (0%)
 Frame = +2

Query: 8   EATAFLPIDEACLLDIDHIEEAGIRPGLVEQFMIIDENPNDETXXXXXXXXXXDLAWERC 187
           +A AFLP  EA L  +  +E A +      +F++I +   D            + AW R 
Sbjct: 50  KAPAFLPKREAALHAVLDLE-AHLPKDEELEFLVIRDQNEDGQVTVSLRALALEQAWTRV 108

Query: 188 RQLQAEDXXXXXXXXXXXXXXXXALVEGLKAFVPFSQVSSKTTAEELLDKELPLKFVEVD 367
            +LQ                   A +EGL+AF+P S ++ K   + L  K L + F+EV+
Sbjct: 109 AELQEGGQTVQVKVTGSNKGGVTADLEGLRAFIPRSHLNEKEDLDSLKGKTLTVAFLEVN 168

Query: 368 EEQGRLVLSNRKAMADSQA-QLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQIS 535
               +LVLS R+A   +   ++ +G ++ G V  LKP+G F+D+GG   LL ++QIS
Sbjct: 169 RADKKLVLSERQAARTALVREIEVGQLINGKVTGLKPFGVFVDLGGATALLPINQIS 225
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>RR1_PORPU (P51345) Chloroplast 30S ribosomal protein S1|
          Length = 263

 Score = 84.0 bits (206), Expect = 3e-16
 Identities = 49/176 (27%), Positives = 87/176 (49%), Gaps = 2/176 (1%)
 Frame = +2

Query: 14  TAFLPIDEACL-LDIDHIEEAGIRPGLVEQFMIIDENPNDETXXXXXXXXXXDLAWERCR 190
           +A+LPI E     ++++     I      +F ++D N                 AW+R R
Sbjct: 51  SAYLPIQEVSSNQELNNFNSLNIND--TREFFLLDYNVESRQLILSIRRLEYIRAWKRIR 108

Query: 191 QLQAEDXXXXXXXXXXXXXXXXALVEGLKAFVPFSQVSSKTTAEELLDKELPLKFVEVDE 370
           QL AED                  +EG+  FVP S +++ +      +K + LK + V+E
Sbjct: 109 QLLAEDSLLDVRIKGFNKGGMIVNLEGISGFVPNSHLNNFSKNTSSTNKFIKLKLLNVEE 168

Query: 371 EQGRLVLSNRKAM-ADSQAQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQIS 535
           +   L+LS+R+A+ A + + L +G+++ G +  + PYG FI  G + GL+H+S+I+
Sbjct: 169 KSNNLILSHRRALIAQASSNLIVGNIIEGVINQITPYGLFIKAGNLKGLVHISEIN 224
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>RS1_LEULA (P50889) 40S ribosomal protein S1|
          Length = 429

 Score = 77.4 bits (189), Expect = 3e-14
 Identities = 41/104 (39%), Positives = 67/104 (64%), Gaps = 11/104 (10%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQ----- 421
           V G++ FVP S V+ +  ++  +  +K++  + +E+D    RL+LS RKA+A  +     
Sbjct: 163 VNGVRGFVPASMVAERFVSDLNQFKNKDIKAQVIEIDPANARLILS-RKAVAAQELAAQL 221

Query: 422 ----AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHD 541
               ++L +G VV GTV  L  +GAF+D+GG++GL+HVS+ISHD
Sbjct: 222 AEVFSKLSVGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHD 265



 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 6/98 (6%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSKTTAEELLDKE-LPLKFVEVDEEQGRLVLS----NRKAMADSQAQ 427
           V+GL      S    K  A+ L   + + +K + +D E+GR+ LS     R    ++  Q
Sbjct: 253 VDGLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQ 312

Query: 428 LGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISH 538
           +  GSV+ GTV+ +K +GAF++I  GI GL+HVSQIS+
Sbjct: 313 IAAGSVLEGTVKRVKDFGAFVEILPGIEGLVHVSQISN 350
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>RS1B_SYNY3 (P74142) 30S ribosomal protein S1 homolog B|
          Length = 305

 Score = 77.0 bits (188), Expect = 4e-14
 Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 1/177 (0%)
 Frame = +2

Query: 8   EATAFLPIDEACLLDIDHIEEAGIRPGLVEQFMIIDENPNDETXXXXXXXXXXDLAWERC 187
           ++  F+P+ E  L     IE++       + F++  E  ++              +WE  
Sbjct: 51  KSPGFVPVQELGLRPHAEIEDSFPLDSAWD-FLVTSEQNDEGQVRLSRRQLQIQQSWENL 109

Query: 188 RQLQAEDXXXXXXXXXXXXXXXXALVEGLKAFVPFSQVSSKTTAEELLDKELPLKFVEVD 367
            +L+                     VEGL+ F+P S +  K   + L+ + L    +E +
Sbjct: 110 AELEESGKTLEMVVTGTNKGGVVGDVEGLRGFIPRSHLMHKDNMDALVGQVLKAHILEAN 169

Query: 368 EEQGRLVLSNRKAM-ADSQAQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQIS 535
           ++  +LVL+ R+   A+S  ++  G++  G V  ++PYG F++I G+ GLLHVSQ+S
Sbjct: 170 QDNNKLVLTQRRIQQAESMGKIAAGNIYEGKVAKIQPYGVFVEIEGVTGLLHVSQVS 226
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>RS1H_BACSU (P38494) 30S ribosomal protein S1 homolog|
          Length = 382

 Score = 72.4 bits (176), Expect = 1e-12
 Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 10/185 (5%)
 Frame = +2

Query: 14  TAFLPIDEACLLDIDHIEEAGIRPGLVEQFMIIDENPNDETXXXXXXXXXXDLAWERCRQ 193
           +  +PI E   L   H+E+A     + ++  +      D+           D AWE   +
Sbjct: 41  SGIIPISELSSL---HVEKASDVVKVDDELDLKVTKVEDDALILSKRAVDADRAWEDLEK 97

Query: 194 LQAEDXXXXXXXXXXXXXXXXALVEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVD 367
            + E                  +  G++ F+P S V +    +  +   K L L  VE+D
Sbjct: 98  -KFETKEVFEAEVKDVVKGGLVVDIGVRGFIPASLVEAHFVEDFTDYKGKTLSLLVVELD 156

Query: 368 EEQGRLVLSNRKAMADSQAQ--------LGIGSVVLGTVESLKPYGAFIDIGGINGLLHV 523
            ++ R++LS+R  +   QA         L +GSV+ G V+ L  +GAF+DIGGI+GL+H+
Sbjct: 157 RDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDFGAFVDIGGIDGLVHI 216

Query: 524 SQISH 538
           SQ+SH
Sbjct: 217 SQLSH 221



 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 32/101 (31%), Positives = 58/101 (57%), Gaps = 9/101 (8%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSKTTAE--ELLDK--ELPLKFVEVDEEQGRLVLSNRKAMADSQAQL 430
           + G+   V  SQ+S     +  +++++  E+ +K + VD +  R+ LS +  +     Q+
Sbjct: 207 IGGIDGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIKDTLPGPWNQI 266

Query: 431 GI----GSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISH 538
           G     G V+ GTV+ L  +GAF++I  G+ GL+H+SQIS+
Sbjct: 267 GEKVKPGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISN 307
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>RS1_HAEIN (Q48082) 30S ribosomal protein S1|
          Length = 549

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 36/101 (35%), Positives = 63/101 (62%), Gaps = 10/101 (9%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSKTT--AEELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQ--- 427
           + G++AF+P S V ++    A+ LL KEL  K +++D+++  +V+S R  +    +Q   
Sbjct: 124 LNGVRAFLPGSLVDTRPAREADHLLGKELEFKVIKLDQKRNNVVVSRRAVIESENSQERE 183

Query: 428 -----LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQIS 535
                L  GS V G V++L  YGAF+D+GG++GLLH++ ++
Sbjct: 184 QVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDGLLHITDMA 224



