ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags17b06 |
|---|---|
| Clone Library Name | barley_pub |
>SEL9_CAEEL (O17528) Suppressor/enhancer of lin-12 protein 9 precursor| Length = 203 Score = 45.4 bits (106), Expect = 9e-05 Identities = 25/78 (32%), Positives = 44/78 (56%) Frame = +2 Query: 56 DQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFESA 235 +Q A D + L E + +L AL +++ EQ ++E + +NEN + R + A FE+ Sbjct: 123 NQDAADN--AKLEEMVRELSSALMSVKHEQEYMEVRERVHRNINENTNSRVVMWAAFEAF 180 Query: 236 ALITASVIQVYLLRRLFE 289 L+ +V Q++ L+R FE Sbjct: 181 VLVGMTVGQIFYLKRFFE 198
>TMED2_CRIGR (P49020) Transmembrane emp24 domain trafficking protein 2 precursor| (COPI-coated vesicle membrane protein p24) (Fragment) Length = 196 Score = 45.1 bits (105), Expect = 1e-04 Identities = 23/89 (25%), Positives = 45/89 (50%) Frame = +2 Query: 23 FDVHVGHYSYFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSR 202 F + +G + H + L E I +L A+ ++ EQ ++E + +N+N + Sbjct: 103 FTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNS 162 Query: 203 RAIHKALFESAALITASVIQVYLLRRLFE 289 R + + FE+ L+ ++ Q+Y L+R FE Sbjct: 163 RVVLWSFFEALVLVAMTLGQIYYLKRFFE 191
>TMED2_RAT (Q63524) Transmembrane emp24 domain trafficking protein 2 precursor| (Membrane protein p24A) (RNP21.4) Length = 201 Score = 45.1 bits (105), Expect = 1e-04 Identities = 23/89 (25%), Positives = 45/89 (50%) Frame = +2 Query: 23 FDVHVGHYSYFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSR 202 F + +G + H + L E I +L A+ ++ EQ ++E + +N+N + Sbjct: 108 FTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNS 167 Query: 203 RAIHKALFESAALITASVIQVYLLRRLFE 289 R + + FE+ L+ ++ Q+Y L+R FE Sbjct: 168 RVVLWSFFEALVLVAMTLGQIYYLKRFFE 196
>TMED2_MOUSE (Q9R0Q3) Transmembrane emp24 domain trafficking protein 2 precursor| (Membrane protein p24A) (Sid 394) Length = 201 Score = 45.1 bits (105), Expect = 1e-04 Identities = 23/89 (25%), Positives = 45/89 (50%) Frame = +2 Query: 23 FDVHVGHYSYFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSR 202 F + +G + H + L E I +L A+ ++ EQ ++E + +N+N + Sbjct: 108 FTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNS 167 Query: 203 RAIHKALFESAALITASVIQVYLLRRLFE 289 R + + FE+ L+ ++ Q+Y L+R FE Sbjct: 168 RVVLWSFFEALVLVAMTLGQIYYLKRFFE 196
>TMED2_HUMAN (Q15363) Transmembrane emp24 domain trafficking protein 2 precursor| (Membrane protein p24A) Length = 201 Score = 45.1 bits (105), Expect = 1e-04 Identities = 23/89 (25%), Positives = 45/89 (50%) Frame = +2 Query: 23 FDVHVGHYSYFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSR 202 F + +G + H + L E I +L A+ ++ EQ ++E + +N+N + Sbjct: 108 FTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNS 167 Query: 203 RAIHKALFESAALITASVIQVYLLRRLFE 289 R + + FE+ L+ ++ Q+Y L+R FE Sbjct: 168 RVVLWSFFEALVLVAMTLGQIYYLKRFFE 196
>TMEDA_PONPY (Q5RE32) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) Length = 219 Score = 40.0 bits (92), Expect = 0.004 Identities = 21/81 (25%), Positives = 44/81 (54%) Frame = +2 Query: 53 FDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFES 232 +++ AK E PL ++ +L++ +I + ++E + + NE+ + R ++ ++F Sbjct: 135 YEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMEKREEEMRDTNESTNTRVLYFSIFSM 194 Query: 233 AALITASVIQVYLLRRLFERK 295 LI + QV+ LRR F+ K Sbjct: 195 FCLIGLATWQVFYLRRFFKAK 215
