ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags17a23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 100 2e-18
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 100 2e-18
3emb|AL731876.3|CNS08C8G Oryza sativa chromosome 12, . BAC OJ1194... 100 2e-18
4gb|AC134402.9| Mus musculus chromosome 5, clone RP24-301D19, com... 40 1.7
5gb|AY449280.1| Saimiri sciureus clone OLG_54 olfactory receptor-... 40 1.7
6gb|AC122692.4| Homo sapiens X BAC RP13-675A2 (Roswell Park Cance... 40 1.7
7gb|AC126410.12| Mus musculus chromosome 5, clone RP23-368H6, com... 40 1.7
8gb|AC106799.3| Homo sapiens chromosome 5 clone RP11-445O3, compl... 40 1.7
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.7
10ref|XM_578339.1| PREDICTED: Rattus norvegicus similar to immunog... 40 1.7
11dbj|AP003204.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.7
12gb|AC005247.2| Homo sapiens PAC clone RP4-740L10 from 7, complet... 38 6.6
13gb|AC174830.3| Myotis lucifugus clone CH235-234J19, complete seq... 38 6.6
14emb|AL136167.8| Human DNA sequence from clone RP1-299I16 on chro... 38 6.6
15gb|AY319968.1| Rhipicephalus haemaphysaloides haemaphysaloides A... 38 6.6
16emb|BX927155.1| Corynebacterium glutamicum ATCC 13032, IS finger... 38 6.6
17emb|CR936801.1| Homo sapiens mRNA; cDNA DKFZp781E1948 (from clon... 38 6.6
18emb|CR749265.1| Homo sapiens mRNA; cDNA DKFZp781C1855 (from clon... 38 6.6
19gb|AC024651.13| Homo sapiens chromosome 15, clone RP11-753A21, c... 38 6.6
20gb|AC092809.2| Homo sapiens chromosome 1 clone RP11-365O16, comp... 38 6.6
21gb|AY255581.1| Homo sapiens G protein-coupled receptor GPR112 mR... 38 6.6
22dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.6
23gb|AC145899.4| Pan troglodytes BAC clone RP43-19O5 from chromoso... 38 6.6
24gb|AC146446.3| Pan troglodytes BAC clone RP43-5P22 from chromoso... 38 6.6
25dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 38 6.6
26gb|AC099790.3| Homo sapiens chromosome 1 clone RP11-397G23, comp... 38 6.6
27dbj|AP004999.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.6
28dbj|AP004086.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.6
29ref|NM_153834.3| Homo sapiens G protein-coupled receptor 112 (GP... 38 6.6
30emb|CT025701.10| Mouse DNA sequence from clone RP24-68C7 on chro... 38 6.6
31gb|AY140954.1| Homo sapiens G-protein coupled receptor GPR112 (G... 38 6.6
32gb|AY882585.1| Homo sapiens G protein-coupled receptor 112 (GPR1... 38 6.6

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 99.6 bits (50), Expect = 2e-18
 Identities = 77/86 (89%)
 Strand = Plus / Plus

                                                                            
Query: 4        ggcattgaagccaggttttcttcactcattgaatctacagctgctaacctcagaggtcct 63
                ||||||||||| ||||||| ||||||||||||||| |||||| |||| ||||||| ||||
Sbjct: 10848556 ggcattgaagcaaggttttattcactcattgaatcaacagcttctaagctcagagatcct 10848615

                                          
Query: 64       catctttcttacctagttgaaggccc 89
                ||| ||||||||||| | ||||||||
Sbjct: 10848616 catgtttcttacctaatcgaaggccc 10848641



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 99.6 bits (50), Expect = 2e-18
 Identities = 77/86 (89%)
 Strand = Plus / Plus

                                                                            
Query: 4        ggcattgaagccaggttttcttcactcattgaatctacagctgctaacctcagaggtcct 63
                ||||||||||| ||||||| ||||||||||||||| |||||| |||| ||||||| ||||
Sbjct: 10848255 ggcattgaagcaaggttttattcactcattgaatcaacagcttctaagctcagagatcct 10848314

                                          
Query: 64       catctttcttacctagttgaaggccc 89
                ||| ||||||||||| | ||||||||
Sbjct: 10848315 catgtttcttacctaatcgaaggccc 10848340