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
 Frame = +2

Query: 356 VEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDI-GGINGLLH 520
           +E+DEE+ R+ L  ++  A+   Q       G  V G ++S+  +G FI + GGI+GL+H
Sbjct: 333 LEIDEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIKSITDFGIFIGLEGGIDGLVH 392

Query: 521 VSQIS 535
           +S IS
Sbjct: 393 LSDIS 397
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>RS1H_BACC1 (O06000) 30S ribosomal protein S1 homolog|
          Length = 382

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 38/101 (37%), Positives = 63/101 (62%), Gaps = 10/101 (9%)
 Frame = +2

Query: 269 GLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMA---DSQAQLG 433
           G++ F+P S V      +  +   K L +K VE+D E+ R++LS++  +    DS+ +  
Sbjct: 123 GVRGFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEA 182

Query: 434 I-----GSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHD 541
           I     G VV GTV+ L  +GAF+++GG++GL+H+SQISH+
Sbjct: 183 ISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHE 223



 Score = 42.7 bits (99), Expect = 9e-04
 Identities = 31/101 (30%), Positives = 57/101 (56%), Gaps = 9/101 (8%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSKTTAE--ELLDK--ELPLKFVEVDEEQGRLVLSNRKAMA----DS 418
           V G+   V  SQ+S +   +  E+L++  ++ +K + VD +  R+ LS + A      + 
Sbjct: 208 VGGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENI 267

Query: 419 QAQLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISH 538
             ++  G +  G V+ L  +GAF++I  G+ GL+HVSQI++
Sbjct: 268 AGEVKAGDIREGIVKRLVTFGAFVEILPGVEGLVHVSQIAN 308
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>RS1_RHIME (P14129) 30S ribosomal protein S1|
          Length = 568

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 35/101 (34%), Positives = 62/101 (61%), Gaps = 10/101 (9%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQ--- 427
           ++G  AF+P SQV  +   +   L+    P + +++D+ +G +V+S R  + +S+A+   
Sbjct: 130 LDGAVAFLPRSQVDIRPIRDVTPLMHNPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRS 189

Query: 428 -----LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQIS 535
                L  G VV G V+++  YGAF+D+GGI+GLLHV+ ++
Sbjct: 190 EIVQNLEEGQVVEGVVKNITDYGAFVDLGGIDGLLHVTDMA 230



 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 20/74 (27%), Positives = 46/74 (62%), Gaps = 5/74 (6%)
 Frame = +2

Query: 329 LDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQLG----IGSVVLGTVESLKPYGAFIDI 496
           + +++ ++ + +++E  R+ L  ++  +D    +G    +G  + GTV ++  YGAF+++
Sbjct: 243 IGQQVKVQIIRINQETHRISLGMKQLESDPWDGIGAKYPVGKKISGTVTNITDYGAFVEL 302

Query: 497 -GGINGLLHVSQIS 535
             GI GL+H+S++S
Sbjct: 303 EPGIEGLIHISEMS 316
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>RS1_RHOPA (Q6NDP1) 30S ribosomal protein S1 (RRP-S1)|
          Length = 565

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 34/101 (33%), Positives = 62/101 (61%), Gaps = 10/101 (9%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQ--- 427
           ++G  AF+P SQV  +   +   L++   P + +++D  +G +V+S R  + +++A+   
Sbjct: 133 LDGAVAFLPRSQVDIRPIRDVAPLMNNSQPFQILKMDRRRGNIVVSRRTVLEETRAEQRQ 192

Query: 428 -----LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQIS 535
                L  G V+ G V+++  YGAF+D+GGI+GLLHV+ I+
Sbjct: 193 ELVQNLEEGQVIDGVVKNITDYGAFVDLGGIDGLLHVTDIA 233



 Score = 38.5 bits (88), Expect = 0.016
 Identities = 20/74 (27%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
 Frame = +2

Query: 329 LDKELPLKFVEVDEEQGRLVLSNRKAMADS----QAQLGIGSVVLGTVESLKPYGAFIDI 496
           + + + +K ++++ E  R+ L  ++ + D     +A+  + +   G V ++  YGAF+++
Sbjct: 246 IGQTVKVKIIKINHETHRISLGMKQLLDDPWQGIEAKYPLNARFTGRVTNITDYGAFVEL 305

Query: 497 G-GINGLLHVSQIS 535
             GI GL+HVS++S
Sbjct: 306 EPGIEGLIHVSEMS 319
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>RS1_MYCLE (P46836) 30S ribosomal protein S1|
          Length = 481

 Score = 63.9 bits (154), Expect = 4e-10
 Identities = 34/99 (34%), Positives = 59/99 (59%), Gaps = 10/99 (10%)
 Frame = +2

Query: 269 GLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA------ 424
           GL+ F+P S V  +   +    + KE+  K +E+D+ +  +VLS R  +  +Q+      
Sbjct: 143 GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEF 202

Query: 425 --QLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQIS 535
             QL  G++  G V S+  +GAF+D+GG++GL+HVS++S
Sbjct: 203 LNQLQKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELS 241



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
 Frame = +2

Query: 338 ELPLKFVEVDEEQGRLVLSNRKAMADSQAQLG----IGSVVLGTVESLKPYGAFIDI-GG 502
           E+ ++ ++VD ++ R+ LS +    D          IG +V G V  L P+GAF+ +  G
Sbjct: 257 EVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 316

Query: 503 INGLLHVSQIS 535
           I GL+H+S+++
Sbjct: 317 IEGLVHISELA 327
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>RS1_MYCTU (O06147) 30S ribosomal protein S1|
          Length = 481

 Score = 62.8 bits (151), Expect = 8e-10
 Identities = 33/99 (33%), Positives = 59/99 (59%), Gaps = 10/99 (10%)
 Frame = +2

Query: 269 GLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQ----- 427
           GL+ F+P S V  +   +    + KE+  K +E+D+ +  +VLS R  +  +Q++     
Sbjct: 143 GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEF 202

Query: 428 ---LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQIS 535
              L  G++  G V S+  +GAF+D+GG++GL+HVS++S
Sbjct: 203 LNNLQKGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSELS 241



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
 Frame = +2

Query: 338 ELPLKFVEVDEEQGRLVLSNRKAMADSQAQLG----IGSVVLGTVESLKPYGAFIDI-GG 502
           E+ ++ ++VD ++ R+ LS +    D          IG +V G V  L P+GAF+ +  G
Sbjct: 257 EVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 316

Query: 503 INGLLHVSQIS 535
           I GL+H+S+++
Sbjct: 317 IEGLVHISELA 327
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>RS1_STAS1 (Q49XT0) 30S ribosomal protein S1|
          Length = 393

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 11/102 (10%)
 Frame = +2

Query: 269 GLKAFVPFSQVSSKTTAEELLDKE---LPLKFVEVDEEQGRLVLSNRKAMADSQAQ---- 427
           G + FVP S +S+    E+  D E   L LK  E+D    R++LS +   A   A+    
Sbjct: 128 GQRGFVPASLISTDFI-EDFSDFEGQVLKLKVEELDPANNRVILSRKAVEALENAEKKDE 186

Query: 428 ----LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHD 541
               L  G V+ G V  L  +GAF+DIGG++GL+HVS++SH+
Sbjct: 187 LLESLNEGDVIEGKVARLTNFGAFVDIGGVDGLVHVSELSHE 228



 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
 Frame = +2

Query: 347 LKFVEVDEEQGRLVLSNRKAMADS----QAQLGIGSVVLGTVESLKPYGAFIDIG-GING 511
           +K   VD++  R+ LS +  +       + +   G V+ GTV  L  +GAF++I  G+ G
Sbjct: 245 VKIKSVDKDSERISLSIKDTLPSPFESIKGEFNEGDVIEGTVVRLANFGAFVEIKPGVQG 304

Query: 512 LLHVSQISH 538
           L+H+S+ISH
Sbjct: 305 LVHISEISH 313
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>RS1_STAHJ (Q4L6I1) 30S ribosomal protein S1|
          Length = 392