>TMEDA_MESAU (O35587) Transmembrane protein Tmp21 precursor (21 kDa| transmembrane trafficking protein) (Integral membrane protein p23) Length = 219 Score = 38.9 bits (89), Expect = 0.008 Identities = 20/81 (24%), Positives = 44/81 (54%) Frame = +2 Query: 53 FDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFES 232 +++ AK E PL ++ +L++ +I + +++ + + NE+ + R ++ ++F Sbjct: 135 YEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSM 194 Query: 233 AALITASVIQVYLLRRLFERK 295 LI + QV+ LRR F+ K Sbjct: 195 LCLIGLATWQVFYLRRFFKAK 215
>TMEDA_FUGRU (Q90515) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (S31III125) Length = 213 Score = 38.5 bits (88), Expect = 0.011 Identities = 20/81 (24%), Positives = 44/81 (54%) Frame = +2 Query: 53 FDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFES 232 +++ AK E PL ++ +L++ +I + +++ + + NE+ + R ++ ++F Sbjct: 129 YEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSM 188 Query: 233 AALITASVIQVYLLRRLFERK 295 LI + QV+ LRR F+ K Sbjct: 189 FCLIGLATWQVFYLRRFFKAK 209
>TMEDA_RAT (Q63584) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) Length = 219 Score = 38.5 bits (88), Expect = 0.011 Identities = 20/81 (24%), Positives = 44/81 (54%) Frame = +2 Query: 53 FDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFES 232 +++ AK E PL ++ +L++ +I + +++ + + NE+ + R ++ ++F Sbjct: 135 YEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSM 194 Query: 233 AALITASVIQVYLLRRLFERK 295 LI + QV+ LRR F+ K Sbjct: 195 FCLIGLATWQVFYLRRFFKAK 215
>TMEDA_RABIT (Q28735) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) (Integral membrane protein p23) Length = 219 Score = 38.5 bits (88), Expect = 0.011 Identities = 20/81 (24%), Positives = 44/81 (54%) Frame = +2 Query: 53 FDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFES 232 +++ AK E PL ++ +L++ +I + +++ + + NE+ + R ++ ++F Sbjct: 135 YEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSM 194 Query: 233 AALITASVIQVYLLRRLFERK 295 LI + QV+ LRR F+ K Sbjct: 195 FCLIGLATWQVFYLRRFFKAK 215
>TMEDA_MOUSE (Q9D1D4) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) Length = 219 Score = 38.5 bits (88), Expect = 0.011 Identities = 20/81 (24%), Positives = 44/81 (54%) Frame = +2 Query: 53 FDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFES 232 +++ AK E PL ++ +L++ +I + +++ + + NE+ + R ++ ++F Sbjct: 135 YEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSM 194 Query: 233 AALITASVIQVYLLRRLFERK 295 LI + QV+ LRR F+ K Sbjct: 195 FCLIGLATWQVFYLRRFFKAK 215
>TMEDA_HUMAN (P49755) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) (p24delta) (S31III125) (S31I125) (Tmp-21-I) Length = 219 Score = 38.5 bits (88), Expect = 0.011 Identities = 20/81 (24%), Positives = 44/81 (54%) Frame = +2 Query: 53 FDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFES 232 +++ AK E PL ++ +L++ +I + +++ + + NE+ + R ++ ++F Sbjct: 135 YEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSM 194 Query: 233 AALITASVIQVYLLRRLFERK 295 LI + QV+ LRR F+ K Sbjct: 195 FCLIGLATWQVFYLRRFFKAK 215
