| Clone Name | bags17a23 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 99.6 bits (50), Expect = 2e-18 Identities = 77/86 (89%) Strand = Plus / Plus Query: 4 ggcattgaagccaggttttcttcactcattgaatctacagctgctaacctcagaggtcct 63 ||||||||||| ||||||| ||||||||||||||| |||||| |||| ||||||| |||| Sbjct: 10848556 ggcattgaagcaaggttttattcactcattgaatcaacagcttctaagctcagagatcct 10848615 Query: 64 catctttcttacctagttgaaggccc 89 ||| ||||||||||| | |||||||| Sbjct: 10848616 catgtttcttacctaatcgaaggccc 10848641
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 99.6 bits (50), Expect = 2e-18 Identities = 77/86 (89%) Strand = Plus / Plus Query: 4 ggcattgaagccaggttttcttcactcattgaatctacagctgctaacctcagaggtcct 63 ||||||||||| ||||||| ||||||||||||||| |||||| |||| ||||||| |||| Sbjct: 10848255 ggcattgaagcaaggttttattcactcattgaatcaacagcttctaagctcagagatcct 10848314 Query: 64 catctttcttacctagttgaaggccc 89 ||| ||||||||||| | |||||||| Sbjct: 10848315 catgtttcttacctaatcgaaggccc 10848340
>emb|AL731876.3|CNS08C8G Oryza sativa chromosome 12, . BAC OJ1194_E11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 119388 Score = 99.6 bits (50), Expect = 2e-18 Identities = 77/86 (89%) Strand = Plus / Plus Query: 4 ggcattgaagccaggttttcttcactcattgaatctacagctgctaacctcagaggtcct 63 ||||||||||| ||||||| ||||||||||||||| |||||| |||| ||||||| |||| Sbjct: 114905 ggcattgaagcaaggttttattcactcattgaatcaacagcttctaagctcagagatcct 114964 Query: 64 catctttcttacctagttgaaggccc 89 ||| ||||||||||| | |||||||| Sbjct: 114965 catgtttcttacctaatcgaaggccc 114990
>gb|AC134402.9| Mus musculus chromosome 5, clone RP24-301D19, complete sequence Length = 199834 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 tggcattgaagccaggtttt 22 |||||||||||||||||||| Sbjct: 120829 tggcattgaagccaggtttt 120810
>gb|AY449280.1| Saimiri sciureus clone OLG_54 olfactory receptor-like protein gene, partial sequence Length = 658 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 aggttttcttcactcattga 35 |||||||||||||||||||| Sbjct: 265 aggttttcttcactcattga 284
>gb|AC122692.4| Homo sapiens X BAC RP13-675A2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 102257 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 tttcttcactcattgaatct 39 |||||||||||||||||||| Sbjct: 49247 tttcttcactcattgaatct 49266
>gb|AC126410.12| Mus musculus chromosome 5, clone RP23-368H6, complete sequence Length = 187058 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 tggcattgaagccaggtttt 22 |||||||||||||||||||| Sbjct: 137326 tggcattgaagccaggtttt 137345
>gb|AC106799.3| Homo sapiens chromosome 5 clone RP11-445O3, complete sequence Length = 176095 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gactgcaacatgtgatgaat 109 |||||||||||||||||||| Sbjct: 125474 gactgcaacatgtgatgaat 125493
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 atctttcttacctagttgaa 84 |||||||||||||||||||| Sbjct: 15494066 atctttcttacctagttgaa 15494085
>ref|XM_578339.1| PREDICTED: Rattus norvegicus similar to immunoglobulin kappa-chain (LOC502839), mRNA Length = 843 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 agccaggttttcttcactca 31 |||||||||||||||||||| Sbjct: 801 agccaggttttcttcactca 782
>dbj|AP003204.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1111C09 Length = 156393 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 atctttcttacctagttgaa 84 |||||||||||||||||||| Sbjct: 51575 atctttcttacctagttgaa 51594
>gb|AC005247.2| Homo sapiens PAC clone RP4-740L10 from 7, complete sequence Length = 124096 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 19 ttttcttcactcattgaat 37 ||||||||||||||||||| Sbjct: 69552 ttttcttcactcattgaat 69534
>gb|AC174830.3| Myotis lucifugus clone CH235-234J19, complete sequence Length = 196835 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 56 gaggtcctcatctttctta 74 ||||||||||||||||||| Sbjct: 28772 gaggtcctcatctttctta 28754
>emb|AL136167.8| Human DNA sequence from clone RP1-299I16 on chromosome Xq26.1-27.3 Contains part of the GPR112 gene for G protein-coupled receptor 112, complete sequence Length = 63946 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 tcattgaatctacagctgc 47 ||||||||||||||||||| Sbjct: 21403 tcattgaatctacagctgc 21421
>gb|AY319968.1| Rhipicephalus haemaphysaloides haemaphysaloides ATPase subunit 6 mRNA, complete cds; mitochondrial gene for mitochondrial product Length = 866 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 aatcacaccattcagttat 125 ||||||||||||||||||| Sbjct: 249 aatcacaccattcagttat 267