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 11/102 (10%)
 Frame = +2

Query: 269 GLKAFVPFSQVSSKTTAE-ELLDKE-LPLKFVEVDEEQGRLVLSNRKAMADSQ------- 421
           G + FVP S +S+    +  + D + + +K  E+D E  R++LS RKA+  ++       
Sbjct: 128 GQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQAENDVKKAS 186

Query: 422 --AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHD 541
               L  G V+ G V  L  +GAF+DIGG++GL+HVS++SH+
Sbjct: 187 LLESLNAGDVIKGKVARLTNFGAFVDIGGVDGLVHVSELSHE 228



 Score = 39.3 bits (90), Expect = 0.009
 Identities = 27/102 (26%), Positives = 56/102 (54%), Gaps = 9/102 (8%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSK--TTAEELLD--KELPLKFVEVDEEQGRLVLSNRKAMADS---- 418
           + G+   V  S++S +   + E+++   +E+ +K   V+++  R+ LS +  +       
Sbjct: 213 IGGVDGLVHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDTLPTPFESI 272

Query: 419 QAQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHD 541
           + Q     V+ G V  L  +GAF++I  G+ GL+H+S+I+H+
Sbjct: 273 KGQFHEDDVIEGKVVRLANFGAFVEIAPGVQGLVHISEIAHE 314
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>RS1_BUCBP (Q89AJ3) 30S ribosomal protein S1|
          Length = 566

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 35/102 (34%), Positives = 63/102 (61%), Gaps = 11/102 (10%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQ--- 427
           +E ++AF+P S V  +   E   L  KEL  K +++D+++  +V+S R+A+ +S+     
Sbjct: 124 LEDIRAFLPGSLVDIRPVRETMHLEGKELEFKVIKLDQKRNNVVVS-RRAVIESEYNAER 182

Query: 428 ------LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQIS 535
                 L  G +V G V++L  YGAF+D+GG++GLLH++ ++
Sbjct: 183 NLLLETLQEGLIVSGIVKNLTDYGAFVDLGGVDGLLHITDMA 224
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>RS1_STAAN (Q7A5J0) 30S ribosomal protein S1|
          Length = 391

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 11/102 (10%)
 Frame = +2

Query: 269 GLKAFVPFSQVSSKTTAE-ELLDKE-LPLKFVEVDEEQGRLVLSNRKAMADSQ------- 421
           G + FVP S +S+    +  + D + + +K  E+D E  R++LS RKA+   +       
Sbjct: 128 GQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQ 186

Query: 422 --AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHD 541
               L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+
Sbjct: 187 LLQSLNEGDVIHGKVARLTQFGAFIDIGGVDGLVHVSELSHE 228



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 9/101 (8%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSK--TTAEELLD--KELPLKFVEVDEEQGRLVLSNRKAMA----DS 418
           + G+   V  S++S +   T EE++   +++ +K   +D +  R+ LS +  +     + 
Sbjct: 213 IGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENI 272

Query: 419 QAQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISH 538
           + Q     V+ G V  L  +GAF++I  G+ GL+H+S+I+H
Sbjct: 273 KGQFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAH 313
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>RS1_STAAM (Q99U14) 30S ribosomal protein S1|
          Length = 391

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 11/102 (10%)
 Frame = +2

Query: 269 GLKAFVPFSQVSSKTTAE-ELLDKE-LPLKFVEVDEEQGRLVLSNRKAMADSQ------- 421
           G + FVP S +S+    +  + D + + +K  E+D E  R++LS RKA+   +       
Sbjct: 128 GQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQ 186

Query: 422 --AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHD 541
               L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+
Sbjct: 187 LLQSLNEGDVIHGKVARLTQFGAFIDIGGVDGLVHVSELSHE 228



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 9/101 (8%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSK--TTAEELLD--KELPLKFVEVDEEQGRLVLSNRKAMA----DS 418
           + G+   V  S++S +   T EE++   +++ +K   +D +  R+ LS +  +     + 
Sbjct: 213 IGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENI 272

Query: 419 QAQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISH 538
           + Q     V+ G V  L  +GAF++I  G+ GL+H+S+I+H
Sbjct: 273 KGQFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAH 313
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>RS1_RICPR (Q9ZD28) 30S ribosomal protein S1|
          Length = 568

 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 32/101 (31%), Positives = 62/101 (61%), Gaps = 10/101 (9%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQ--- 427
           + G+ AF+P SQV  +   +   +++ + P K + +D++ G +V+S R  + +S+++   
Sbjct: 137 LSGVVAFLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRVILEESRSEARD 196

Query: 428 -----LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQIS 535
                +  G V+ G V+++  YGAFID+G ++GLLH++ IS
Sbjct: 197 EMLSKIKEGIVLEGVVKNITDYGAFIDLGSVDGLLHLTDIS 237
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>RS1_STAAW (Q8NWM8) 30S ribosomal protein S1|
          Length = 391

 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 11/102 (10%)
 Frame = +2

Query: 269 GLKAFVPFSQVSSKTTAE-ELLDKE-LPLKFVEVDEEQGRLVLSNRKAMADSQ------- 421
           G + FVP S +S+    +  + D + + +K  E+D E  R++LS RKA+   +       
Sbjct: 128 GQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQ 186

Query: 422 --AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHD 541
               L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+
Sbjct: 187 LLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHE 228



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 9/101 (8%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSK--TTAEELLD--KELPLKFVEVDEEQGRLVLSNRKAMA----DS 418
           + G+   V  S++S +   T EE++   +++ +K   +D +  R+ LS +  +     + 
Sbjct: 213 IGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENI 272

Query: 419 QAQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISH 538
           + Q     V+ G V  L  +GAF++I  G+ GL+H+S+I+H
Sbjct: 273 KGQFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAH 313
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>RS1_STAAS (Q6G987) 30S ribosomal protein S1|
          Length = 391

 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 11/102 (10%)
 Frame = +2

Query: 269 GLKAFVPFSQVSSKTTAE-ELLDKE-LPLKFVEVDEEQGRLVLSNRKAMADSQ------- 421
           G + FVP S +S+    +  + D + + +K  E+D E  R++LS RKA+   +       
Sbjct: 128 GQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQ 186

Query: 422 --AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHD 541
               L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+
Sbjct: 187 LLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHE 228



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 9/101 (8%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSK--TTAEELLD--KELPLKFVEVDEEQGRLVLSNRKAMA----DS 418
           + G+   V  S++S +   T EE++   +++ +K   +D +  R+ LS +  +     + 
Sbjct: 213 IGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENI 272

Query: 419 QAQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISH 538
           + Q     V+ G V  L  +GAF++I  G+ GL+H+S+I+H
Sbjct: 273 KGQFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAH 313
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>RS1_STAAR (Q6GGT5) 30S ribosomal protein S1|
          Length = 391

 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 11/102 (10%)
 Frame = +2

Query: 269 GLKAFVPFSQVSSKTTAE-ELLDKE-LPLKFVEVDEEQGRLVLSNRKAMADSQ------- 421
           G + FVP S +S+    +  + D + + +K  E+D E  R++LS RKA+   +       
Sbjct: 128 GQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQ 186

Query: 422 --AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHD 541
               L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+
Sbjct: 187 LLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHE 228



 Score = 39.7 bits (91), Expect = 0.007
 Identities = 27/101 (26%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSK--TTAEELLD--KELPLKFVEVDEEQGRLVLSNRKAMA----DS 418
           + G+   V  S++S +   T EE++   +++ +K   +D +  R+ LS +  +     + 
Sbjct: 213 IGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENI 272

Query: 419 QAQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISH 538
           + Q      + G V  L  +GAF++I  G+ GL+H+S+I+H
Sbjct: 273 KGQFHENDDIEGVVVRLANFGAFVEIAPGVQGLVHISEIAH 313
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>RS1_STAAC (Q5HFU7) 30S ribosomal protein S1|
          Length = 391

 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 11/102 (10%)
 Frame = +2

Query: 269 GLKAFVPFSQVSSKTTAE-ELLDKE-LPLKFVEVDEEQGRLVLSNRKAMADSQ------- 421
           G + FVP S +S+    +  + D + + +K  E+D E  R++LS RKA+   +       
Sbjct: 128 GQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQ 186