>TMEDA_BOVIN (Q5E971) Transmembrane emp24 domain-containing protein 10 precursor| (Transmembrane protein Tmp21) (21 kDa transmembrane trafficking protein) Length = 219 Score = 38.5 bits (88), Expect = 0.011 Identities = 20/81 (24%), Positives = 44/81 (54%) Frame = +2 Query: 53 FDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFES 232 +++ AK E PL ++ +L++ +I + +++ + + NE+ + R ++ ++F Sbjct: 135 YEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSM 194 Query: 233 AALITASVIQVYLLRRLFERK 295 LI + QV+ LRR F+ K Sbjct: 195 FCLIGLATWQVFYLRRFFKAK 215
>UVRA_HELPY (P56474) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 935 Score = 37.0 bits (84), Expect = 0.031 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Frame = +2 Query: 101 IAKLDEALYNIQFEQHWLEAQTDRQAILNENMSR--RAIHKALFESAALITASVIQ 262 + +LDE ++ + ++H +EA DR + NEN SR AI KAL ES + ++Q Sbjct: 183 MVRLDEEIHLHKTKKHTIEAVVDRVVVNNENASRIASAIEKALKESYGELEVEILQ 238
>UVRA_HELPJ (Q9ZLD6) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 941 Score = 35.0 bits (79), Expect = 0.12 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Frame = +2 Query: 101 IAKLDEALYNIQFEQHWLEAQTDRQAILNENMSR--RAIHKALFESAALITASVIQ 262 + +LDE ++ + ++H +EA DR I +EN SR A+ KAL ES + ++Q Sbjct: 189 MVRLDEEIHLHKTKKHTIEAVVDRVVINSENASRIASAVEKALKESYGELEVEILQ 244
>EMP24_YEAST (P32803) Endosomal P24B protein precursor (24 kDa endomembrane| protein) (Basic 24 kDa late endocytic intermediate component) Length = 203 Score = 32.3 bits (72), Expect = 0.77 Identities = 22/89 (24%), Positives = 41/89 (46%) Frame = +2 Query: 23 FDVHVGHYSYFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSR 202 F++H Y D D + + L + KL + ++ EQ ++ + E+ + Sbjct: 114 FNIHGVVYVDLD----DPNTNTLDSAVRKLSKLTREVKDEQSYIVIRERTHRNTAESTND 169 Query: 203 RAIHKALFESAALITASVIQVYLLRRLFE 289 R ++F+ +I S+ Q+Y LRR FE Sbjct: 170 RVKWWSIFQLGVVIANSLFQIYYLRRFFE 198
>POXB_ECOLI (P07003) Pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) (Pyruvate| oxidase) (POX) (Pyruvate dehydrogenase [Ubiquinone]) [Contains: Alpha-peptide] Length = 572 Score = 30.8 bits (68), Expect = 2.2 Identities = 20/50 (40%), Positives = 26/50 (52%) Frame = +1 Query: 148 LARGPNRPASNIEREHEQEGHPQGTFRVGCAHYSQRHSSLSATPTLRAQA 297 LA + P+S I + QE HPQ FR C+HY + SS P + A A Sbjct: 96 LAIAAHIPSSEIGSGYFQETHPQELFR-ECSHYCELVSSPEQIPQVLAIA 144
>YE98_SCHPO (O13770) Hypothetical protein C17A5.08 precursor| Length = 210 Score = 30.0 bits (66), Expect = 3.8 Identities = 17/76 (22%), Positives = 36/76 (47%) Frame = +2 Query: 65 AKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFESAALI 244 AKD + + ++ AL I Q++ + + R ++ R +L ES ++ Sbjct: 129 AKDYKKDSMQSTVLEISTALSEIDRVQNYFKTREHRNYSTVKSTQARIFWFSLAESIMVV 188 Query: 245 TASVIQVYLLRRLFER 292 S +QV++++ F+R Sbjct: 189 ALSALQVFIVKTFFKR 204