>emb|BX927155.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete genome; segment 8/10 Length = 349136 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 55 agaggtcctcatctttctt 73 ||||||||||||||||||| Sbjct: 135064 agaggtcctcatctttctt 135082
>emb|CR936801.1| Homo sapiens mRNA; cDNA DKFZp781E1948 (from clone DKFZp781E1948) Length = 8971 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 tcattgaatctacagctgc 47 ||||||||||||||||||| Sbjct: 845 tcattgaatctacagctgc 863
>emb|CR749265.1| Homo sapiens mRNA; cDNA DKFZp781C1855 (from clone DKFZp781C1855) Length = 4050 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 ggcattgaagccaggtttt 22 ||||||||||||||||||| Sbjct: 3413 ggcattgaagccaggtttt 3395
>gb|AC024651.13| Homo sapiens chromosome 15, clone RP11-753A21, complete sequence Length = 212185 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 29 tcattgaatctacagctgctaac 51 ||||||||||| ||||||||||| Sbjct: 136729 tcattgaatctccagctgctaac 136707
>gb|AC092809.2| Homo sapiens chromosome 1 clone RP11-365O16, complete sequence Length = 197621 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 tctggcattgaagccaggt 19 ||||||||||||||||||| Sbjct: 187750 tctggcattgaagccaggt 187768
>gb|AY255581.1| Homo sapiens G protein-coupled receptor GPR112 mRNA, partial cds Length = 3813 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 tcattgaatctacagctgc 47 ||||||||||||||||||| Sbjct: 284 tcattgaatctacagctgc 302
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 100 tgtgatgaatcacaccatt 118 ||||||||||||||||||| Sbjct: 17539170 tgtgatgaatcacaccatt 17539152
>gb|AC145899.4| Pan troglodytes BAC clone RP43-19O5 from chromosome 7, complete sequence Length = 176118 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 18 gttttcttcactcattgaa 36 ||||||||||||||||||| Sbjct: 132962 gttttcttcactcattgaa 132944
>gb|AC146446.3| Pan troglodytes BAC clone RP43-5P22 from chromosome 7, complete sequence Length = 164152 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 18 gttttcttcactcattgaa 36 ||||||||||||||||||| Sbjct: 153024 gttttcttcactcattgaa 153042
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome Length = 3309401 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 55 agaggtcctcatctttctt 73 ||||||||||||||||||| Sbjct: 2607890 agaggtcctcatctttctt 2607908
>gb|AC099790.3| Homo sapiens chromosome 1 clone RP11-397G23, complete sequence Length = 213942 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 tctggcattgaagccaggt 19 ||||||||||||||||||| Sbjct: 16743 tctggcattgaagccaggt 16761
>dbj|AP004999.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0040H05 Length = 172623 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 100 tgtgatgaatcacaccatt 118 ||||||||||||||||||| Sbjct: 151167 tgtgatgaatcacaccatt 151149
>dbj|AP004086.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1288_D09 Length = 124026 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 100 tgtgatgaatcacaccatt 118 ||||||||||||||||||| Sbjct: 9088 tgtgatgaatcacaccatt 9070
>ref|NM_153834.3| Homo sapiens G protein-coupled receptor 112 (GPR112), mRNA Length = 9931 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 tcattgaatctacagctgc 47 ||||||||||||||||||| Sbjct: 1601 tcattgaatctacagctgc 1619
>emb|CT025701.10| Mouse DNA sequence from clone RP24-68C7 on chromosome 9, complete sequence Length = 120779 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 ctggcattgaagccaggtt 20 ||||||||||||||||||| Sbjct: 48605 ctggcattgaagccaggtt 48587
>gb|AY140954.1| Homo sapiens G-protein coupled receptor GPR112 (GPR112) mRNA, complete cds Length = 8400 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 tcattgaatctacagctgc 47 ||||||||||||||||||| Sbjct: 1118 tcattgaatctacagctgc 1136
>gb|AY882585.1| Homo sapiens G protein-coupled receptor 112 (GPR112) mRNA, complete cds Length = 9931 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 tcattgaatctacagctgc 47 ||||||||||||||||||| Sbjct: 1601 tcattgaatctacagctgc 1619 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,230,941 Number of Sequences: 3902068 Number of extensions: 1230941 Number of successful extensions: 79307 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79189 Number of HSP's gapped (non-prelim): 118 length of query: 139 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 118 effective length of database: 17,151,101,840 effective search space: 2023830017120 effective search space used: 2023830017120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)