Query: 422 --AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHD 541
               L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+
Sbjct: 187 LLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHE 228



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 9/101 (8%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSK--TTAEELLD--KELPLKFVEVDEEQGRLVLSNRKAMA----DS 418
           + G+   V  S++S +   T EE++   +++ +K   +D +  R+ LS +  +     + 
Sbjct: 213 IGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENI 272

Query: 419 QAQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISH 538
           + Q     V+ G V  L  +GAF++I  G+ GL+H+S+I+H
Sbjct: 273 KGQFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAH 313
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>RS1_PROSP (P14128) 30S ribosomal protein S1 (Fragment)|
          Length = 378

 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 34/101 (33%), Positives = 62/101 (61%), Gaps = 10/101 (9%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAM-ADSQAQ-- 427
           + G++AF+P S V  +   +   L  KEL  K +++D+++  +V+S R  + ++S A+  
Sbjct: 19  LNGIRAFLPGSLVDVRPVRDTTHLEGKELEFKVIKLDQKRNNVVVSRRAVIESESSAERD 78

Query: 428 -----LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQIS 535
                L  G  V G V++L  YGAF+D+GG++GLLH++ ++
Sbjct: 79  QLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMA 119



 Score = 38.1 bits (87), Expect = 0.021
 Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
 Frame = +2

Query: 356 VEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDI-GGINGLLH 520
           +++DEE+ R+ L  ++  ++   Q       G  V G ++S+  +G FI + GGI+GL+H
Sbjct: 228 LDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGLEGGIDGLVH 287

Query: 521 VSQIS 535
           +S IS
Sbjct: 288 LSDIS 292
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>RS1_SHIFL (P0AG70) 30S ribosomal protein S1|
          Length = 557

 Score = 59.3 bits (142), Expect = 9e-09
 Identities = 32/101 (31%), Positives = 58/101 (57%), Gaps = 10/101 (9%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA---- 424
           + G++AF+P S V  +   +   L  KEL  K +++D+++  +V+S R  +    +    
Sbjct: 124 LNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERD 183

Query: 425 ----QLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQIS 535
                L  G  V G V++L  YGAF+D+GG++GLLH++ ++
Sbjct: 184 QLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMA 224



 Score = 39.3 bits (90), Expect = 0.009
 Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
 Frame = +2

Query: 356 VEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDI-GGINGLLH 520
           +++DEE+ R+ L  ++  A+   Q       G  V G ++S+  +G FI + GGI+GL+H
Sbjct: 333 LDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVH 392

Query: 521 VSQIS 535
           +S IS
Sbjct: 393 LSDIS 397
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>RS1_ECOLI (P0AG67) 30S ribosomal protein S1|
          Length = 557

 Score = 59.3 bits (142), Expect = 9e-09
 Identities = 32/101 (31%), Positives = 58/101 (57%), Gaps = 10/101 (9%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA---- 424
           + G++AF+P S V  +   +   L  KEL  K +++D+++  +V+S R  +    +    
Sbjct: 124 LNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERD 183

Query: 425 ----QLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQIS 535
                L  G  V G V++L  YGAF+D+GG++GLLH++ ++
Sbjct: 184 QLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMA 224



 Score = 39.3 bits (90), Expect = 0.009
 Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
 Frame = +2

Query: 356 VEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDI-GGINGLLH 520
           +++DEE+ R+ L  ++  A+   Q       G  V G ++S+  +G FI + GGI+GL+H
Sbjct: 333 LDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVH 392

Query: 521 VSQIS 535
           +S IS
Sbjct: 393 LSDIS 397
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>RS1_ECOL6 (P0AG68) 30S ribosomal protein S1|
          Length = 557

 Score = 59.3 bits (142), Expect = 9e-09
 Identities = 32/101 (31%), Positives = 58/101 (57%), Gaps = 10/101 (9%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA---- 424
           + G++AF+P S V  +   +   L  KEL  K +++D+++  +V+S R  +    +    
Sbjct: 124 LNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERD 183

Query: 425 ----QLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQIS 535
                L  G  V G V++L  YGAF+D+GG++GLLH++ ++
Sbjct: 184 QLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMA 224



 Score = 39.3 bits (90), Expect = 0.009
 Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
 Frame = +2

Query: 356 VEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDI-GGINGLLH 520
           +++DEE+ R+ L  ++  A+   Q       G  V G ++S+  +G FI + GGI+GL+H
Sbjct: 333 LDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVH 392

Query: 521 VSQIS 535
           +S IS
Sbjct: 393 LSDIS 397
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>RS1_ECO57 (P0AG69) 30S ribosomal protein S1|
          Length = 557

 Score = 59.3 bits (142), Expect = 9e-09
 Identities = 32/101 (31%), Positives = 58/101 (57%), Gaps = 10/101 (9%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA---- 424
           + G++AF+P S V  +   +   L  KEL  K +++D+++  +V+S R  +    +    
Sbjct: 124 LNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERD 183

Query: 425 ----QLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQIS 535
                L  G  V G V++L  YGAF+D+GG++GLLH++ ++
Sbjct: 184 QLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMA 224



 Score = 39.3 bits (90), Expect = 0.009
 Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
 Frame = +2

Query: 356 VEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDI-GGINGLLH 520
           +++DEE+ R+ L  ++  A+   Q       G  V G ++S+  +G FI + GGI+GL+H
Sbjct: 333 LDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVH 392

Query: 521 VSQIS 535
           +S IS
Sbjct: 393 LSDIS 397
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>RS1_STAEQ (Q5HP69) 30S ribosomal protein S1|
          Length = 392

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 11/102 (10%)
 Frame = +2

Query: 269 GLKAFVPFSQVSSKTTAE-ELLDKE-LPLKFVEVDEEQGRLVLSNRKAM---------AD 415
           G + FVP S +S+    +  + D + + +K  E+D E  R++LS RKA+         A 
Sbjct: 128 GQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQLENDAKKAS 186

Query: 416 SQAQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHD 541
               L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+
Sbjct: 187 ILDSLNEGDVIDGKVARLTNFGAFIDIGGVDGLVHVSELSHE 228



 Score = 37.7 bits (86), Expect = 0.027
 Identities = 27/101 (26%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSK--TTAEELLD--KELPLKFVEVDEEQGRLVLSNRKAMA----DS 418
           + G+   V  S++S +   T EE++   + + +K   V+++  R+ LS +  +     + 
Sbjct: 213 IGGVDGLVHVSELSHEHVQTPEEVVSVGEAVKVKVKSVEKDSERISLSIKDTLPTPFENI 272

Query: 419 QAQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISH 538
           + +     V+ GTV  L  +GAF++I   + GL+H+S+I H
Sbjct: 273 KGKFHEDDVIEGTVVRLANFGAFVEIAPSVQGLVHISEIDH 313
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>RS1_BUCAI (P57395) 30S ribosomal protein S1|
          Length = 558

 Score = 56.2 bits (134), Expect = 7e-08
 Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 10/98 (10%)
 Frame = +2

Query: 272 LKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA------- 424
           ++AF+P S V  +   +   L  KEL  K +++D+++  +V+S R  +    +       
Sbjct: 127 IRAFLPGSLVDVRPVRDTIHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLL 186

Query: 425 -QLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQIS 535
             L  G  V G V++L  YGAF+D+GG++GLLH++ ++
Sbjct: 187 ENLQEGMHVKGIVKNLTDYGAFVDLGGVDGLLHITDMA 224



 Score = 38.1 bits (87), Expect = 0.021
 Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
 Frame = +2

Query: 356 VEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDI-GGINGLLH 520
           +++DEE+ R+ L  ++   +   +       G  VLG ++S+  +G FI + GGI+GL+H
Sbjct: 333 LDIDEERRRISLGLKQCKINPWKEFSETHKKGVHVLGKIKSITDFGIFIGLNGGIDGLVH 392

Query: 521 VSQIS 535
           +S IS
Sbjct: 393 LSDIS 397
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>RS1_BUCAP (Q44653) 30S ribosomal protein S1|
          Length = 559