>SYNE2_HUMAN (Q8WXH0) Nesprin-2 (Nuclear envelope spectrin repeat protein 2)| (Syne-2) (Synaptic nuclear envelope protein 2) (Nucleus and actin connecting element protein) (NUANCE protein) Length = 6885 Score = 30.0 bits (66), Expect = 3.8 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%) Frame = +2 Query: 5 RHET*XFDVHVG------HYSYFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQHWLEAQT 166 R+E F H+G H + + K +H L E I + + IQ +WLEAQ Sbjct: 5134 RYERTEFAEHLGEMNRQWHRVHGMLNRKIQHLEQLLESITESEN---KIQILNNWLEAQE 5190 Query: 167 DRQAILNENMSRRAIHKALFE 229 +R L + S ++ K L + Sbjct: 5191 ERLKTLQKPESVISVQKLLLD 5211
>GAB1_HUMAN (Q13480) GRB2-associated-binding protein 1 (GRB2-associated binder| 1) Length = 694 Score = 29.3 bits (64), Expect = 6.5 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 7/64 (10%) Frame = +3 Query: 207 PSTRHFSSRLRSLQPASFKSICYADSSSASWG-------HLGSDATSKTPPHRPLEAVTL 365 P +H SS +Q A++ + +S+G H+G ++ KTPP RP+ Sbjct: 455 PPRQHSSSFTEPIQEANYVPMTPGTFDFSSFGMQVPPPAHMGFRSSPKTPPRRPVPVA-- 512 Query: 366 NCAP 377 +C P Sbjct: 513 DCEP 516
>BCPA_CHLTE (Q46393) Bacteriochlorophyll a protein (BChl a protein) (BCP)| (Fenna-Matthews-Olson protein) (FMO-protein) Length = 365 Score = 29.3 bits (64), Expect = 6.5 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Frame = +3 Query: 279 DSSSASWGHLGSDATSKTPPHRPLEA----VTLNCAPLLVCGFFVLHM*SFDSIYDGFEN 446 + S+SWG + + A PP PL V LN PL FV F+SI D +N Sbjct: 20 EGGSSSWGKVKARAKVNAPPASPLLPADCDVKLNVKPLDPAKGFVRISAVFESIVDSTKN 79
>BCPA_CHLLT (Q46135) Bacteriochlorophyll a protein (BChl a protein) (BCP)| (Fenna-Matthews-Olson protein) (FMO-protein) (Fragment) Length = 354 Score = 29.3 bits (64), Expect = 6.5 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Frame = +3 Query: 279 DSSSASWGHLGSDATSKTPPHRPLEA----VTLNCAPLLVCGFFVLHM*SFDSIYDGFEN 446 + S+SWG + + A PP PL V LN PL FV F+SI D +N Sbjct: 9 EGGSSSWGKVKARAKVNVPPASPLLPADCNVKLNVKPLDPAKGFVRISAVFESIVDSTKN 68
>TMED5_PONPY (Q5R809) Transmembrane emp24 domain-containing protein 5 precursor| Length = 229 Score = 28.9 bits (63), Expect = 8.5 Identities = 20/75 (26%), Positives = 30/75 (40%) Frame = +2 Query: 71 DEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFESAALITA 250 D + E I + L Q L A R + E+ R ++ ++ Sbjct: 150 DMKLEDILESINSIKSRLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSMVNLVVMVVV 209 Query: 251 SVIQVYLLRRLFERK 295 S IQVY+L+ LFE K Sbjct: 210 SAIQVYMLKSLFEDK 224
>TMED5_HUMAN (Q9Y3A6) Transmembrane emp24 domain-containing protein 5 precursor| Length = 229 Score = 28.9 bits (63), Expect = 8.5 Identities = 20/75 (26%), Positives = 30/75 (40%) Frame = +2 Query: 71 DEHFSPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAIHKALFESAALITA 250 D + E I + L Q L A R + E+ R ++ ++ Sbjct: 150 DMKLEDILESINSIKSRLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSMVNLVVMVVV 209 Query: 251 SVIQVYLLRRLFERK 295 S IQVY+L+ LFE K Sbjct: 210 SAIQVYMLKSLFEDK 224 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,402,404 Number of Sequences: 219361 Number of extensions: 1420732 Number of successful extensions: 3897 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3789 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3896 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