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>emb|AL731876.3|CNS08C8G Oryza sativa chromosome 12, . BAC OJ1194_E11 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 119388

 Score = 99.6 bits (50), Expect = 2e-18
 Identities = 77/86 (89%)
 Strand = Plus / Plus

                                                                          
Query: 4      ggcattgaagccaggttttcttcactcattgaatctacagctgctaacctcagaggtcct 63
              ||||||||||| ||||||| ||||||||||||||| |||||| |||| ||||||| ||||
Sbjct: 114905 ggcattgaagcaaggttttattcactcattgaatcaacagcttctaagctcagagatcct 114964

                                        
Query: 64     catctttcttacctagttgaaggccc 89
              ||| ||||||||||| | ||||||||
Sbjct: 114965 catgtttcttacctaatcgaaggccc 114990



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>gb|AC134402.9| Mus musculus chromosome 5, clone RP24-301D19, complete sequence
          Length = 199834

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      tggcattgaagccaggtttt 22
              ||||||||||||||||||||
Sbjct: 120829 tggcattgaagccaggtttt 120810



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>gb|AY449280.1| Saimiri sciureus clone OLG_54 olfactory receptor-like protein gene,
           partial sequence
          Length = 658

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  aggttttcttcactcattga 35
           ||||||||||||||||||||
Sbjct: 265 aggttttcttcactcattga 284



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>gb|AC122692.4| Homo sapiens X BAC RP13-675A2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 102257

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    tttcttcactcattgaatct 39
             ||||||||||||||||||||
Sbjct: 49247 tttcttcactcattgaatct 49266



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>gb|AC126410.12| Mus musculus chromosome 5, clone RP23-368H6, complete sequence
          Length = 187058

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      tggcattgaagccaggtttt 22
              ||||||||||||||||||||
Sbjct: 137326 tggcattgaagccaggtttt 137345



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>gb|AC106799.3| Homo sapiens chromosome 5 clone RP11-445O3, complete sequence
          Length = 176095

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     gactgcaacatgtgatgaat 109
              ||||||||||||||||||||
Sbjct: 125474 gactgcaacatgtgatgaat 125493



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 65       atctttcttacctagttgaa 84
                ||||||||||||||||||||
Sbjct: 15494066 atctttcttacctagttgaa 15494085



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>ref|XM_578339.1| PREDICTED: Rattus norvegicus similar to immunoglobulin kappa-chain
           (LOC502839), mRNA
          Length = 843

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  agccaggttttcttcactca 31
           ||||||||||||||||||||
Sbjct: 801 agccaggttttcttcactca 782



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>dbj|AP003204.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1111C09
          Length = 156393

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    atctttcttacctagttgaa 84
             ||||||||||||||||||||
Sbjct: 51575 atctttcttacctagttgaa 51594



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>gb|AC005247.2| Homo sapiens PAC clone RP4-740L10 from 7, complete sequence
          Length = 124096

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 19    ttttcttcactcattgaat 37
             |||||||||||||||||||
Sbjct: 69552 ttttcttcactcattgaat 69534



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>gb|AC174830.3| Myotis lucifugus clone CH235-234J19, complete sequence
          Length = 196835

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 56    gaggtcctcatctttctta 74
             |||||||||||||||||||
Sbjct: 28772 gaggtcctcatctttctta 28754



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>emb|AL136167.8| Human DNA sequence from clone RP1-299I16 on chromosome Xq26.1-27.3
             Contains part of the GPR112 gene for G protein-coupled
             receptor 112, complete sequence
          Length = 63946

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 29    tcattgaatctacagctgc 47
             |||||||||||||||||||
Sbjct: 21403 tcattgaatctacagctgc 21421



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>gb|AY319968.1| Rhipicephalus haemaphysaloides haemaphysaloides ATPase subunit 6
           mRNA, complete cds; mitochondrial gene for mitochondrial
           product
          Length = 866

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 107 aatcacaccattcagttat 125
           |||||||||||||||||||
Sbjct: 249 aatcacaccattcagttat 267



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>emb|BX927155.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 8/10
          Length = 349136

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 55     agaggtcctcatctttctt 73
              |||||||||||||||||||
Sbjct: 135064 agaggtcctcatctttctt 135082



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>emb|CR936801.1| Homo sapiens mRNA; cDNA DKFZp781E1948 (from clone DKFZp781E1948)
          Length = 8971