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 10/98 (10%)
 Frame = +2

Query: 272 LKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA------- 424
           ++AF+P S V  +   +   L  KEL  K +++D+++  +V+S R  +    +       
Sbjct: 127 IRAFLPGSLVDVRPVRDTIHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLL 186

Query: 425 -QLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQIS 535
             L  G  + G V++L  YGAF+D+GG++GLLH++ ++
Sbjct: 187 ESLQEGIEIKGIVKNLTDYGAFVDLGGVDGLLHITDMA 224



 Score = 35.8 bits (81), Expect = 0.10
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
 Frame = +2

Query: 356 VEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDI-GGINGLLH 520
           +++DEE+ R+ L  ++   +   +       G  V G ++S+  +G FI + GGI+GL+H
Sbjct: 333 LDIDEERRRISLGLKQCKINPWQEFSETHKKGIHVSGKIKSITDFGIFIGLKGGIDGLVH 392

Query: 521 VSQIS 535
           +S IS
Sbjct: 393 LSDIS 397
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>RS1_CHLPN (Q9Z8M3) 30S ribosomal protein S1|
          Length = 580

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 28/99 (28%), Positives = 58/99 (58%), Gaps = 10/99 (10%)
 Frame = +2

Query: 269 GLKAFVPFSQVSSKT--TAEELLDKELPLKFVEVDEEQGRLVLSNRKAM--------ADS 418
           G++AF+P SQ+ +K     ++ + K    K ++++ E+  +V+S R+ +        A+ 
Sbjct: 154 GMEAFLPGSQIDNKKIKNLDDYVGKVCEFKILKINVERRNIVVSRRELLEAERISKKAEL 213

Query: 419 QAQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQIS 535
             Q+ IG    G V+++  +G F+D+ GI+GLLH++ ++
Sbjct: 214 IEQISIGEYRKGVVKNITDFGVFLDLDGIDGLLHITDMT 252



 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 5/74 (6%)
 Frame = +2

Query: 329 LDKELPLKFVEVDEEQGRLVLSNRKA----MADSQAQLGIGSVVLGTVESLKPYGAFIDI 496
           L++EL +  + VD+E+GR+ L  ++       D + +   G  VLG +  L PYGAFI+I
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYPPGKRVLGKIVKLLPYGAFIEI 324

Query: 497 -GGINGLLHVSQIS 535
             GI GL+H+S++S
Sbjct: 325 EEGIEGLIHISEMS 338



 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSKTTAEELLDKELPLKFV--EVDEEQGRLVLSNRKAMADS----QA 424
           +EGL      S +   +   EL  K   ++ V   VD+E  ++ L  ++  ++     +A
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLGVKQLSSNPWNEIEA 474

Query: 425 QLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDPCCRYLD 562
               G+V+ G V  +  +GAF+++  GI GL+HVS++S  P  +  D
Sbjct: 475 MFPAGTVISGVVTKITAFGAFVELQNGIEGLIHVSELSDKPFAKIED 521



 Score = 38.1 bits (87), Expect = 0.021
 Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSKTTAEELLDK--ELPLKFVEVDEEQGRLVL----SNRKAMADSQA 424
           +EGL      S V +     E+++K  E+    + + +++G++ L    + R    + + 
Sbjct: 328 IEGLIHISEMSWVKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTERNPWDNIEE 387

Query: 425 QLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQIS 535
           +  IG  V   +++L  YGAF+++  GI GL+H+S +S
Sbjct: 388 KYPIGLHVNAEIKNLTNYGAFVELEPGIEGLIHISDMS 425



 Score = 31.6 bits (70), Expect = 2.0
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
 Frame = +2

Query: 326 LLDKELPLKFVEVDEEQGRLVLSNRKAMADSQ-----AQLGIGSVVLGTVESLKPYGAFI 490
           +L  E+ +   + ++E+G++VLS  KA    Q     A    GS+V G +      G  +
Sbjct: 92  VLGAEVEVYLDQAEDEEGKVVLSREKATRQRQWEYILAHCEEGSIVKGQITRKVKGGLIV 151

Query: 491 DIGGINGLLHVSQISH 538
           DI G+   L  SQI +
Sbjct: 152 DI-GMEAFLPGSQIDN 166
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>RS1_CHLMU (P38016) 30S ribosomal protein S1 (70 kDa antigen)|
          Length = 570

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 27/99 (27%), Positives = 58/99 (58%), Gaps = 10/99 (10%)
 Frame = +2

Query: 269 GLKAFVPFSQVSSKT--TAEELLDKELPLKFVEVDEEQGRLVLSNRKAM--------ADS 418
           G++AF+P SQ+ +K     ++ + K    K ++++ ++  +V+S R+ +        A+ 
Sbjct: 154 GMEAFLPGSQIDNKKIKNLDDYVGKVCEFKILKINVDRRNVVVSRRELLEAERISKKAEL 213

Query: 419 QAQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQIS 535
             Q+ IG    G V+++  +G F+D+ GI+GLLH++ ++
Sbjct: 214 IEQITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMT 252



 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
 Frame = +2

Query: 329 LDKELPLKFVEVDEEQGRLVLSNRKA----MADSQAQLGIGSVVLGTVESLKPYGAFIDI 496
           L++EL +  + VD+E+GR+ L  ++       D + +   G  V G +  L PYGAFI+I
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYPPGKRVRGKIVKLLPYGAFIEI 324

Query: 497 -GGINGLLHVSQIS 535
             GI GL+HVS++S
Sbjct: 325 EEGIEGLIHVSEMS 338



 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSKTTAEELLDKELPLKFV--EVDEEQGRLVLSNRKAMADS----QA 424
           +EGL      S +   +   EL  K   ++ V   VD+E  ++ L  ++   +     +A
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEIEA 474

Query: 425 QLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDPCCRYLD 562
              +GS + G V  +  +GAF+++  GI GL+HVS++S  P  +  D
Sbjct: 475 MFPVGSDISGIVTKITAFGAFVELQNGIEGLIHVSKLSDKPFAKIED 521



 Score = 37.7 bits (86), Expect(2) = 0.005
 Identities = 25/98 (25%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSKTTAEELLDK--ELPLKFVEVDEEQGRLVLSNRKAMADS----QA 424
           +EGL      S V +     E+++K  E+ +  + + +++G++ L  ++   +     + 
Sbjct: 328 IEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTEHNPWDNIEE 387

Query: 425 QLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQIS 535
           +  IG  V   +++L  YGAF+++  GI GL+H+S +S
Sbjct: 388 KYPIGLRVTAEIKNLTNYGAFVELEPGIEGLIHISDMS 425



 Score = 30.4 bits (67), Expect = 4.4
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
 Frame = +2

Query: 338 ELPLKFVEVDEEQGRLVLSNRKAMADSQ-----AQLGIGSVVLGTVESLKPYGAFIDIGG 502
           E+ +   + ++E+G++VLS  KA    Q     A    GS+V G +      G  +DI G
Sbjct: 96  EVEVYLDQTEDEEGKVVLSREKATRQRQWEYILAHCEEGSIVKGQITRKVKGGLIVDI-G 154

Query: 503 INGLLHVSQISH 538
           +   L  SQI +
Sbjct: 155 MEAFLPGSQIDN 166



 Score = 21.6 bits (44), Expect(2) = 0.005
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +3

Query: 543 RVADISTVLQPGDTLKVMILSHDRE 617
           +V+  S + + G+T++ +ILS D+E
Sbjct: 429 KVSHPSELFKKGNTVEAVILSVDKE 453
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>RS1_CHLTR (O84100) 30S ribosomal protein S1|
          Length = 569

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 27/99 (27%), Positives = 58/99 (58%), Gaps = 10/99 (10%)
 Frame = +2

Query: 269 GLKAFVPFSQVSSKT--TAEELLDKELPLKFVEVDEEQGRLVLSNRKAM--------ADS 418
           G++AF+P SQ+ +K     ++ + K    K ++++ ++  +V+S R+ +        A+ 
Sbjct: 154 GMEAFLPGSQIDNKKIKNLDDYVGKVCEFKILKINVDRRNVVVSRRELLEAERISKKAEL 213

Query: 419 QAQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQIS 535
             Q+ IG    G V+++  +G F+D+ GI+GLLH++ ++
Sbjct: 214 IEQITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMT 252



 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
 Frame = +2

Query: 329 LDKELPLKFVEVDEEQGRLVLSNRKA----MADSQAQLGIGSVVLGTVESLKPYGAFIDI 496
           L++EL +  + VD+E+GR+ L  ++       D + +   G  V G +  L PYGAFI+I
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYPPGKRVRGKIVKLLPYGAFIEI 324

Query: 497 -GGINGLLHVSQIS 535
             GI GL+HVS++S
Sbjct: 325 EEGIEGLIHVSEMS 338



 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSKTTAEELLDKELPLKFV--EVDEEQGRLVLSNRKAMADS----QA 424
           +EGL      S +   +   EL  K   ++ V   VD+E  ++ L  ++   +     + 
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEIEV 474

Query: 425 QLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDPCCRYLD 562
              +GS + G V  +  +GAF+++  GI GL+HVS++S  P  +  D
Sbjct: 475 MFPVGSDISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIED 521



 Score = 38.1 bits (87), Expect(2) = 0.004
 Identities = 25/98 (25%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSKTTAEELLDK--ELPLKFVEVDEEQGRLVLSNRKAMADS----QA 424
           +EGL      S V +     E+++K  E+ +  + + +++G++ L  ++   +     + 
Sbjct: 328 IEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEE 387

Query: 425 QLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQIS 535
           +  IG  V   +++L  YGAF+++  GI GL+H+S +S
Sbjct: 388 KYPIGLRVTAEIKNLTNYGAFVELEPGIEGLIHISDMS 425



 Score = 21.6 bits (44), Expect(2) = 0.004
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +3

Query: 543 RVADISTVLQPGDTLKVMILSHDRE 617
           +V+  S + + G+T++ +ILS D+E
Sbjct: 429 KVSHPSELFKKGNTVEAVILSVDKE 453
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>ISPH_CLOAB (Q97I09) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 642

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 12/105 (11%)
 Frame = +2

Query: 257 ALVEGLKAFVPFSQVS--SKTTAEELLDKELPLKFVEVD--EEQGRLVLSNRKAMADSQA 424
           A  +G++ F+P S V        +E + K   +  +E    + Q ++V S R  ++  + 
Sbjct: 412 ASYKGIRIFIPASHVELFHVDNLKEYIGKSFDVAIIEYSTKKRQTKIVASRRALLSKEKE 471

Query: 425 Q--------LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQIS 535
           +        L  G VV G V+ L  +GAF++I G++GLLHVS+IS
Sbjct: 472 KVEETVWNKLEEGQVVEGEVKRLTDFGAFVEIEGVDGLLHVSEIS 516



 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 9/101 (8%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVS----SKTTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADS---- 418
           +EG+   +  S++S     K      +  ++ +  + VD+E  +L LS +K   +     
Sbjct: 503 IEGVDGLLHVSEISWGRVEKPADVLKIGDKIKVYVLSVDKENKKLSLSVKKLTENPWNNV 562

Query: 419 QAQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISH 538
           + +  +GSVVLG V     +GAF+ +  G++GL+H+S+ISH
Sbjct: 563 EEKYPVGSVVLGKVIRFADFGAFVKLEPGVDGLVHISEISH 603
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>ISPH_CLOTE (Q895G2) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 635

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
 Frame = +2

Query: 359 EVDEEQGRLVLS----NRKAMADSQAQLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHV 523
           ++D+++ +L LS     +    D + +  +G++VLGTV     +GAF+++  G++GL+H+
Sbjct: 531 DIDKDKKKLALSIKDLTKDPWKDVEVKYPVGNIVLGTVVRFASFGAFVELEPGVDGLIHI 590

Query: 524 SQISHDPCCRYLDSSS 571
           SQISH    R  D  S
Sbjct: 591 SQISHKRVDRVEDELS 606



 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 12/100 (12%)
 Frame = +2

Query: 272 LKAFVPFSQVSSKTTAEELLDK--ELPLKFVEVDEEQG--RLVLSNRKAMADSQAQ---- 427
           ++ F+P S V  +   +  + K  EL +  +E +E +   R+V S R  + + Q++    
Sbjct: 409 VRVFIPASHVELRHVDDLSIYKGCELTVNIIEFEEGRNNTRIVASRRDLLKEEQSKVEEE 468

Query: 428 ----LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQIS 535
               L   ++  G V  L  +GAF++I G++GLLHVS+IS
Sbjct: 469 TWSSLEKDTIKEGEVRRLTDFGAFVNINGVDGLLHVSEIS 508
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>RS1_HELPJ (Q9ZKF6) 30S ribosomal protein S1|
          Length = 552

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 9/101 (8%)
 Frame = +2

Query: 266 EGLKAFVPFSQVSSK--TTAEELLDK--ELPLKFVEVDEEQGRLVLSNRKAMADS----Q 421
           +G+   V +S++S K     E+   +  E+ +K +  DEE+ RL LS +  + D     Q
Sbjct: 220 KGIDGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKRRLSLSIKATIEDPWEEIQ 279

Query: 422 AQLGIGSVVLGTVESLKPYGAFIDIGG-INGLLHVSQISHD 541
            +L  G  +   V +++ YG F+DIG  I G LHVS+IS D
Sbjct: 280 DKLKPGYAIKVVVSNIEHYGVFVDIGNDIEGFLHVSEISWD 320



 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
 Frame = +2

Query: 266 EGLKAFVPFSQVSSKTTAEELLDKELPLKFVEVDEEQGRLVLSNRKAM-ADSQAQLGIGS 442
           +G++ F+  S  S K  A  +  K +    + VD+E   + +S ++    + + QL I  
Sbjct: 136 QGVEYFLSRSHSSLKNDANHI-GKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEISK 194

Query: 443 V-------VLGTVESLKPYGAFIDIGGINGLLHVSQISH 538
                   VLG V  + P+G F+   GI+GL+H S+ISH
Sbjct: 195 ELLEATEPVLGVVRQITPFGIFVKFKGIDGLVHYSEISH 233



 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 22/68 (32%), Positives = 44/68 (64%), Gaps = 6/68 (8%)
 Frame = +2

Query: 335 KELPLKFVEVDEEQGRLVLSNRKA------MADSQAQLGIGSVVLGTVESLKPYGAFIDI 496
           +E+ +K +++D +  RL +S ++       + +S+ Q  +G +V G V +L  +GAF+++
Sbjct: 334 QEIDVKIIDIDPKNRRLRVSLKQLTNRPFDVFESKHQ--VGDIVEGKVATLTDFGAFLNL 391

Query: 497 GGINGLLH 520
           GG++GLLH
Sbjct: 392 GGVDGLLH 399
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>RS1_HELPY (P56008) 30S ribosomal protein S1|
          Length = 556

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 9/101 (8%)
 Frame = +2

Query: 266 EGLKAFVPFSQVSSK--TTAEELLDK--ELPLKFVEVDEEQGRLVLSNRKAMADS----Q 421
           +G++  V +S++S K     E+   +  E+ +K +  D E+ RL LS +  + D     Q
Sbjct: 224 KGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSLSIKATIEDPWEEIQ 283

Query: 422 AQLGIGSVVLGTVESLKPYGAFIDIGG-INGLLHVSQISHD 541
            +L  G  +   V +++ YG F+DIG  I G LHVS+IS D
Sbjct: 284 DKLKPGYAIKVVVSNIEHYGVFVDIGNDIEGFLHVSEISWD 324



 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
 Frame = +2

Query: 266 EGLKAFVPFSQVSSKTTAEELLDKELPLKFVEVDEEQGRLVLS--------NRKAMADSQ 421
           +G++ F+  S  S K  A  +  K +    + VD+E   + +S        +++ +  S+
Sbjct: 140 QGVEYFLSRSHSSLKNDANHI-GKRVKACIIRVDKENHSINISRKRFFEVNDKRQLEVSK 198