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 29  tcattgaatctacagctgc 47
           |||||||||||||||||||
Sbjct: 845 tcattgaatctacagctgc 863



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>emb|CR749265.1| Homo sapiens mRNA; cDNA DKFZp781C1855 (from clone DKFZp781C1855)
          Length = 4050

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 4    ggcattgaagccaggtttt 22
            |||||||||||||||||||
Sbjct: 3413 ggcattgaagccaggtttt 3395



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>gb|AC024651.13| Homo sapiens chromosome 15, clone RP11-753A21, complete sequence
          Length = 212185

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 29     tcattgaatctacagctgctaac 51
              ||||||||||| |||||||||||
Sbjct: 136729 tcattgaatctccagctgctaac 136707



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>gb|AC092809.2| Homo sapiens chromosome 1 clone RP11-365O16, complete sequence
          Length = 197621

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 1      tctggcattgaagccaggt 19
              |||||||||||||||||||
Sbjct: 187750 tctggcattgaagccaggt 187768



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>gb|AY255581.1| Homo sapiens G protein-coupled receptor GPR112 mRNA, partial cds
          Length = 3813

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 29  tcattgaatctacagctgc 47
           |||||||||||||||||||
Sbjct: 284 tcattgaatctacagctgc 302



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 100      tgtgatgaatcacaccatt 118
                |||||||||||||||||||
Sbjct: 17539170 tgtgatgaatcacaccatt 17539152



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>gb|AC145899.4| Pan troglodytes BAC clone RP43-19O5 from chromosome 7, complete sequence
          Length = 176118

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 18     gttttcttcactcattgaa 36
              |||||||||||||||||||
Sbjct: 132962 gttttcttcactcattgaa 132944



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>gb|AC146446.3| Pan troglodytes BAC clone RP43-5P22 from chromosome 7, complete sequence
          Length = 164152

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 18     gttttcttcactcattgaa 36
              |||||||||||||||||||
Sbjct: 153024 gttttcttcactcattgaa 153042



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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 55      agaggtcctcatctttctt 73
               |||||||||||||||||||
Sbjct: 2607890 agaggtcctcatctttctt 2607908



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>gb|AC099790.3| Homo sapiens chromosome 1 clone RP11-397G23, complete sequence
          Length = 213942

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     tctggcattgaagccaggt 19
             |||||||||||||||||||
Sbjct: 16743 tctggcattgaagccaggt 16761



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>dbj|AP004999.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0040H05
          Length = 172623

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 100    tgtgatgaatcacaccatt 118
              |||||||||||||||||||
Sbjct: 151167 tgtgatgaatcacaccatt 151149



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>dbj|AP004086.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1288_D09
          Length = 124026

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 100  tgtgatgaatcacaccatt 118
            |||||||||||||||||||
Sbjct: 9088 tgtgatgaatcacaccatt 9070



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>ref|NM_153834.3| Homo sapiens G protein-coupled receptor 112 (GPR112), mRNA
          Length = 9931

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 29   tcattgaatctacagctgc 47
            |||||||||||||||||||
Sbjct: 1601 tcattgaatctacagctgc 1619



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>emb|CT025701.10| Mouse DNA sequence from clone RP24-68C7 on chromosome 9, complete
             sequence
          Length = 120779

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 2     ctggcattgaagccaggtt 20
             |||||||||||||||||||
Sbjct: 48605 ctggcattgaagccaggtt 48587



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>gb|AY140954.1| Homo sapiens G-protein coupled receptor GPR112 (GPR112) mRNA,
            complete cds
          Length = 8400

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 29   tcattgaatctacagctgc 47
            |||||||||||||||||||
Sbjct: 1118 tcattgaatctacagctgc 1136



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>gb|AY882585.1| Homo sapiens G protein-coupled receptor 112 (GPR112) mRNA, complete
            cds
          Length = 9931

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 29   tcattgaatctacagctgc 47
            |||||||||||||||||||
Sbjct: 1601 tcattgaatctacagctgc 1619


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,230,941
Number of Sequences: 3902068
Number of extensions: 1230941
Number of successful extensions: 79307
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79189
Number of HSP's gapped (non-prelim): 118
length of query: 139
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 118
effective length of database: 17,151,101,840
effective search space: 2023830017120
effective search space used: 2023830017120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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