Query: 422 AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISH 538
             L     VLG V  + P+G F++  GI GL+H S+ISH
Sbjct: 199 ELLEATEPVLGVVRQITPFGIFVEAKGIEGLVHYSEISH 237



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 22/68 (32%), Positives = 44/68 (64%), Gaps = 6/68 (8%)
 Frame = +2

Query: 335 KELPLKFVEVDEEQGRLVLSNRKA------MADSQAQLGIGSVVLGTVESLKPYGAFIDI 496
           +E+ +K +++D +  RL +S ++       + +S+ Q  +G V+ G V +L  +GAF+++
Sbjct: 338 QEIDVKIIDIDPKNRRLRVSLKQLTNRPFDVFESKHQ--VGDVLEGKVATLTDFGAFLNL 395

Query: 497 GGINGLLH 520
           GG++GLLH
Sbjct: 396 GGVDGLLH 403
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>PNP_BUCBP (Q89AF8) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 693

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
 Frame = +2

Query: 311 TTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFI 490
           TT E  ++ +  +K   V +E+ +  +   K +    A++ +GSV  G V  +  +GAF+
Sbjct: 585 TTIE--IEDDGTVKISAVMQEKAKCAIQRIKEIT---AEVEVGSVYTGKVTRIVDFGAFV 639

Query: 491 DIG-GINGLLHVSQISH 538
            IG G  GL+H+SQI+H
Sbjct: 640 SIGIGKEGLVHISQIAH 656
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>ISPH_FUSNN (Q8RI52) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 827

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
 Frame = +2

Query: 263 VEGLKAFVPFSQVSSKTTAEELLDK-----ELPLKFVEVDEEQGRLVLSNRKAMADSQAQ 427
           +  LK F+  S+VS K   ++L D      ++    V +DE +  + LS +K   D  A 
Sbjct: 496 INTLKGFIHISEVSWKRL-DKLSDNYKVGDKIKAVVVSLDEAKRNVKLSIKKLEEDPWAT 554

Query: 428 LG----IGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQIS 535
           +     +   + G V  + PYGAF++I  G+ GL+H+S  S
Sbjct: 555 VANEFKVDDEIEGIVTKVLPYGAFVEIKPGVEGLVHISDFS 595



 Score = 30.4 bits (67), Expect = 4.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 422 AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQIS 535
           A L +G +V   V  +  +G  +DI  + G +H+S++S
Sbjct: 472 AGLAVGQIVDCVVTEVLDFGLAVDINTLKGFIHISEVS 509
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>IF2A_METJA (Q57581) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 266

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 15/36 (41%), Positives = 28/36 (77%), Gaps = 3/36 (8%)
 Frame = +2

Query: 437 GSVVLGTVESLKPYGAFIDI---GGINGLLHVSQIS 535
           G +V+GTV+ +KPYGAF+++    G  G++H+S+++
Sbjct: 12  GDIVIGTVKDVKPYGAFVELLEYPGKEGMIHISEVT 47
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>RPOE_SULAC (P39466) DNA-directed RNA polymerase subunit E (EC 2.7.7.6)|
          Length = 183

 Score = 38.5 bits (88), Expect = 0.016
 Identities = 21/57 (36%), Positives = 32/57 (56%)
 Frame = +2

Query: 434 IGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDPCCRYLDSSSTRGYSQGYDSK 604
           I  V+ G V  +  YG ++++G ++GL+H+SQI+ D     L   S RG   G  SK
Sbjct: 81  IHEVIEGEVSQVDNYGVYVNMGPVDGLVHISQITDD----NLKFDSNRGILIGEKSK 133
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>PNP_PHOLU (P41121) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase) (CAP87K)
          Length = 709

 Score = 37.0 bits (84), Expect = 0.047
 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
 Frame = +2

Query: 311 TTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFI 490
           TT E  ++ +  +K    D E+ +  +S    + +  A++ +G +  G V  +  +GAF+
Sbjct: 585 TTIE--IEDDGTVKIAATDGEKAKHAISR---IEEITAEIEVGRIYAGKVTRIVDFGAFV 639

Query: 491 DI-GGINGLLHVSQIS 535
            I GG  GL+H+SQI+
Sbjct: 640 AIGGGKEGLVHISQIA 655
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>PNP_BUCAP (Q8K9H5) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 707

 Score = 37.0 bits (84), Expect = 0.047
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +2

Query: 422 AQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISH 538
           A++ +G +  G V  +  +GAFI IG G  GL+H+SQIS+
Sbjct: 617 AEIEVGRIYSGKVTRIVDFGAFISIGIGKEGLVHISQISN 656
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>PNP_ECOLI (P05055) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 711

 Score = 36.2 bits (82), Expect = 0.080
 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
 Frame = +2

Query: 311 TTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFI 490
           TT E  ++ +  +K    D E+ +  +   + + +  A++ +G V  G V  +  +GAF+
Sbjct: 585 TTIE--IEDDGTVKIAATDGEKAKHAI---RRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639

Query: 491 DI-GGINGLLHVSQIS 535
            I GG  GL+H+SQI+
Sbjct: 640 AIGGGKEGLVHISQIA 655
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>PNP_BUCAI (P57454) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 707

 Score = 36.2 bits (82), Expect = 0.080
 Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +2

Query: 422 AQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQIS 535
           A++ +G +  G V  +  +GAF+ IG G  GL+H+SQIS
Sbjct: 617 AEIEVGRIYSGKVTRIVDFGAFVSIGLGKEGLVHISQIS 655
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>GS13_BACSU (P80870) General stress protein 13 (GSP13)|
          Length = 129

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +2

Query: 422 AQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISH 538
           A+  +GSV  G V  L+ YGAF+ +     GL+H+S+++H
Sbjct: 2   AKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTH 41
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>PNP_HAEIN (P44584) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 709

 Score = 34.3 bits (77), Expect = 0.30
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +2

Query: 329 LDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFIDI-GGI 505
           +D +  +K   VD    + V+   + +    A++  G +  G V  L  +GAF+ I G  
Sbjct: 588 IDDDGTVKIAAVDSNAAKNVMGRIEEIV---AEVEAGVIYKGKVTRLADFGAFVAIVGNK 644

Query: 506 NGLLHVSQISHD 541
            GL+H+SQI+ +
Sbjct: 645 EGLVHISQIAEE 656
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>YHGF_NEIMB (Q51152) Hypothetical protein NMB0075|
          Length = 757

 Score = 33.5 bits (75), Expect = 0.52
 Identities = 15/40 (37%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
 Frame = +2

Query: 422 AQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISH 538
           + L +G ++ G V ++  +GAF+DIG   +GL+H+S +S+
Sbjct: 635 SDLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSN 674
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>YHGF_NEIMA (P57072) Hypothetical protein NMA0194|
          Length = 757

 Score = 33.5 bits (75), Expect = 0.52
 Identities = 15/40 (37%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
 Frame = +2

Query: 422 AQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISH 538
           + L +G ++ G V ++  +GAF+DIG   +GL+H+S +S+
Sbjct: 635 SDLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSN 674
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>IF2A_METKA (Q8TY86) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 267

 Score = 33.1 bits (74), Expect = 0.68
 Identities = 12/36 (33%), Positives = 26/36 (72%), Gaps = 3/36 (8%)
 Frame = +2

Query: 437 GSVVLGTVESLKPYGAFIDIG---GINGLLHVSQIS 535
           G +V+ TVE ++ +GAF+ +    G++G +H+S+++
Sbjct: 12  GEIVMATVERVEDHGAFVTLDEYPGVDGYIHISEVA 47
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>Y568_HAEIN (P71353) Hypothetical protein HI0568|
          Length = 762

 Score = 32.7 bits (73), Expect = 0.88
 Identities = 15/34 (44%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
 Frame = +2

Query: 437 GSVVLGTVESLKPYGAFIDIG-GINGLLHVSQIS 535
           G ++ GTV ++  +GAF+DIG   +GL+H+S +S
Sbjct: 651 GMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLS 684
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>RPOE1_METJA (Q57840) DNA-directed RNA polymerase subunit E' (EC 2.7.7.6)|
          Length = 187

 Score = 32.7 bits (73), Expect = 0.88
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +2

Query: 443 VVLGTVESLKPYGAFIDIGGINGLLHVSQISHD 541
           ++ G V  +  +G+F+ +G ++GL+HVSQI  D
Sbjct: 84  LIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDD 116
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>PNP_YEREN (O34275) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 706

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +2

Query: 422 AQLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQIS 535
           A++ +  +  G V  +  +GAF+ I GG  GL+H+SQI+
Sbjct: 617 AEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIA 655
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>YABR_BACSU (P37560) Hypothetical protein yabR|
          Length = 128

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 12/35 (34%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = +2

Query: 434 IGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQIS 535
           +GS + G +  +  +GAF+++ GG  GL+H+S+++
Sbjct: 5   VGSKLQGKITGITNFGAFVELPGGSTGLVHISEVA 39
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>IF2A_PYRKO (Q5JE49) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 275

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +2

Query: 437 GSVVLGTVESLKPYGAFIDIG---GINGLLHVSQIS 535
           G  V+ TV+++ PYGAF+ +    G  G +H+S+++
Sbjct: 12  GEFVVATVKNIHPYGAFLTLDEYPGKEGFMHISEVA 47
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>RRP5_HUMAN (Q14690) RRP5 protein homolog (Programmed cell death protein 11)|
          Length = 1871

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 428  LGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHD 541
            L IG +V GTV+S+KP    + +  GI G +H S I  D
Sbjct: 1033 LSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDD 1071
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>IF2A_ARCFU (O29723) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 267

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 17/66 (25%)
 Frame = +2

Query: 437 GSVVLGTVESLKPYGAFIDIG---GINGLLHVSQIS--------------HDPCCRYLDS 565
           G +V+GTV+ +  +GAF+ +    G  G++H+S+++                  C+ LD 
Sbjct: 17  GEIVIGTVKRVLDFGAFVSLDEYEGREGMVHISEVASGWIKDIREHVKKGQKVICKVLDV 76

Query: 566 SSTRGY 583
           +  RG+
Sbjct: 77  NPKRGH 82
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>RRP5_YEAST (Q05022) rRNA biogenesis protein RRP5|
          Length = 1729

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 24/102 (23%), Positives = 53/102 (51%), Gaps = 14/102 (13%)
 Frame = +2

Query: 272  LKAFVPFSQVSSKTTAEELLDKELPLKFV----EVDEEQGRLVLSNRKA-------MADS 418
            ++AFVP S++S  +  +E      P+++V       +E  R+ L+ R++       +  +
Sbjct: 1200 VEAFVPVSKLSD-SYLKEWKKFYKPMQYVLGKVVTCDEDSRISLTLRESEINGDLKVLKT 1258

Query: 419  QAQLGIGSVVLGTVESLKPYGAFIDIG---GINGLLHVSQIS 535
             + +  G V  GT++S+  +G F+ +     + GL H+++I+
Sbjct: 1259 YSDIKAGDVFEGTIKSVTDFGVFVKLDNTVNVTGLAHITEIA 1300
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>YHGF_ECOLI (P46837) Protein yhgF|
          Length = 773

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 14/35 (40%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = +2

Query: 437 GSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISH 538
           G ++ G V ++  +GAF+DIG   +GL+H+S +S+
Sbjct: 651 GMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSN 685
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>IF2A_AERPE (Q9YF02) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 277

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = +2

Query: 386 VLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFI---DIGGINGLLHVSQIS 535
           +L  RK + D      +G +V+GTV+ +  YGA++   + GG+   L  S+I+
Sbjct: 11  LLKPRKPLPD------VGEIVVGTVQEVHDYGAYLILDEYGGVRAFLPWSEIA 57
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>RRP44_HUMAN (Q9Y2L1) Exosome complex exonuclease RRP44 (EC 3.1.13.-) (Ribosomal|
           RNA-processing protein 44) (DIS3 protein homolog)
          Length = 958

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 11/132 (8%)
 Frame = +2

Query: 179 ERCRQLQAEDXXXXXXXXXXXXXXXXALVEGLKAFVPFSQVSSKTTAEELLDKELPLKFV 358
           E  +++ A++                A+ EG+ AF     V S T   EL+D+   L   
Sbjct: 158 EHLKKMSADNQLQVIFITNDRRNKEKAIEEGIPAFTCEEYVKSLTANPELIDRLACLSEE 217

Query: 359 EVDEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKP--YGAFIDIGGIN-------- 508
             + E G+++ S    ++  Q  +  G+ + GT  + +     A + I G N        
Sbjct: 218 GNEIESGKIIFSEHLPLSKLQQGIKSGTYLQGTFRASRENYLEATVWIHGDNEENKEIIL 277

Query: 509 -GLLHVSQISHD 541
            GL H+++  H+
Sbjct: 278 QGLKHLNRAVHE 289
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>IF2A_PYRFU (Q8U1R5) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 275

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +2

Query: 437 GSVVLGTVESLKPYGAFIDIG---GINGLLHVSQIS 535
           G +V+ TV+ +  YGAF+D+    G  G +H+S+++
Sbjct: 12  GELVVATVKRVHNYGAFLDLDEYPGKEGFMHISEVA 47
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>IF2A_SULSO (Q97Z79) Translation initiation factor 2 alpha subunit|
           (eIF-2-alpha) (aIF2-alpha)
          Length = 266

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
 Frame = +2

Query: 269 GLKAFVPFSQVSSK--TTAEELL--DKELPLKFVEVDEEQGRLVLSNRKAMADSQ 421
           GL+AF+P+S+VSSK      ++L  ++++ +K + VD  +G + +S +K   D +
Sbjct: 36  GLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKKVTDDER 90
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>VG05_BPT4 (P16009) Tail-associated lysozyme (EC 3.2.1.17) (Protein Gp5)|
          Length = 575

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 416 SQAQLGIGSVVLGTVESLKPYGAFIDIGGINGLL 517
           S A  GIG  V G VE  + YG F+D    NG++
Sbjct: 63  SAAMSGIGGSVTGPVEGTRVYGHFLDKWKTNGIV 96
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>TEX_BORPE (Q45388) Protein tex|
          Length = 791

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +2

Query: 437 GSVVLGTVESLKPYGAFIDIG-GINGLLHVSQIS 535
           G V+ G V ++  +GAF+DIG   +GL+H+S ++
Sbjct: 670 GMVLEGVVTNVANFGAFVDIGVHQDGLVHISALA 703
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>SYT_WIGBR (Q8D3C0) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 636

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
 Frame = -1

Query: 192 CLH---LSQARSC*IDCKLRIKV-SSFGFSSIIMNCSTKP-GRMPASSIWSISRRHASSI 28
           C+H   LS+  SC    K+  +V S FGF  I++  ST+P  R+ +  IW  + +     
Sbjct: 387 CMHDQILSEVSSC---IKMIYEVYSCFGFKKILVKLSTRPENRIGSDEIWDFAEKQLELS 443

Query: 27  GKK 19
            KK
Sbjct: 444 LKK 446
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>MAGC1_HUMAN (O60732) Melanoma-associated antigen C1 (MAGE-C1 antigen)|
           (Cancer-testis antigen CT7)
          Length = 1142

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
 Frame = -2

Query: 470 LGFQQFPKQLNQYQAGLGCRPLPCDY*GQAYL------APHRPPQTSEVALCQATLQQLF 309
           L F QFP Q   +Q+ L      C       L      +P  PP+    +  Q  +   F
Sbjct: 724 LHFPQFPPQGEDFQSSLQSPVSICSSSTSLSLPQSFPESPQSPPEGPAQSPLQRPVSSFF 783

Query: 308 SMTLVKMEQMP*GPPREPP 252
           S TL  + Q     P+ PP
Sbjct: 784 SYTLASLLQSSHESPQSPP 802


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,987,023
Number of Sequences: 219361
Number of extensions: 1711966
Number of successful extensions: 4639
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 4446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4606
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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